Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009982g0010 Nicotiana tabacum HOM05D006755 ORTHO05D008472 2.7e-289 998.4 702 100.0
Nitab4.5_0000943g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 1.8e-115 421.0 340 92.4
Nitab4.5_0002859g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 9.5e-109 398.7 340 89.4
Peaxi162Scf00876g00046 Petunia axillaris HOM05D006755 ORTHO05D008472 2.0e-103 380.9 343 85.4
CAN.G947.37 Capsicum annuum HOM05D006755 ORTHO05D008472 6.0e-103 379.4 344 83.7
Solyc12g096140.3 Solanum lycopersicum HOM05D006755 ORTHO05D008472 9.8e-98 362.1 344 84.0
PGSC0003DMG400029290 Solanum tuberosum HOM05D006755 ORTHO05D008472 9.8e-98 362.1 352 81.5
Sopen12g032020 Solanum pennellii HOM05D006755 ORTHO05D008472 1.4e-96 358.2 347 83.0
Peaxi162Scf00193g00005 Petunia axillaris HOM05D006755 ORTHO05D008472 1.3e-73 282.0 345 74.2
Nitab4.5_0001968g0030 Nicotiana tabacum HOM05D006755 ORTHO05D008472 5.1e-54 216.9 226 93.4
Cc08_g09000 Coffea canephora HOM05D006755 ORTHO05D008472 5.5e-48 196.8 345 55.7
Oeu033356.1 Olea europaea HOM05D006755 ORTHO05D008472 1.6e-47 195.3 320 69.4
Migut.E01827 Erythranthe guttata HOM05D006755 ORTHO05D008472 2.7e-47 194.5 310 66.8
MSTRG.1737 Avicennia marina HOM05D006755 ORTHO05D008472 3.7e-44 184.1 301 71.1
Rhsim12G0052500 Rhododendron simsii HOM05D006755 ORTHO05D008472 6.9e-43 179.9 281 71.9
SGA_v2.0_scaffold21G09644 Striga asiatica HOM05D006755 ORTHO05D008472 1.2e-42 179.1 285 70.2
Thecc.02G149300 Theobroma cacao HOM05D006755 ORTHO05D008472 2.9e-41 174.5 286 65.7
CSS0044736 Camellia sinensis var. sinensis HOM05D006755 ORTHO05D008472 2.5e-40 171.4 227 82.4
Gorai.013G065500 Gossypium raimondii HOM05D006755 ORTHO05D008472 7.2e-40 169.9 282 69.9
Gohir.D13G058100 Gossypium hirsutum HOM05D006755 ORTHO05D008472 6.1e-39 166.8 282 69.5
Duzib052G1107 Durio zibethinus HOM05D006755 ORTHO05D008472 1.0e-38 166.0 285 65.3
CANSAT25G1651 Cannabis sativa HOM05D006755 ORTHO05D008472 3.0e-38 164.5 314 64.0
PGR142G2394 Punica granatum HOM05D006755 ORTHO05D008472 3.9e-38 164.1 293 65.5
CANSAT25G1067 Cannabis sativa HOM05D006755 ORTHO05D008472 8.8e-38 162.9 314 63.1
Dinv41852 Davidia involucrata HOM05D006755 ORTHO05D008472 2.0e-37 161.8 299 67.9
Gohir.A13G063800 Gossypium hirsutum HOM05D006755 ORTHO05D008472 2.0e-37 161.8 301 50.5
Lj9P409T68 Lonicera japonica HOM05D006755 ORTHO05D008472 3.3e-37 161.0 301 65.8
COL.COLO4_04807 Corchorus olitorius HOM05D006755 ORTHO05D008472 7.4e-37 159.8 282 63.1
Eucgr.I01549 Eucalyptus grandis HOM05D006755 ORTHO05D008472 9.7e-37 159.5 290 68.6
Duzib132G0679 Durio zibethinus HOM05D006755 ORTHO05D008472 4.8e-36 157.1 306 60.1
TAR376G0479 Trochodendron aralioides HOM05D006755 ORTHO05D008472 6.3e-36 156.8 341 59.8
arahy.Tifrunner.gnm1.ann1.0IBU2N Arachis hypogaea HOM05D006755 ORTHO05D008472 1.4e-35 155.6 319 60.5
arahy.Tifrunner.gnm1.ann1.HWJ5MG Arachis hypogaea HOM05D006755 ORTHO05D008472 3.1e-35 154.5 319 59.9
