Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009899g0030 Nicotiana tabacum HOM05D000049 ORTHO05D286318 2.7e-35 151.4 71 100.0
Nitab4.5_0001890g0020 Nicotiana tabacum HOM05D000049 ORTHO05D282551 8.3e-29 129.8 71 87.3
MD01G1199200 Malus domestica HOM05D000049 ORTHO05D005570 6.0e-11 70.5 39 82.1
DCAR_020241 Daucus carota HOM05D000049 ORTHO05D005570 1.0e-10 69.7 39 82.1
ECA248G0135 Erigeron canadensis HOM05D000049 ORTHO05D005570 1.0e-10 69.7 39 82.1
HanXRQChr01g0022471 Helianthus annuus HOM05D000049 ORTHO05D005570 1.0e-10 69.7 39 82.1
Duzib084G0796 Durio zibethinus HOM05D000049 ORTHO05D005570 1.3e-10 69.3 39 82.1
FvH4_7g29260 Fragaria vesca HOM05D000049 ORTHO05D005570 1.3e-10 69.3 39 79.5
FAN01G2061 Fragaria x ananassa HOM05D000049 ORTHO05D005570 1.3e-10 69.3 39 79.5
FAN03G1896 Fragaria x ananassa HOM05D000049 ORTHO05D005570 1.3e-10 69.3 39 79.5
FAN03G2174 Fragaria x ananassa HOM05D000049 ORTHO05D005570 1.3e-10 69.3 39 79.5
FAN06G0854 Fragaria x ananassa HOM05D000049 ORTHO05D005570 1.3e-10 69.3 39 79.5
FAN06G1435 Fragaria x ananassa HOM05D000049 ORTHO05D005570 1.3e-10 69.3 39 79.5
MD07G1267000 Malus domestica HOM05D000049 ORTHO05D005570 1.3e-10 69.3 39 79.5
Nitab4.5_0001700g0040 Nicotiana tabacum HOM05D000049 ORTHO05D005570 1.3e-10 69.3 39 82.1
Nitab4.5_0007728g0050 Nicotiana tabacum HOM05D000049 ORTHO05D005570 1.3e-10 69.3 39 82.1
CANSAT21G1283 Cannabis sativa HOM05D000049 ORTHO05D005570 1.7e-10 68.9 39 82.1
Ca_00643_v3 Cicer arietinum L. HOM05D000049 ORTHO05D005570 1.7e-10 68.9 39 76.9
Duzib205G1145 Durio zibethinus HOM05D000049 ORTHO05D005570 1.7e-10 68.9 39 82.1
Gohir.A09G040865 Gossypium hirsutum HOM05D000049 ORTHO05D005570 1.7e-10 68.9 39 82.1
Gohir.D09G041600 Gossypium hirsutum HOM05D000049 ORTHO05D005570 1.7e-10 68.9 39 82.1
Gorai.006G047900 Gossypium raimondii HOM05D000049 ORTHO05D005570 1.7e-10 68.9 39 82.1
Oeu022584.1 Olea europaea HOM05D000049 ORTHO05D005570 1.7e-10 68.9 39 79.5
Oeu062757.1 Olea europaea HOM05D000049 ORTHO05D005570 1.7e-10 68.9 39 79.5
Oeu062759.1 Olea europaea HOM05D000049 ORTHO05D005570 1.7e-10 68.9 39 79.5
Solyc10g074630.3 Solanum lycopersicum HOM05D000049 ORTHO05D005570 1.7e-10 68.9 39 79.5
Solyc10g074643.1 Solanum lycopersicum HOM05D000049 ORTHO05D005570 1.7e-10 68.9 39 79.5
Sopen10g027110 Solanum pennellii HOM05D000049 ORTHO05D005570 1.7e-10 68.9 39 79.5
PGSC0003DMG400016822 Solanum tuberosum HOM05D000049 ORTHO05D005570 1.7e-10 68.9 39 79.5
Thecc.03G174700 Theobroma cacao HOM05D000049 ORTHO05D005570 1.7e-10 68.9 39 82.1
