Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009973g0040 Nicotiana tabacum HOM05D007202 ORTHO05D009125 9.0e-133 478.4 310 100.0
Nitab4.5_0006691g0020 Nicotiana tabacum HOM05D007202 ORTHO05D009125 8.1e-126 455.3 310 96.5
PGSC0003DMG400032545 Solanum tuberosum HOM05D007202 ORTHO05D009125 3.9e-112 409.8 310 89.7
Solyc04g009220.2 Solanum lycopersicum HOM05D007202 ORTHO05D009125 5.1e-112 409.5 310 89.0
Sopen04g004350 Solanum pennellii HOM05D007202 ORTHO05D009125 2.5e-111 407.1 310 86.1
CAN.G619.3 Capsicum annuum HOM05D007202 ORTHO05D009125 8.5e-107 392.1 310 84.8
Peaxi162Scf00681g00018 Petunia axillaris HOM05D007202 ORTHO05D009125 8.8e-88 328.9 281 84.0
Dinv07882 Davidia involucrata HOM05D007202 ORTHO05D009125 2.6e-71 274.2 310 67.7
Lj3C848G3 Lonicera japonica HOM05D007202 ORTHO05D009125 1.2e-68 265.4 310 45.2
Migut.I00254 Erythranthe guttata HOM05D007202 ORTHO05D009125 2.7e-68 264.2 311 55.3
Oeu037581.1 Olea europaea HOM05D007202 ORTHO05D009125 1.6e-65 255.0 311 54.0
GSVIVG01026178001 Vitis vinifera HOM05D007202 ORTHO05D009125 1.5e-63 248.4 305 66.6
CSS0048316 Camellia sinensis var. sinensis HOM05D007202 ORTHO05D009125 7.5e-63 246.1 311 65.0
TAR622G0387 Trochodendron aralioides HOM05D007202 ORTHO05D009125 7.5e-63 246.1 308 43.5
Prupe.7G271800 Prunus persica HOM05D007202 ORTHO05D009125 1.3e-62 245.4 308 65.6
CSS0032654 Camellia sinensis var. sinensis HOM05D007202 ORTHO05D009125 1.7e-62 245.0 311 64.6
QL12p025863 Quercus lobata HOM05D007202 ORTHO05D009125 2.7e-60 237.7 308 61.7
Atru.chr11.1126 Acer truncatum HOM05D007202 ORTHO05D009125 3.5e-60 237.3 309 62.5
SalBow5G3041 Salvia bowleyana HOM05D007202 ORTHO05D009125 5.9e-60 236.5 309 52.4
SalBow5G0881 Salvia bowleyana HOM05D007202 ORTHO05D009125 7.8e-60 236.1 311 52.1
Cc07_g16390 Coffea canephora HOM05D007202 ORTHO05D009125 3.8e-59 233.8 310 62.3
Actinidia21102 Actinidia chinensis HOM05D007202 ORTHO05D009125 6.6e-59 233.0 310 62.6
Haze_11774 Corylus avellana HOM05D007202 ORTHO05D009125 4.3e-58 230.3 306 62.1
vmacro08165 Vaccinium macrocarpon HOM05D007202 ORTHO05D009125 9.5e-58 229.2 312 60.6
CAN.G298.25 Capsicum annuum HOM05D007202 ORTHO05D009125 3.6e-57 227.3 310 58.7
Cfa008759 Carpinus fangiana HOM05D007202 ORTHO05D009125 4.7e-57 226.9 306 61.4
Nn7g37484 Nelumbo nucifera HOM05D007202 ORTHO05D009125 6.8e-56 223.0 309 60.8
Sabra05G0074700 Salix brachista HOM05D007202 ORTHO05D009125 8.9e-56 222.6 310 61.3
Ciclev10030697m.g Citrus clementina HOM05D007202 ORTHO05D009125 1.2e-55 222.2 310 59.4
AUR62017720 Chenopodium quinoa HOM05D007202 ORTHO05D009125 1.5e-55 221.9 310 57.7
RcHm_v2.0_Chr4g0408911 Rosa chinensis HOM05D007202 ORTHO05D009125 1.5e-55 221.9 305 61.0
SGA_v2.0_scaffold102G29846 Striga asiatica HOM05D007202 ORTHO05D009125 1.5e-55 221.9 309 50.8
Gohir.D02G188900 Gossypium hirsutum HOM05D007202 ORTHO05D009125 5.8e-55 219.9 312 57.7
Eucgr.J00877 Eucalyptus grandis HOM05D007202 ORTHO05D009125 1.7e-54 218.4 310 60.3
Aqoxy6G00861 Aquilegia oxysepala HOM05D007202 ORTHO05D009125 2.2e-54 218.0 313 58.1
Potri.005G090600 Populus trichocarpa HOM05D007202 ORTHO05D009125 4.9e-54 216.9 309 60.5
FAN12G2678 Fragaria x ananassa HOM05D007202 ORTHO05D009125 8.3e-54 216.1 307 58.6