Nn6g31560 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.2e-34 152.5 354 57.1
Hma1.2p1_0052F.1_g030470 Hydrangea macrophylla HOM05D006755 ORTHO05D008472 3.4e-34 151.0 387 54.0
Glyma.11G065700 Glycine max HOM05D006755 ORTHO05D008472 4.5e-34 150.6 329 57.8
Manes.15G113000 Manihot esculenta HOM05D006755 ORTHO05D008472 4.5e-34 150.6 304 61.5
Lj2g0006557 Lotus japonicus HOM05D006755 ORTHO05D008472 1.0e-33 149.4 314 58.9
Aqoxy4G02640 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 8.5e-33 146.4 261 69.0
Psat2g160920 Pisum sativum HOM05D006755 ORTHO05D008472 1.1e-32 146.0 303 61.1
Prupe.8G183200 Prunus persica HOM05D006755 ORTHO05D008472 1.4e-32 145.6 306 63.7
TPR.G18806 Trifolium pratense HOM05D006755 ORTHO05D008472 1.4e-32 145.6 310 59.4
VMungo1215G0649 Vigna mungo HOM05D006755 ORTHO05D008472 1.4e-32 145.6 304 61.8
Phvul.002G027800 Phaseolus vulgaris HOM05D006755 ORTHO05D008472 1.9e-32 145.2 304 62.5
Ca_00389_v3 Cicer arietinum L. HOM05D006755 ORTHO05D008472 4.2e-32 144.1 267 68.2
ECA233G3571 Erigeron canadensis HOM05D006755 ORTHO05D008472 4.2e-32 144.1 306 55.2
Glyma.01G176900 Glycine max HOM05D006755 ORTHO05D008472 4.2e-32 144.1 242 69.4
HPP92_025325 Vanilla planifolia HOM05D006755 ORTHO05D008472 5.5e-32 143.7 240 73.3
DCAR_025005 Daucus carota HOM05D006755 ORTHO05D008472 7.2e-32 143.3 313 61.0
HanXRQChr07g0186241 Helianthus annuus HOM05D006755 ORTHO05D008472 1.2e-31 142.5 239 64.4
Actinidia26119 Actinidia chinensis HOM05D006755 ORTHO05D008472 2.1e-31 141.7 186 83.9
PSO541G3341 Papaver somniferum HOM05D006755 ORTHO05D008472 2.1e-31 141.7 216 55.1
Ciclev10028759m.g Citrus clementina HOM05D006755 ORTHO05D008472 2.7e-31 141.4 327 60.6
AL7G10050 Arabidopsis lyrata HOM05D006755 ORTHO05D008472 3.6e-31 141.0 291 58.1
Aa31LG6G16930 Aethionema arabicum HOM05D006755 ORTHO05D008472 4.7e-31 140.6 306 55.2
Os01g0546500 Oryza sativa ssp. japonica HOM05D006755 ORTHO05D008472 1.0e-30 139.4 210 75.2
Lalb_Chr09g0322551 Lupinus albus HOM05D006755 ORTHO05D008472 1.4e-30 139.0 300 59.3
QL11p057006 Quercus lobata HOM05D006755 ORTHO05D008472 1.4e-30 139.0 285 59.6
Sp7g37600 Schrenkiella parvula HOM05D006755 ORTHO05D008472 1.8e-30 138.7 294 60.5
EL10Ac9g21570 Beta vulgaris HOM05D006755 ORTHO05D008472 2.3e-30 138.3 260 67.3
Carub.0007s0004 Capsella rubella HOM05D006755 ORTHO05D008472 2.3e-30 138.3 281 61.6
CDE04G3036 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 3.9e-30 137.5 283 65.0
AUR62010217 Chenopodium quinoa HOM05D006755 ORTHO05D008472 6.7e-30 136.7 243 71.2
TWI75G0077 Tripterygium wilfordii HOM05D006755 ORTHO05D008472 8.8e-30 136.3 311 59.2
Lsat_1_v5_gn_6_28960 Lactuca sativa HOM05D006755 ORTHO05D008472 2.6e-29 134.8 307 59.9
Medtr8g098445 Medicago truncatula HOM05D006755 ORTHO05D008472 2.6e-29 134.8 232 70.3
vmacro08131 Vaccinium macrocarpon HOM05D006755 ORTHO05D008472 2.6e-29 134.8 184 85.9
CDE02G4616 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 4.4e-29 134.0 293 61.1
CARHR293910 Cardamine hirsuta HOM05D006755 ORTHO05D008472 9.7e-29 132.9 277 61.7