EL10Ac9g21481 Beta vulgaris HOM05D000049 ORTHO05D005570 2.3e-10 68.6 39 79.5
Glyma.13G208600 Glycine max HOM05D000049 ORTHO05D005570 2.3e-10 68.6 39 79.5
Glyma.15G104200 Glycine max HOM05D000049 ORTHO05D005570 2.3e-10 68.6 39 79.5
Gohir.A12G258700 Gossypium hirsutum HOM05D000049 ORTHO05D005570 2.3e-10 68.6 39 79.5
Gohir.D12G259900 Gossypium hirsutum HOM05D000049 ORTHO05D005570 2.3e-10 68.6 39 79.5
Gorai.008G278400 Gossypium raimondii HOM05D000049 ORTHO05D005570 2.3e-10 68.6 39 79.5
Manes.14G027200 Manihot esculenta HOM05D000049 ORTHO05D005570 2.3e-10 68.6 39 79.5
PGR142G0066 Punica granatum HOM05D000049 ORTHO05D005570 2.3e-10 68.6 39 79.5
VMungo0540G2336 Vigna mungo HOM05D001407 ORTHO05D005570 2.3e-10 68.6 39 79.5
Actinidia32872 Actinidia chinensis HOM05D000049 ORTHO05D005570 3.0e-10 68.2 39 79.5
CSS0010521 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D005570 3.0e-10 68.2 39 79.5
CSS0023727 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D005570 3.0e-10 68.2 39 79.5
CSS0049376 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D005570 3.0e-10 68.2 39 79.5
CAN.G2457.1 Capsicum annuum HOM05D000049 ORTHO05D005570 3.0e-10 68.2 39 79.5
Dinv35201 Davidia involucrata HOM05D000049 ORTHO05D005570 3.0e-10 68.2 39 79.5
Eucgr.A02800 Eucalyptus grandis HOM05D000049 ORTHO05D005570 3.0e-10 68.2 39 76.9
FAN10G2293 Fragaria x ananassa HOM05D000049 ORTHO05D005570 3.0e-10 68.2 39 76.9
Lj1A995G34 Lonicera japonica HOM05D000049 ORTHO05D005570 3.0e-10 68.2 39 79.5
Lj6g0028136 Lotus japonicus HOM05D000049 ORTHO05D005570 3.0e-10 68.2 39 79.5
MSTRG.8450 Avicennia marina HOM05D000049 ORTHO05D005570 3.9e-10 67.8 39 79.5
Cfa008305 Carpinus fangiana HOM05D000049 ORTHO05D005570 3.9e-10 67.8 39 79.5
CiPaw.03G104900 Carya illinoinensis HOM05D000049 ORTHO05D005570 3.9e-10 67.8 39 79.5
AUR62010138 Chenopodium quinoa HOM05D000049 ORTHO05D005570 3.9e-10 67.8 39 76.9
AUR62013131 Chenopodium quinoa HOM05D000049 ORTHO05D005570 3.9e-10 67.8 39 76.9
Cc02_g03160 Coffea canephora HOM05D000049 ORTHO05D005570 3.9e-10 67.8 39 76.9
COL.COLO4_14289 Corchorus olitorius HOM05D000049 ORTHO05D005570 3.9e-10 67.8 39 79.5
Haze_13730 Corylus avellana HOM05D000049 ORTHO05D005570 3.9e-10 67.8 39 79.5
Migut.F01131 Erythranthe guttata HOM05D000049 ORTHO05D005570 3.9e-10 67.8 39 79.5
SalBow2G1945 Salvia bowleyana HOM05D000049 ORTHO05D005570 3.9e-10 67.8 39 79.5
Hund04728 Selenicereus undatus HOM05D000049 ORTHO05D005570 3.9e-10 67.8 39 76.9
