Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 1.7e-206 722.6 422 100.0
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 5.6e-197 691.0 417 94.7
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 3.1e-171 605.5 417 81.8
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 5.8e-170 601.3 417 80.6
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 1.2e-162 577.0 419 79.2
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 6.6e-158 561.2 427 78.7
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 1.3e-156 557.0 409 77.8
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 6.2e-140 501.5 419 66.8
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 1.8e-139 500.0 423 66.9
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 5.1e-134 481.9 419 64.7
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 1.9e-133 479.9 422 64.0
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 2.6e-130 469.5 429 64.6
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 2.2e-129 466.5 420 66.0
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 4.6e-127 458.8 435 60.0
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 1.4e-126 457.2 426 64.6
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 1.4e-126 457.2 415 63.9
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 2.5e-125 453.0 447 61.3
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 1.4e-123 447.2 426 62.4
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 1.8e-123 446.8 418 69.6
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 2.4e-123 446.4 425 59.8
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 4.1e-123 445.7 430 60.9
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 4.1e-123 445.7 418 69.4
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 1.3e-121 440.7 430 60.0
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 1.9e-120 436.8 420 60.5
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 3.2e-120 436.0 446 59.4
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 7.2e-120 434.9 422 61.1
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 1.6e-119 433.7 414 63.0
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.6e-119 433.7 422 61.4
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 2.1e-119 433.3 426 59.6
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 3.6e-119 432.6 422 61.1
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 3.6e-119 432.6 422 61.1
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 4.7e-119 432.2 414 60.4
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 6.1e-119 431.8 492 55.9
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 7.9e-119 431.4 419 59.9
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 6.7e-118 428.3 420 61.0
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 8.8e-118 427.9 424 60.4
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 8.8e-118 427.9 430 60.5
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 1.5e-117 427.2 435 60.2
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 9.7e-117 424.5 419 58.9
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 1.3e-116 424.1 417 58.8
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 2.2e-116 423.3 425 60.2
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 3.7e-116 422.5 417 60.4
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 3.7e-116 422.5 428 58.4
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 6.3e-116 421.8 428 58.6
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 8.2e-116 421.4 425 60.0
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.1e-115 421.0 427 62.8
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 3.1e-115 419.5 420 60.2
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 1.2e-114 417.5 419 58.5
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 7.7e-114 414.8 429 58.3
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 1.0e-113 414.5 418 58.1
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 1.9e-112 410.2 433 62.1
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 9.4e-112 407.9 426 58.0
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 2.7e-111 406.4 413 57.4
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 8.8e-110 401.4 421 58.4
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 1.1e-109 401.0 399 59.4
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 3.7e-108 396.0 423 58.2
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 6.3e-108 395.2 449 53.9
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 3.1e-107 392.9 420 58.3
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 7.0e-107 391.7 428 57.2
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 9.1e-107 391.3 420 57.1
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 3.5e-106 389.4 429 57.3
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 2.9e-105 386.3 472 51.9
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 3.8e-105 386.0 422 55.5
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 5.0e-105 385.6 422 55.0
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 9.4e-104 381.3 425 56.0
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 1.4e-102 377.5 430 55.3
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 8.8e-102 374.8 419 55.8
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 3.3e-101 372.9 374 57.8
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 1.3e-100 370.9 375 57.9
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 3.7e-100 369.4 377 59.2
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 3.7e-100 369.4 415 54.9
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 8.2e-100 368.2 418 55.5
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 9.1e-99 364.8 415 56.1
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 4.5e-98 362.5 410 55.4
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 5.9e-98 362.1 423 55.1
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 3.8e-97 359.4 422 55.2
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 3.8e-97 359.4 418 51.7
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 1.5e-96 357.5 298 65.4
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 1.5e-96 357.5 421 54.2
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 2.5e-96 356.7 437 52.2
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 2.5e-96 356.7 423 53.7
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 1.6e-95 354.0 404 55.2
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 2.7e-95 353.2 405 53.6
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 1.5e-93 347.4 423 52.5
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 2.6e-93 346.7 417 50.6
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 5.7e-93 345.5 434 52.1
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 1.3e-92 344.4 405 50.1
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 3.7e-92 342.8 411 55.7
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 6.3e-92 342.0 411 53.0
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 8.3e-92 341.7 413 53.3
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 4.1e-91 339.3 404 51.7
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 1.2e-90 337.8 452 48.2
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 1.3e-89 334.3 372 53.5
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 2.9e-89 333.2 405 51.4
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 2.5e-88 330.1 402 52.7
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 7.2e-88 328.6 428 49.8
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 1.2e-87 327.8 426 49.8
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 2.1e-87 327.0 465 46.2
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 4.7e-87 325.9 374 58.3
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 8.0e-87 325.1 426 49.8
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 4.4e-85 319.3 391 51.9
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 4.4e-85 319.3 391 51.9
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 9.8e-85 318.2 396 55.6
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 2.4e-83 313.5 281 64.8
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 1.9e-80 303.9 352 51.1
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 5.6e-80 302.4 415 50.4
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 3.7e-76 289.7 399 49.6
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 4.1e-75 286.2 422 46.4
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 4.1e-75 286.2 312 55.1
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 9.5e-72 275.0 265 60.0
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 1.1e-67 261.5 264 58.0
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 1.4e-67 261.2 332 49.1
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 7.8e-66 255.4 274 58.0
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 1.0e-65 255.0 306 51.6
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 1.1e-64 251.5 421 44.4
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 3.4e-61 240.0 422 45.3
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 3.9e-57 226.5 275 54.5
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 6.2e-55 219.2 270 53.7
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 4.0e-54 216.5 271 50.9
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 6.8e-54 215.7 181 63.0
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 1.7e-52 211.1 272 51.1
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 6.4e-52 209.1 270 50.4
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 1.1e-51 208.4 183 65.6
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 1.4e-51 208.0 439 37.8
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 9.2e-51 205.3 349 41.8
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 1.0e-49 201.8 272 50.0
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 3.9e-49 199.9 349 43.0
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 1.6e-47 194.5 389 42.4
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 4.7e-47 193.0 315 44.4
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 1.1e-46 191.8 268 46.6
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 8.4e-44 182.2 429 37.8
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 4.2e-43 179.9 198 56.1
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 4.2e-43 179.9 269 49.4
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 6.0e-42 176.0 269 45.4
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 1.5e-40 171.4 130 66.2
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 2.8e-39 167.2 130 64.6
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 7.6e-37 159.1 409 36.4
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 8.1e-31 139.0 125 64.8
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 7.6e-29 132.5 146 52.7
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 4.2e-27 126.7 160 50.6
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 1.3e-25 121.7 459 29.4
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 2.3e-25 120.9 143 51.0
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 2.3e-25 120.9 150 50.0
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 2.8e-15 87.4 172 37.8
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 1.1e-11 75.5 83 48.2
CAN.G165.26 Capsicum annuum HOM05D000541 ORTHO05D000137 2.5e-11 74.3 68 66.2
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 2.2e-07 61.2 205 31.2
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 2.8e-07 60.8 36 72.2


User provided reference genes

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