PSO675G0405 Papaver somniferum HOM05D006755 ORTHO05D008472 9.7e-29 132.9 216 53.7
Sc18g0006850 Simmondsia chinensis HOM05D006755 ORTHO05D008472 9.7e-29 132.9 337 58.2
Lj2g0026453 Lotus japonicus HOM05D006755 ORTHO05D008472 1.7e-28 132.1 302 61.3
HPP92_007220 Vanilla planifolia HOM05D006755 ORTHO05D008472 2.2e-28 131.7 349 55.3
Aqoxy6G03058 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 2.8e-28 131.3 342 56.1
BraA06t27405Z Brassica rapa HOM05D006755 ORTHO05D008472 2.8e-28 131.3 281 60.9
Ah.01g010520 Amaranthus hybridus HOM05D006755 ORTHO05D008472 3.7e-28 131.0 259 66.0
Thhalv10005467m.g Eutrema salsugineum HOM05D006755 ORTHO05D008472 1.1e-27 129.4 286 61.9
A06p45360 Brassica napus HOM05D006755 ORTHO05D008472 1.4e-27 129.0 281 61.6
Zm00001eb342190 Zea mays HOM05D006755 ORTHO05D008472 1.4e-27 129.0 271 58.7
MD05G1145100 Malus domestica HOM05D006755 ORTHO05D008472 1.8e-27 128.6 305 61.6
BcaC06g34295 Brassica carinata HOM05D006755 ORTHO05D008472 3.1e-27 127.9 303 57.1
CiPaw.06G113100 Carya illinoinensis HOM05D006755 ORTHO05D008472 3.1e-27 127.9 286 57.0
Medtr5g019860 Medicago truncatula HOM05D006755 ORTHO05D008472 5.3e-27 127.1 232 69.0
THA.LOC104823440 Tarenaya hassleriana HOM05D006755 ORTHO05D008472 5.3e-27 127.1 281 56.9
BcaC06g31423 Brassica carinata HOM05D006755 ORTHO05D008472 1.2e-26 125.9 281 56.9
AUR62013213 Chenopodium quinoa HOM05D006755 ORTHO05D008472 1.2e-26 125.9 234 71.8
BolC7t43606H Brassica oleracea HOM05D006755 ORTHO05D008472 1.5e-26 125.6 303 55.8
C07p30650 Brassica napus HOM05D006755 ORTHO05D008472 2.6e-26 124.8 303 56.1
Sed0010179 Sechium edule HOM05D006755 ORTHO05D008472 4.5e-26 124.0 315 59.4
AT4G38150 Arabidopsis thaliana HOM05D006755 ORTHO05D008472 5.9e-26 123.6 179 44.7
SHI05798 Sapria himalayana HOM05D006755 ORTHO05D008472 1.0e-25 122.9 182 78.0
CsaV3_7G002250 Cucumis sativus L. HOM05D006755 ORTHO05D008472 1.3e-25 122.5 310 60.0
Cfa005407 Carpinus fangiana HOM05D006755 ORTHO05D008472 6.5e-25 120.2 286 55.9
Sabra04G0141300 Salix brachista HOM05D006755 ORTHO05D008472 3.2e-24 117.9 364 53.0
MELO3C024165.2 Cucumis melo HOM05D006755 ORTHO05D008472 2.7e-23 114.8 319 56.7
Nn1g06229 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.0e-22 112.8 103 59.2
SalBow1G4250 Salvia bowleyana HOM05D006755 ORTHO05D008472 1.0e-22 112.8 283 45.2
Nn3g19301 Nelumbo nucifera HOM05D006755 ORTHO05D008472 3.9e-22 110.9 103 57.3
Actinidia20592 Actinidia chinensis HOM05D006755 ORTHO05D008472 6.7e-22 110.2 58 91.4
ATR0605G371 Amborella trichopoda HOM05D006755 ORTHO05D008472 3.3e-21 107.8 111 56.8
Haze_01948 Corylus avellana HOM05D006755 ORTHO05D008472 1.7e-20 105.5 153 45.8
FvH4_2g17180 Fragaria vesca HOM05D006755 ORTHO05D008472 1.4e-19 102.4 314 56.7
Potri.004G209500 Populus trichocarpa HOM05D006755 ORTHO05D008472 1.8e-19 102.1 367 49.6
FAN15G2937 Fragaria x ananassa HOM05D006755 ORTHO05D008472 3.1e-19 101.3 311 57.2
MBI01_g31986_MAGBIO Magnolia biondii HOM05D006755 ORTHO05D008472 4.1e-19 100.9 204 71.1