GSVIVG01003916001 Vitis vinifera HOM05D000049 ORTHO05D005570 3.9e-10 67.8 39 76.9
Atru.chr1.480 Acer truncatum HOM05D000049 ORTHO05D005570 5.1e-10 67.4 39 76.9
Ciclev10005906m.g Citrus clementina HOM05D000049 ORTHO05D005570 5.1e-10 67.4 39 76.9
Hma1.2p1_0270F.1_g108190 Hydrangea macrophylla HOM05D000049 ORTHO05D005570 5.1e-10 67.4 39 76.9
QL09p014571 Quercus lobata HOM05D000049 ORTHO05D005570 5.1e-10 67.4 39 76.9
Prupe.2G292600 Prunus persica HOM05D000049 ORTHO05D005570 6.6e-10 67.0 39 76.9
RcHm_v2.0_Chr1g0377011 Rosa chinensis HOM05D000049 ORTHO05D005570 6.6e-10 67.0 39 76.9
arahy.Tifrunner.gnm1.ann1.1N90UZ Arachis hypogaea HOM05D000049 ORTHO05D005570 8.6e-10 66.6 39 74.4
arahy.Tifrunner.gnm1.ann1.D3E6GM Arachis hypogaea HOM05D000049 ORTHO05D005570 8.6e-10 66.6 39 74.4
CiPaw.04G065600 Carya illinoinensis HOM05D000049 ORTHO05D005570 8.6e-10 66.6 39 76.9
ClCG05G007950 Citrullus lanatus HOM05D000049 ORTHO05D005570 8.6e-10 66.6 39 76.9
CsaV3_3G016990 Cucumis sativus L. HOM05D000049 ORTHO05D005570 8.6e-10 66.6 39 76.9
Lsat_1_v5_gn_1_72181 Lactuca sativa HOM05D000049 ORTHO05D005570 8.6e-10 66.6 39 79.5
Potri.012G138500 Populus trichocarpa HOM05D000049 ORTHO05D005570 8.6e-10 66.6 39 76.9
Sabra12G0103900 Salix brachista HOM05D000049 ORTHO05D005570 8.6e-10 66.6 39 76.9
Sed0012328 Sechium edule HOM05D000049 ORTHO05D005570 8.6e-10 66.6 39 76.9
SGA_v2.0_scaffold10G05360 Striga asiatica HOM05D000049 ORTHO05D005570 8.6e-10 66.6 39 76.9
TWI14G0384 Tripterygium wilfordii HOM05D000049 ORTHO05D005570 8.6e-10 66.6 39 76.9
TWI39G0337 Tripterygium wilfordii HOM05D000049 ORTHO05D005570 8.6e-10 66.6 39 76.9
Oeu024237.2 Olea europaea HOM05D000049 ORTHO05D005570 1.1e-09 66.2 39 74.4
Dinv28457 Davidia involucrata HOM05D000049 ORTHO05D005570 1.5e-09 65.9 39 76.9
SHI03071 Sapria himalayana HOM05D000049 ORTHO05D005570 1.5e-09 65.9 39 76.9
THA.LOC104811987 Tarenaya hassleriana HOM05D000049 ORTHO05D005570 1.5e-09 65.9 47 66.0
Aa31LG3G8590 Aethionema arabicum HOM05D000049 ORTHO05D005570 1.9e-09 65.5 39 74.4
BcaB08g35574 Brassica carinata HOM05D000049 ORTHO05D005570 1.9e-09 65.5 39 74.4
BcaC04g20602 Brassica carinata HOM05D000049 ORTHO05D005570 1.9e-09 65.5 39 74.4
A10p09910 Brassica napus HOM05D000049 ORTHO05D005570 1.9e-09 65.5 39 74.4
C09p41620 Brassica napus HOM05D000049 ORTHO05D005570 1.9e-09 65.5 39 74.4
BolC9t57049H Brassica oleracea HOM05D000049 ORTHO05D005570 1.9e-09 65.5 39 74.4
BraA10t43071Z Brassica rapa HOM05D000049 ORTHO05D005570 1.9e-09 65.5 39 74.4
