Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 0.0e+00 1986.8 1020 100.0
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 0.0e+00 1602.0 1038 80.5
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1503.8 1024 78.5
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1487.2 1117 73.9
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 0.0e+00 1349.3 784 89.9
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 0.0e+00 1305.0 811 82.9
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 8.4e-311 1070.5 1082 55.3
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 3.2e-307 1058.5 1038 56.2
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 3.5e-306 1055.0 1046 56.5
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 5.1e-305 1051.2 978 59.0
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 5.5e-299 1031.2 1033 55.8
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 7.7e-293 1010.7 1059 54.5
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 4.3e-288 995.0 1026 54.6
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 7.4e-288 994.2 1009 55.8
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 3.1e-286 988.8 1049 53.5
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 2.6e-285 985.7 1003 54.5
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 4.5e-285 984.9 1020 53.4
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 3.8e-284 981.9 1036 52.6
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 3.8e-284 981.9 1037 54.6
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 6.5e-284 981.1 1047 52.3
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 1.1e-283 980.3 1003 54.7
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 1.9e-283 979.5 1028 52.7
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 3.2e-283 978.8 1032 52.8
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 3.2e-283 978.8 1050 52.3
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 7.2e-283 977.6 1048 53.1
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 1.6e-282 976.5 1062 53.0
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 2.1e-282 976.1 1054 52.5
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 1.4e-281 973.4 1048 53.0
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 2.3e-281 972.6 1074 52.8
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 1.5e-280 969.9 1059 52.2
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 2.4e-278 962.6 1026 51.3
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 7.0e-278 961.1 1026 52.4
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 1.5e-277 959.9 1060 51.9
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 1.9e-275 953.0 1051 52.1
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 4.2e-275 951.8 1054 50.4
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 1.6e-274 949.9 1025 53.5
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 1.5e-272 943.3 1016 53.2
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 9.7e-272 940.6 992 54.3
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 6.3e-271 937.9 1013 52.8
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 3.1e-270 935.6 1006 53.6
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 9.1e-270 934.1 1046 51.6
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 1.3e-268 930.2 1050 51.0
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 3.8e-268 928.7 1043 50.2
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 6.5e-268 927.9 1034 50.1
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 1.3e-263 913.7 1045 50.2
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 2.4e-262 909.4 1042 51.7
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 3.1e-262 909.1 1058 50.4
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 4.1e-262 908.7 1043 50.3
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 4.5e-261 905.2 994 50.5
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 1.7e-260 903.3 1025 51.6
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 1.9e-259 899.8 1052 49.9
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 1.2e-258 897.1 1035 51.0
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 2.1e-258 896.3 1030 48.7
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 4.0e-257 892.1 1023 49.6
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 3.7e-255 885.6 1041 48.3
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 6.3e-255 884.8 1052 50.5
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 2.4e-254 882.9 1048 49.1
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 3.1e-254 882.5 1027 51.3
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 9.1e-254 880.9 1031 49.8
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 6.6e-252 874.8 1051 49.0
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 1.5e-251 873.6 1001 49.2
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 1.6e-250 870.2 1069 49.5
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 1.4e-249 867.1 1028 48.1
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 2.3e-249 866.3 1028 47.9
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 6.8e-249 864.8 995 49.0
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 4.4e-248 862.1 1030 48.0
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 9.8e-248 860.9 1053 49.2
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 3.7e-247 859.0 1052 48.7
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 3.7e-247 859.0 1003 50.0
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 3.2e-246 855.9 1028 50.1
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 1.2e-245 854.0 1069 49.3
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 8.6e-244 847.8 1061 50.0
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 7.5e-240 834.7 829 55.1
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 1.7e-239 833.6 1028 47.4
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 1.9e-238 830.1 1051 45.1
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 3.2e-238 829.3 893 52.6
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 1.0e-236 824.3 1045 48.3
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 1.1e-227 794.3 1216 42.8
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 3.1e-225 786.2 1019 47.1
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 1.5e-224 783.9 1031 47.4
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 3.0e-220 769.6 1013 44.8
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 3.9e-220 769.2 810 54.3
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 1.3e-215 754.2 1038 44.1
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 9.9e-208 728.0 1231 40.9
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 2.2e-207 726.9 1049 41.6
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 4.3e-171 606.3 712 47.6
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 1.0e-156 558.5 1013 38.0
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 3.1e-145 520.4 583 52.5
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 5.4e-137 493.0 532 51.3
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 5.2e-132 476.5 530 50.6
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 8.0e-125 452.6 1066 31.4
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 2.4e-121 441.0 452 52.2
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 7.0e-121 439.5 1054 32.2
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 1.3e-119 435.3 482 50.0
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 5.2e-116 423.3 1032 31.9
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 4.1e-113 413.7 692 40.2
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 5.6e-110 403.3 430 51.9
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 4.7e-101 373.6 758 36.7
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.9e-90 337.8 500 37.4
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 8.4e-90 336.3 593 39.8
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 2.4e-76 291.6 345 49.0
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 5.3e-76 290.4 397 39.0
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.2e-74 285.0 464 42.0
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 9.7e-70 269.6 165 83.0
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 5.3e-68 263.8 442 38.2
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 5.0e-66 257.3 402 40.3
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.5e-54 219.2 138 79.0
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 3.1e-52 211.5 231 53.7
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.7e-50 205.7 354 40.4
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 2.1e-48 198.7 397 37.0
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 2.7e-48 198.4 166 63.3
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.4e-47 196.1 190 54.7
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 8.0e-40 170.2 250 38.0
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 5.7e-38 164.1 263 37.3
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 2.2e-37 162.2 212 46.7
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 4.2e-33 147.9 194 48.5
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 1.6e-27 129.4 209 43.1
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 7.7e-27 127.1 860 23.5
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 6.5e-26 124.0 335 28.4
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 2.8e-24 118.6 414 29.5
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 6.1e-24 117.5 132 47.7
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 4.0e-23 114.8 177 41.2
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 1.2e-22 113.2 166 41.6
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 3.1e-20 105.1 152 44.7
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 7.0e-20 104.0 79 60.8
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 7.0e-20 104.0 79 68.4
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 2.0e-19 102.4 283 33.6
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 2.0e-19 102.4 854 24.4
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 1.3e-18 99.8 240 36.2
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 3.3e-17 95.1 84 60.7
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 3.3e-17 95.1 69 72.5
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 6.1e-16 90.9 91 49.5
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 1.4e-15 89.7 107 49.5
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 2.3e-15 89.0 144 43.1
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 8.9e-15 87.0 100 42.0
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 1.5e-14 86.3 159 34.0
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 2.0e-14 85.9 89 50.6
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.7e-13 82.8 130 39.2
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 3.7e-13 81.6 95 41.1
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 3.2e-12 78.6 120 42.5
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 5.0e-10 71.2 63 61.9
Hma1.2p1_0148F.1_g065920 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 5.6e-09 67.8 143 35.7
QL12p004446 Quercus lobata HOM05D004277 ORTHO05D050645 2.8e-08 65.5 59 54.2
TPR.G236 Trifolium pratense HOM05D004277 ORTHO05D005148 5.2e-07 61.2 53 58.5
Zm00001eb086610 Zea mays HOM05D004277 ORTHO05D005148 3.4e-06 58.5 103 33.0
Zm00001eb307980 Zea mays HOM05D004277 ORTHO05D005148 4.4e-06 58.2 103 34.0
SHI21618 Sapria himalayana HOM05D004277 ORTHO05D005148 9.8e-06 57.0 63 57.1


User provided reference genes

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