GSVIVG01023844001 Vitis vinifera HOM05D006755 ORTHO05D008472 7.0e-19 100.1 289 30.4
SEGI_20822 Sequoiadendron giganteum HOM05D006755 ORTHO05D008472 1.2e-18 99.4 216 68.1
RcHm_v2.0_Chr6g0281671 Rosa chinensis HOM05D006755 ORTHO05D008472 1.6e-18 99.0 180 43.3
Hund00104 Selenicereus undatus HOM05D006755 ORTHO05D001720 2.6e-18 98.2 126 49.2
Ah.01g017780 Amaranthus hybridus HOM05D006755 ORTHO05D008472 5.9e-18 97.1 114 50.0
FAN27G0618 Fragaria x ananassa HOM05D006755 ORTHO05D008472 2.9e-17 94.7 314 55.7
ClCG02G003160 Citrullus lanatus HOM05D006755 ORTHO05D008472 8.5e-17 93.2 333 53.5
Nn6g31556 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.5e-16 92.4 172 57.6
Sed0025141 Sechium edule HOM05D006755 ORTHO05D008472 4.2e-16 90.9 114 48.2
ATR0693G165 Amborella trichopoda HOM05D002804 ORTHO05D003755 6.3e-12 77.0 63 54.0
Lj6P318T4 Lonicera japonica HOM05D006755 ORTHO05D008472 2.4e-11 75.1 38 97.4
TAR636G2693 Trochodendron aralioides HOM05D002804 ORTHO05D003755 2.4e-11 75.1 63 54.0
Nn5g27913 Nelumbo nucifera HOM05D002804 ORTHO05D003755 2.0e-10 72.0 71 52.1
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 2.2e-09 68.6 69 50.7
Manes.04G038100 Manihot esculenta HOM05D002804 ORTHO05D003755 6.5e-09 67.0 63 52.4
PSO357G0404 Papaver somniferum HOM05D002804 ORTHO05D003755 6.5e-09 67.0 90 46.7
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 1.9e-08 65.5 114 35.1
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.9e-08 65.5 114 35.1
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.2e-08 64.7 67 50.7
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 3.2e-08 64.7 69 47.8
Oeu053880.1 Olea europaea HOM05D043847 ORTHO05D008472 4.2e-08 64.3 49 71.4
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 7.2e-08 63.5 69 46.4
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 9.4e-08 63.2 100 38.0
PSO170G1624 Papaver somniferum HOM05D002804 ORTHO05D003755 2.1e-07 62.0 128 38.3
Lsat_1_v5_gn_9_84161 Lactuca sativa HOM05D002804 ORTHO05D003755 2.7e-07 61.6 61 47.5
MD05G1145400 Malus domestica HOM05D006755 ORTHO05D008472 4.7e-07 60.8 35 85.7
Nn5g27110 Nelumbo nucifera HOM05D006755 ORTHO05D008472 4.7e-07 60.8 146 75.3
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 4.7e-07 60.8 63 44.4
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 6.1e-07 60.5 61 45.9
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 1.4e-06 59.3 87 42.5
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 2.3e-06 58.5 91 37.4
Aqoxy1G02792 Aquilegia oxysepala HOM05D002804 ORTHO05D003755 3.0e-06 58.2 50 50.0
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 3.0e-06 58.2 98 39.8
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 5.2e-06 57.4 96 35.4
Rhsim11G0111400 Rhododendron simsii HOM05D002962 ORTHO05D003280 5.2e-06 57.4 136 30.9
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 6.8e-06 57.0 93 36.6


User provided reference genes

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