Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 3.7e-300 1034.2 583 100.0
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 2.0e-290 1001.9 583 94.9
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 4.1e-198 695.3 583 70.2
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 5.9e-197 691.4 583 69.6
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 2.9e-196 689.1 583 69.5
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 4.0e-185 652.1 580 65.3
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 7.2e-179 631.3 509 71.3
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 2.9e-159 566.2 586 53.6
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 3.9e-156 555.8 580 56.6
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 9.5e-155 551.2 586 52.9
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 2.0e-152 543.5 598 50.7
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 3.7e-151 539.3 582 51.7
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 6.6e-148 528.5 580 53.1
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.5e-147 527.3 577 53.2
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 3.6e-146 522.7 582 53.3
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 2.0e-144 516.9 580 54.8
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 9.8e-144 514.6 575 52.3
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 2.3e-140 503.4 587 53.2
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 3.6e-138 496.1 555 52.6
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 3.4e-136 489.6 583 49.6
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 2.1e-133 480.3 541 48.2
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 2.1e-133 480.3 576 50.7
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 2.7e-133 479.9 553 49.7
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 7.8e-133 478.4 567 48.3
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.3e-132 476.9 575 48.9
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 3.9e-132 476.1 576 49.7
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 4.7e-130 469.2 545 48.4
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 6.2e-130 468.8 578 47.1
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 4.0e-129 466.1 578 48.8
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 4.0e-129 466.1 532 48.9
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 4.0e-129 466.1 574 47.6
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 5.2e-129 465.7 578 47.4
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 1.2e-128 464.5 579 48.9
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 2.6e-128 463.4 560 46.8
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 3.4e-128 463.0 576 48.1
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.1e-126 458.0 545 47.5
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 1.9e-126 457.2 589 46.5
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 9.3e-126 454.9 565 46.7
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 2.7e-125 453.4 598 49.7
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 6.0e-125 452.2 576 46.4
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 2.3e-124 450.3 579 49.7
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 8.7e-124 448.4 535 47.9
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 1.1e-123 448.0 645 44.5
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.1e-123 448.0 575 47.1
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 1.3e-122 444.5 565 44.8
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 2.8e-122 443.4 587 46.3
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 3.1e-121 439.9 580 47.1
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 4.0e-121 439.5 582 44.7
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 4.0e-121 439.5 553 45.4
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 4.0e-121 439.5 577 44.2
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 1.2e-120 438.0 588 46.3
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 2.0e-120 437.2 565 45.7
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 3.4e-120 436.4 553 45.2
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 9.9e-120 434.9 543 46.8
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 1.7e-119 434.1 555 44.7
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 1.7e-119 434.1 580 46.7
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 4.9e-119 432.6 559 44.0
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.4e-118 431.0 580 45.7
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.9e-118 430.6 577 45.9
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 3.2e-118 429.9 558 47.5
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 4.2e-118 429.5 580 47.1
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 5.4e-118 429.1 580 45.2
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 9.3e-118 428.3 580 45.3
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 9.3e-118 428.3 553 45.6
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 6.0e-117 425.6 584 43.7
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 6.0e-117 425.6 542 45.2
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 1.7e-116 424.1 564 43.8
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 8.7e-116 421.8 583 43.4
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 7.4e-115 418.7 569 44.6
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.6e-114 417.5 548 46.5
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 2.8e-114 416.8 545 46.4
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 1.8e-113 414.1 582 43.1
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.5e-112 411.0 552 42.6
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.5e-112 411.0 450 53.6
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 5.8e-112 409.1 579 45.6
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 9.9e-112 408.3 582 42.1
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 9.9e-112 408.3 543 44.4
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 1.7e-111 407.5 576 42.0
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 1.7e-111 407.5 576 42.0
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 2.2e-111 407.1 590 42.4
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 2.2e-111 407.1 547 42.6
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 6.4e-111 405.6 569 44.5
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 4.2e-110 402.9 577 43.7
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 5.5e-110 402.5 565 42.5
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 9.3e-110 401.7 571 42.0
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 4.6e-109 399.4 571 41.0
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 7.9e-109 398.7 534 42.3
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 1.0e-108 398.3 582 44.8
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 1.0e-108 398.3 588 41.0
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 6.7e-108 395.6 535 42.6
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 1.1e-107 394.8 532 42.9
