Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009992g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 4.8e-26 122.1 62 100.0
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.0e-24 116.7 62 93.5
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 1.5e-19 100.5 62 80.6
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 4.3e-19 99.0 61 82.0
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 6.9e-17 91.7 49 87.8
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 4.9e-15 85.5 47 85.1
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 2.4e-14 83.2 62 62.9
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 3.2e-14 82.8 60 70.0
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 7.9e-13 78.2 59 69.5
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 2.3e-12 76.6 59 67.8
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 8.7e-12 74.7 61 57.4
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 1.9e-11 73.6 55 61.8
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 1.9e-11 73.6 59 61.0
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 2.5e-11 73.2 62 59.7
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 9.6e-11 71.2 61 60.7
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 1.3e-10 70.9 56 67.9
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 1.6e-10 70.5 61 62.3
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 2.1e-10 70.1 61 57.4
Thecc.09G086100 Theobroma cacao HOM05D003238 ORTHO05D003571 2.1e-10 70.1 59 62.7
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 4.8e-10 68.9 61 52.5
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 4.8e-10 68.9 61 52.5
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 4.8e-10 68.9 59 66.1
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 4.8e-10 68.9 59 62.7
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 4.8e-10 68.9 61 62.3
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 4.8e-10 68.9 59 62.7
Duzib168G0217 Durio zibethinus HOM05D003238 ORTHO05D003571 6.2e-10 68.6 57 61.4
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 8.2e-10 68.2 56 58.9
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 8.2e-10 68.2 59 61.0
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.1e-09 67.8 59 61.0
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.1e-09 67.8 59 61.0
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.1e-09 67.8 61 60.7
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.4e-09 67.4 59 59.3
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 1.4e-09 67.4 52 65.4
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 1.8e-09 67.0 61 54.1
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 2.4e-09 66.6 61 60.7
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 3.1e-09 66.2 62 50.0
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 4.0e-09 65.9 57 59.6
CARHR065610 Cardamine hirsuta HOM05D003238 ORTHO05D003571 5.3e-09 65.5 56 60.7
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 6.9e-09 65.1 61 59.0
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 6.9e-09 65.1 62 53.2
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 9.0e-09 64.7 57 61.4
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 1.2e-08 64.3 52 63.5
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 1.2e-08 64.3 61 59.0
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 1.2e-08 64.3 49 61.2
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 1.5e-08 63.9 61 59.0
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 1.5e-08 63.9 50 62.0
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 2.0e-08 63.5 59 59.3
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.0e-08 63.5 59 59.3
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 2.0e-08 63.5 57 59.6
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.6e-08 63.2 62 56.5
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 2.6e-08 63.2 59 62.7
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 3.4e-08 62.8 59 59.3
Sp5g27750 Schrenkiella parvula HOM05D003238 ORTHO05D003571 3.4e-08 62.8 49 61.2
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 3.4e-08 62.8 53 62.3
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 3.4e-08 62.8 61 55.7
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 3.4e-08 62.8 48 66.7
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 4.5e-08 62.4 48 64.6
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 5.8e-08 62.0 61 54.1
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 5.8e-08 62.0 57 59.6
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 7.6e-08 61.6 61 49.2
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 7.6e-08 61.6 59 59.3
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 7.6e-08 61.6 60 56.7
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 1.0e-07 61.2 49 61.2
TPR.G13426 Trifolium pratense HOM05D003238 ORTHO05D003571 1.0e-07 61.2 46 63.0
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 1.3e-07 60.8 59 54.2
vmacro23045 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 1.3e-07 60.8 57 57.9
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 1.7e-07 60.5 53 58.5
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 1.7e-07 60.5 51 60.8
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 2.2e-07 60.1 61 57.4
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 2.2e-07 60.1 59 61.0
AL2G32370 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 2.9e-07 59.7 50 62.0
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 2.9e-07 59.7 50 62.0
C06p34720 Brassica napus HOM05D003238 ORTHO05D003571 2.9e-07 59.7 50 62.0
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 2.9e-07 59.7 50 62.0
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 2.9e-07 59.7 59 54.2
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 2.9e-07 59.7 58 51.7
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 2.9e-07 59.7 48 60.4
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 3.8e-07 59.3 49 51.0
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 3.8e-07 59.3 58 53.4
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 4.9e-07 58.9 47 63.8
AT1G72690 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 6.5e-07 58.5 50 62.0
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 6.5e-07 58.5 61 54.1
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 6.5e-07 58.5 59 55.9
Atru.chr7.1621 Acer truncatum HOM05D003238 ORTHO05D003571 8.4e-07 58.2 57 52.6
Gorai.001G012800 Gossypium raimondii HOM05D003238 ORTHO05D003571 8.4e-07 58.2 55 60.0
HPP92_007657 Vanilla planifolia HOM05D003238 ORTHO05D003571 8.4e-07 58.2 50 56.0
TWI79G0340 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.1e-06 57.8 59 54.2
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 1.4e-06 57.4 61 52.5
ATR0789G083 Amborella trichopoda HOM05D003238 ORTHO05D003571 1.9e-06 57.0 58 56.9
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 1.9e-06 57.0 54 55.6
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 1.9e-06 57.0 59 54.2
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 1.9e-06 57.0 59 44.1
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 1.9e-06 57.0 58 56.9
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 3.2e-06 56.2 46 60.9
Gohir.D07G012200 Gossypium hirsutum HOM05D001717 ORTHO05D007217 4.2e-06 55.8 52 59.6
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 4.2e-06 55.8 56 48.2
Solyc06g062765.1 Solanum lycopersicum HOM05D003238 ORTHO05D003571 4.2e-06 55.8 56 53.6
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 4.2e-06 55.8 56 53.6
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 5.5e-06 55.5 49 59.2
Aa31LG4G3050 Aethionema arabicum HOM05D003238 ORTHO05D003571 5.5e-06 55.5 51 51.0
Cc00_g10140 Coffea canephora HOM05D001135 ORTHO05D001005 9.3e-06 54.7 48 52.1
Manes.16G100500 Manihot esculenta HOM05D003238 ORTHO05D003571 9.3e-06 54.7 48 58.3
HPP92_005498 Vanilla planifolia HOM05D003238 ORTHO05D003571 9.3e-06 54.7 50 56.0


User provided reference genes

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