Glyma.20G104200 Glycine max HOM05D007202 ORTHO05D009125 8.3e-54 216.1 311 60.8
Sc10g0006710 Simmondsia chinensis HOM05D007202 ORTHO05D009125 1.1e-53 215.7 307 58.0
Hund26048 Selenicereus undatus HOM05D007202 ORTHO05D009125 1.4e-53 215.3 309 57.0
EL10Ac9g22973 Beta vulgaris HOM05D007202 ORTHO05D009125 2.4e-53 214.5 310 57.7
FAN07G0522 Fragaria x ananassa HOM05D007202 ORTHO05D009125 2.4e-53 214.5 308 58.1
ClCG01G011340 Citrullus lanatus HOM05D007202 ORTHO05D009125 4.1e-53 213.8 316 56.6
FvH4_4g11722 Fragaria vesca HOM05D007202 ORTHO05D009125 4.1e-53 213.8 307 58.0
FvH4_4g11723 Fragaria vesca HOM05D007202 ORTHO05D009125 4.1e-53 213.8 307 58.0
FAN12G3533 Fragaria x ananassa HOM05D007202 ORTHO05D009125 5.4e-53 213.4 307 58.3
Gohir.A03G165700 Gossypium hirsutum HOM05D007202 ORTHO05D009125 1.7e-51 208.4 312 57.7
Thecc.02G157500 Theobroma cacao HOM05D007202 ORTHO05D009125 1.7e-51 208.4 311 58.5
Phvul.007G015700 Phaseolus vulgaris HOM05D007202 ORTHO05D009125 3.0e-51 207.6 309 59.9
Duzib132G0783 Durio zibethinus HOM05D007202 ORTHO05D009125 8.6e-51 206.1 311 58.5
MSTRG.22930 Avicennia marina HOM05D007202 ORTHO05D009125 1.9e-50 204.9 305 49.8
CiPaw.06G061800 Carya illinoinensis HOM05D007202 ORTHO05D009125 1.9e-50 204.9 306 58.2
PSO063G1738 Papaver somniferum HOM05D007202 ORTHO05D009125 2.5e-50 204.5 312 57.4
DCAR_026889 Daucus carota HOM05D007202 ORTHO05D009125 3.3e-50 204.1 306 58.2
VMungo0720G1420 Vigna mungo HOM05D007202 ORTHO05D009125 7.3e-50 203.0 310 58.4
PSO782G4392 Papaver somniferum HOM05D007202 ORTHO05D009125 1.6e-49 201.8 313 55.9
arahy.Tifrunner.gnm1.ann1.EU7MKH Arachis hypogaea HOM05D007202 ORTHO05D009125 2.1e-49 201.4 301 58.1
Lalb_Chr02g0143591 Lupinus albus HOM05D007202 ORTHO05D009125 3.6e-49 200.7 302 59.3
Ah.03g147890 Amaranthus hybridus HOM05D007202 ORTHO05D009125 6.2e-49 199.9 312 58.7
arahy.Tifrunner.gnm1.ann1.U9PBTF Arachis hypogaea HOM05D007202 ORTHO05D009125 6.2e-49 199.9 301 57.5
TWI53G0827 Tripterygium wilfordii HOM05D007202 ORTHO05D009125 6.2e-49 199.9 310 52.9
MBI07_g03828_MAGBIO Magnolia biondii HOM05D007202 ORTHO05D009125 5.2e-48 196.8 322 57.1
Lj5g0012863 Lotus japonicus HOM05D007202 ORTHO05D009125 2.6e-47 194.5 295 59.0
Manes.10G042000 Manihot esculenta HOM05D007202 ORTHO05D009125 5.8e-47 193.4 310 56.8
HanXRQChr13g0392131 Helianthus annuus HOM05D007202 ORTHO05D009125 1.7e-46 191.8 304 56.9
CANSAT54G1393 Cannabis sativa HOM05D007202 ORTHO05D009125 3.7e-46 190.7 299 57.9
CsaV3_5G014410 Cucumis sativus L. HOM05D007202 ORTHO05D009125 8.3e-46 189.5 310 56.8
Ca_11225_v3 Cicer arietinum L. HOM05D007202 ORTHO05D009125 1.9e-45 188.3 314 44.6
Hma1.2p1_2428F.1_g321970 Hydrangea macrophylla HOM05D007202 ORTHO05D009125 1.9e-45 188.3 310 55.8
Gorai.005G211700 Gossypium raimondii HOM05D007202 ORTHO05D009125 3.2e-45 187.6 312 55.4
THA.LOC104800801 Tarenaya hassleriana HOM05D007202 ORTHO05D009125 3.2e-45 187.6 307 57.0
Medtr1g114190 Medicago truncatula HOM05D000730 ORTHO05D009125 1.3e-43 182.2 312 44.2
Rhsim09G0070400 Rhododendron simsii HOM05D007202 ORTHO05D009125 1.1e-42 179.1 304 56.6
ClCG01G011360 Citrullus lanatus HOM05D007202 ORTHO05D009125 4.3e-42 177.2 330 47.9