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 6.2e-106 389.0 472 49.6
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 3.1e-105 386.7 580 42.2
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 2.0e-104 384.0 537 46.2
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 2.6e-104 383.6 543 42.9
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 3.4e-104 383.3 535 42.1
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 5.8e-104 382.5 558 44.1
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 6.5e-103 379.0 576 40.6
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 6.5e-103 379.0 576 40.5
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 1.1e-102 378.3 580 41.7
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 1.9e-102 377.5 576 40.8
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 2.5e-102 377.1 548 43.4
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 1.6e-101 374.4 585 41.0
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 2.7e-101 373.6 578 40.8
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 2.7e-101 373.6 578 41.0
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 8.7e-100 368.6 580 39.1
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 5.7e-99 365.9 575 38.8
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 7.4e-99 365.5 582 42.8
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 6.3e-98 362.5 583 40.8
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 1.8e-97 360.9 465 45.2
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 1.7e-95 354.4 591 40.1
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 1.9e-94 350.9 579 38.7
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 2.7e-93 347.1 384 51.3
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 5.1e-92 342.8 482 46.5
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.2e-90 337.4 359 54.6
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 1.1e-86 325.1 429 44.3
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 7.2e-86 322.4 549 38.6
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 3.0e-84 317.0 390 45.9
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 3.9e-84 316.6 443 42.4
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 8.2e-82 308.9 558 37.3
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 5.9e-80 302.8 574 38.2
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 2.9e-79 300.4 579 35.8
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 2.1e-77 294.3 449 40.8
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 3.9e-76 290.0 437 41.4
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 7.4e-75 285.8 262 57.6
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.5e-67 261.5 408 37.0
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 3.1e-65 253.8 539 32.3
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 4.1e-65 253.4 262 51.5
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 3.7e-58 230.3 446 34.3
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.5e-54 218.4 299 43.5
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.6e-53 214.9 249 45.8
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 6.1e-45 186.4 343 35.3
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.4e-44 185.3 257 47.5
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 5.2e-44 183.3 220 46.4
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 8.3e-42 176.0 423 31.2
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 4.1e-41 173.7 248 39.5
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 7.8e-40 169.5 171 65.5
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 1.0e-36 159.1 468 27.6
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 1.0e-36 159.1 540 23.7
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 3.1e-36 157.5 588 25.0
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 1.5e-35 155.2 153 54.9
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 2.2e-34 151.4 158 57.0
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.1e-33 147.1 150 54.7
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 5.4e-33 146.7 150 54.0
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 5.0e-31 140.2 162 45.1
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 5.0e-31 140.2 556 24.8
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.9e-30 138.3 202 44.1
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 1.4e-28 132.1 552 22.8
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 6.8e-28 129.8 146 46.6
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 4.1e-25 120.6 152 41.4
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 3.5e-24 117.5 120 49.2
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 6.0e-24 116.7 164 40.9
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 6.0e-24 116.7 123 52.8
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 8.6e-23 112.8 464 25.4
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 2.1e-21 108.2 163 41.1
Solyc01g104520.3 Solanum lycopersicum HOM05D003578 ORTHO05D004021 8.1e-21 106.3 128 49.2
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.1e-20 105.9 105 52.4
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.8e-20 105.1 112 50.9
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 5.2e-20 103.6 138 40.6
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.0e-19 101.7 108 47.2
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 4.1e-17 94.0 177 34.5
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.3e-15 89.0 100 48.0
Nn7g38100 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.1e-14 85.9 120 45.8
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 2.5e-14 84.7 135 35.6
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 7.3e-14 83.2 83 51.8
MCO01G050 Micromonas commoda HOM05D003578 ORTHO05D004021 1.6e-13 82.0 253 24.9
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 4.7e-13 80.5 128 34.4
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 8.1e-13 79.7 73 53.4
Pp3c11_11580 Physcomitrium patens HOM05D003578 ORTHO05D004021 1.8e-12 78.6 467 22.7
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 9.9e-11 72.8 63 60.3
GSVIVG01038756001 Vitis vinifera HOM05D003578 ORTHO05D004021 9.9e-11 72.8 83 47.0
arahy.Tifrunner.gnm1.ann1.ZN95YA Arachis hypogaea HOM05D003578 ORTHO05D004021 2.9e-10 71.2 75 49.3
Sopen01g047030 Solanum pennellii HOM05D003578 ORTHO05D004021 2.9e-10 71.2 58 60.3
Atru.chr6.1018 Acer truncatum HOM05D003578 ORTHO05D004021 2.7e-08 64.7 64 50.0
Aqoxy2G04053 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 7.8e-08 63.2 65 47.7
Aqoxy7G03366 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 7.8e-08 63.2 65 47.7
ATR0193G025 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.3e-07 62.4 110 30.0
ATR0686G029 Amborella trichopoda HOM05D003578 ORTHO05D004021 2.5e-06 58.2 110 28.2
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 3.3e-06 57.8 55 47.3
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 4.3e-06 57.4 77 35.1


User provided reference genes

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