Lalb_Chr20g0118431 Lupinus albus HOM05D000049 ORTHO05D005570 1.9e-09 65.5 39 76.9
Peaxi162Scf00374g00076 Petunia axillaris HOM05D000049 ORTHO05D005570 1.9e-09 65.5 39 79.5
Rhsim03G0179200 Rhododendron simsii HOM05D000049 ORTHO05D005570 1.9e-09 65.5 39 79.5
Sp6g14460 Schrenkiella parvula HOM05D000049 ORTHO05D005570 1.9e-09 65.5 39 74.4
THA.LOC104800258 Tarenaya hassleriana HOM05D000049 ORTHO05D005570 1.9e-09 65.5 39 74.4
Thhalv10014702m.g Eutrema salsugineum HOM05D000049 ORTHO05D005570 2.5e-09 65.1 39 71.8
vmacro06698 Vaccinium macrocarpon HOM05D000049 ORTHO05D005570 2.5e-09 65.1 39 76.9
Hma1.2p1_0078F.1_g040570 Hydrangea macrophylla HOM05D000049 ORTHO05D005570 3.3e-09 64.7 37 75.7
Hma1.2p1_1567F.1_g291050 Hydrangea macrophylla HOM05D000049 ORTHO05D005570 3.3e-09 64.7 37 75.7
Lalb_Chr18g0056091 Lupinus albus HOM05D000049 ORTHO05D005570 3.3e-09 64.7 39 74.4
Manes.06G145900 Manihot esculenta HOM05D000049 ORTHO05D005570 3.3e-09 64.7 39 74.4
Psat1g183520 Pisum sativum HOM05D000049 ORTHO05D005570 3.3e-09 64.7 37 78.4
TPR.G30663 Trifolium pratense HOM05D000049 ORTHO05D005570 3.3e-09 64.7 39 74.4
AL8G26590 Arabidopsis lyrata HOM05D000049 ORTHO05D005570 4.3e-09 64.3 39 71.8
AT5G52210 Arabidopsis thaliana HOM05D000049 ORTHO05D005570 4.3e-09 64.3 39 71.8
MSTRG.8748 Avicennia marina HOM05D000049 ORTHO05D005570 4.3e-09 64.3 39 76.9
Carub.0008s1230 Capsella rubella HOM05D000049 ORTHO05D005570 4.3e-09 64.3 39 71.8
SalBow4G1777 Salvia bowleyana HOM05D000049 ORTHO05D005570 4.3e-09 64.3 39 76.9
SalBow4G2497 Salvia bowleyana HOM05D000049 ORTHO05D005570 4.3e-09 64.3 39 76.9
EL10Ac2g03198 Beta vulgaris HOM05D000049 ORTHO05D005570 5.6e-09 63.9 52 57.7
A03p15780 Brassica napus HOM05D000049 ORTHO05D005570 5.6e-09 63.9 39 71.8
C03p18450 Brassica napus HOM05D000049 ORTHO05D005570 5.6e-09 63.9 39 71.8
BolC3t14242H Brassica oleracea HOM05D000049 ORTHO05D005570 5.6e-09 63.9 39 71.8
BraA03t10868Z Brassica rapa HOM05D000049 ORTHO05D005570 5.6e-09 63.9 39 71.8
Medtr2g022200 Medicago truncatula HOM05D000049 ORTHO05D005570 5.6e-09 63.9 39 74.4
Sc19g0001590 Simmondsia chinensis HOM05D000049 ORTHO05D005570 5.6e-09 63.9 39 74.4
BcaB01g04193 Brassica carinata HOM05D000049 ORTHO05D005570 7.3e-09 63.5 39 69.2
Phvul.006G153700 Phaseolus vulgaris HOM05D000049 ORTHO05D005570 7.3e-09 63.5 39 74.4
Aqoxy7G00402 Aquilegia oxysepala HOM05D000049 ORTHO05D005570 9.5e-09 63.2 39 74.4
CDE02G3244 Ceratophyllum demersum HOM05D000049 ORTHO05D005570 9.5e-09 63.2 39 71.8