TPR.G4127 Trifolium pratense HOM05D007202 ORTHO05D009125 5.6e-42 176.8 302 44.4
Psat6g233440 Pisum sativum HOM05D007202 ORTHO05D009125 2.1e-41 174.9 302 37.4
Sed0015759 Sechium edule HOM05D007202 ORTHO05D009125 8.1e-41 172.9 310 55.8
Sp6g34640 Schrenkiella parvula HOM05D007202 ORTHO05D009125 4.0e-40 170.6 317 53.6
Aa31LG3G18260 Aethionema arabicum HOM05D007202 ORTHO05D009766 5.2e-40 170.2 318 53.8
Carub.0006s0720 Capsella rubella HOM05D007202 ORTHO05D009125 5.2e-40 170.2 318 52.8
AL6G18720 Arabidopsis lyrata HOM05D007202 ORTHO05D009125 6.8e-40 169.9 318 52.8
BraA10t44884Z Brassica rapa HOM05D007202 ORTHO05D009125 8.9e-40 169.5 311 53.1
BolC9t59607H Brassica oleracea HOM05D007202 ORTHO05D009125 4.4e-39 167.2 314 52.5
AT5G08310 Arabidopsis thaliana HOM05D007202 ORTHO05D009125 9.9e-39 166.0 318 51.9
Thhalv10015588m.g Eutrema salsugineum HOM05D007202 ORTHO05D009125 2.2e-38 164.9 313 52.7
unitig_26.g9680 Utricularia gibba HOM05D007202 ORTHO05D009125 8.3e-38 162.9 238 39.9
CARHR204810 Cardamine hirsuta HOM05D007202 ORTHO05D009125 1.1e-37 162.5 314 48.1
PGR142G1500 Punica granatum HOM05D007202 ORTHO05D009125 2.4e-37 161.4 313 47.3
CDE05G0489 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 7.1e-37 159.8 320 51.2
C09p68630 Brassica napus HOM05D007202 ORTHO05D009125 4.6e-36 157.1 314 51.6
A10p28370 Brassica napus HOM05D007202 ORTHO05D009125 1.3e-35 155.6 314 51.3
HPP92_022482 Vanilla planifolia HOM05D007202 ORTHO05D009125 1.7e-35 155.2 322 49.7
ECA233G0992 Erigeron canadensis HOM05D000200 ORTHO05D001546 8.9e-32 142.9 304 50.7
SEGI_11175 Sequoiadendron giganteum HOM05D007202 ORTHO05D009125 1.4e-29 135.6 316 50.0
CDE05G0100 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 4.3e-26 124.0 111 48.6
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 9.6e-26 122.9 306 49.0
ATR0712G074 Amborella trichopoda HOM05D007202 ORTHO05D009125 9.0e-24 116.3 316 28.2
ATR1149G109 Amborella trichopoda HOM05D007202 ORTHO05D009125 7.8e-20 103.2 318 45.9
COL.COLO4_33057 Corchorus olitorius HOM05D007202 ORTHO05D009125 2.3e-19 101.7 125 46.4
Dinv07880 Davidia involucrata HOM05D007202 ORTHO05D009125 2.6e-15 88.2 116 44.0
BcaC03g13219 Brassica carinata HOM05D007202 ORTHO05D009125 5.4e-13 80.5 87 44.8
QL03p045855 Quercus lobata HOM05D007202 ORTHO05D009125 1.2e-12 79.3 95 46.3
Zm00001eb009120 Zea mays HOM05D007202 ORTHO05D009125 5.6e-10 70.5 93 40.9
AagrBONN_evm.TU.Sc2ySwM_117.359 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.6e-07 60.1 122 28.7
ATR0049G008 Amborella trichopoda HOM05D002244 ORTHO05D002269 1.7e-06 58.9 108 33.3
AagrBONN_evm.TU.Sc2ySwM_344.1840 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.9e-06 58.2 122 27.9
AagrBONN_evm.TU.Sc2ySwM_344.4257 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.9e-06 58.2 122 27.9
AagrBONN_evm.TU.Sc2ySwM_362.565 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.4e-06 57.0 124 26.6
AagrBONN_evm.TU.Sc2ySwM_368.1657 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.4e-06 57.0 111 27.9
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 8.4e-06 56.6 118 33.9


User provided reference genes

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