ATR0697G268 Amborella trichopoda HOM05D000049 ORTHO05D005570 1.2e-08 62.8 39 74.4
Sabra15G0151000 Salix brachista HOM05D000049 ORTHO05D005570 1.2e-08 62.8 39 69.2
TAR237G0003 Trochodendron aralioides HOM05D000102 ORTHO05D005570 1.2e-08 62.8 39 74.4
Nn6g34193 Nelumbo nucifera HOM05D000049 ORTHO05D005570 1.6e-08 62.4 39 71.8
Potri.015G140400 Populus trichocarpa HOM05D000049 ORTHO05D005570 1.6e-08 62.4 39 69.2
BcaC01g06173 Brassica carinata HOM05D000049 ORTHO05D005570 2.1e-08 62.0 39 69.2
CDE09G0233 Ceratophyllum demersum HOM05D000049 ORTHO05D005570 2.1e-08 62.0 39 74.4
PSO478G4542 Papaver somniferum HOM05D000049 ORTHO05D005570 2.1e-08 62.0 39 71.8
PSO782G1851 Papaver somniferum HOM05D000049 ORTHO05D005570 2.1e-08 62.0 39 71.8
Nn1g01408 Nelumbo nucifera HOM05D000049 ORTHO05D005570 2.8e-08 61.6 39 69.2
CARHR265130 Cardamine hirsuta HOM05D000049 ORTHO05D005570 3.6e-08 61.2 39 69.2
Os07g0620400 Oryza sativa ssp. japonica HOM05D000049 ORTHO05D005570 1.1e-07 59.7 39 66.7
GSVIVG01020486001 Vitis vinifera HOM05D000049 ORTHO05D005570 1.1e-07 59.7 39 69.2
Zm00001eb327740 Zea mays HOM05D000049 ORTHO05D005570 1.1e-07 59.7 39 66.7
SEGI_08673 Sequoiadendron giganteum HOM05D000049 ORTHO05D005570 1.4e-07 59.3 52 55.8
HPP92_011569 Vanilla planifolia HOM05D000049 ORTHO05D005570 1.4e-07 59.3 39 66.7
HPP92_011572 Vanilla planifolia HOM05D000049 ORTHO05D005570 1.4e-07 59.3 39 66.7
HPP92_011578 Vanilla planifolia HOM05D000049 ORTHO05D005570 2.4e-07 58.5 37 67.6
GSVIVG01020489001 Vitis vinifera HOM05D000049 ORTHO05D438526 2.4e-07 58.5 39 66.7
Lsat_1_v5_gn_1_10400 Lactuca sativa HOM05D000207 ORTHO05D016190 4.0e-07 57.8 39 69.2
Pp3c22_3800 Physcomitrium patens HOM05D000049 ORTHO05D005570 4.0e-07 57.8 39 64.1
Pp3c18_19550 Physcomitrium patens HOM05D000049 ORTHO05D005570 8.9e-07 56.6 39 61.5
SMO364G0832 Selaginella moellendorffii HOM05D000049 ORTHO05D005570 1.2e-06 56.2 55 45.5
Os03g0392300 Oryza sativa ssp. japonica HOM05D000049 ORTHO05D005570 1.5e-06 55.8 39 61.5
TAR629G1283 Trochodendron aralioides HOM05D000049 ORTHO05D005570 2.6e-06 55.1 39 66.7
Mapoly0024s0084 Marchantia polymorpha HOM05D000049 ORTHO05D005570 3.4e-06 54.7 39 59.0
Zm00001eb019130 Zea mays HOM05D000049 ORTHO05D005570 3.4e-06 54.7 39 61.5
CBR_g57836 Chara braunii HOM05D000049 ORTHO05D005570 9.9e-06 53.1 39 53.8
Lsat_1_v5_gn_6_32781 Lactuca sativa HOM05D000049 ORTHO05D005570 9.9e-06 53.1 37 64.9


User provided reference genes

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