Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009788g0030 Nicotiana tabacum HOM05D001890 ORTHO05D008163 8.1e-163 577.0 292 100.0
Nitab4.5_0005218g0010 Nicotiana tabacum HOM05D001890 ORTHO05D008163 6.9e-146 520.8 292 91.4
PGSC0003DMG400021337 Solanum tuberosum HOM05D001890 ORTHO05D008163 3.0e-101 372.5 272 75.4
Solyc01g006860.3 Solanum lycopersicum HOM05D001890 ORTHO05D008163 5.7e-100 368.2 270 74.4
Sopen01g002850 Solanum pennellii HOM05D001890 ORTHO05D008163 3.7e-99 365.5 272 74.3
CAN.G911.27 Capsicum annuum HOM05D001890 ORTHO05D008163 7.2e-87 324.7 280 66.4
Dinv11885 Davidia involucrata HOM05D001890 ORTHO05D008163 5.9e-73 278.5 244 62.3
Oeu045017.1 Olea europaea HOM05D001890 ORTHO05D008163 1.5e-71 273.9 289 55.0
TAR369G0922 Trochodendron aralioides HOM05D001890 ORTHO05D008163 2.5e-71 273.1 211 67.3
Cc06_g06850 Coffea canephora HOM05D001890 ORTHO05D008163 2.8e-70 269.6 224 63.4
Rhsim03G0062200 Rhododendron simsii HOM05D001890 ORTHO05D008163 3.6e-70 269.2 275 57.8
Gorai.002G233900 Gossypium raimondii HOM05D001890 ORTHO05D008163 1.4e-69 267.3 272 57.7
Thecc.05G108500 Theobroma cacao HOM05D001890 ORTHO05D008163 1.8e-69 266.9 214 65.4
GSVIVG01022555001 Vitis vinifera HOM05D001890 ORTHO05D008163 8.9e-69 264.6 272 56.2
Gohir.D01G190200 Gossypium hirsutum HOM05D001890 ORTHO05D008163 2.6e-68 263.1 272 57.4
Actinidia03972 Actinidia chinensis HOM05D001890 ORTHO05D008163 4.4e-68 262.3 273 55.3
Manes.08G036100 Manihot esculenta HOM05D001890 ORTHO05D008163 5.8e-68 261.9 218 60.6
Gohir.A01G200100 Gossypium hirsutum HOM05D001890 ORTHO05D008163 9.8e-68 261.2 269 57.2
Actinidia03864 Actinidia chinensis HOM05D001890 ORTHO05D008163 1.7e-67 260.4 216 63.4
Haze_20108 Corylus avellana HOM05D001890 ORTHO05D008163 1.7e-67 260.4 272 54.4
MELO3C009561.2 Cucumis melo HOM05D001890 ORTHO05D008163 2.9e-67 259.6 255 56.1
QL07p026864 Quercus lobata HOM05D001890 ORTHO05D008163 2.9e-67 259.6 272 55.1
Migut.J00743 Erythranthe guttata HOM05D001890 ORTHO05D008163 4.9e-67 258.8 217 62.7
FvH4_6g20780 Fragaria vesca HOM05D001890 ORTHO05D008163 4.9e-67 258.8 259 55.6
DCAR_013451 Daucus carota HOM05D001890 ORTHO05D008163 8.3e-67 258.1 224 59.4
MSTRG.19331 Avicennia marina HOM05D001890 ORTHO05D008163 1.1e-66 257.7 261 55.6
COL.COLO4_29517 Corchorus olitorius HOM05D001890 ORTHO05D008163 2.4e-66 256.5 248 58.1
Atru.chr8.1300 Acer truncatum HOM05D001890 ORTHO05D008163 4.1e-66 255.8 251 56.6
CsaV3_3G038180 Cucumis sativus L. HOM05D001890 ORTHO05D008163 7.0e-66 255.0 249 57.4
SGA_v2.0_scaffold18G08441 Striga asiatica HOM05D001890 ORTHO05D008163 7.0e-66 255.0 291 51.9
Ciclev10012448m.g Citrus clementina HOM05D001890 ORTHO05D008163 9.2e-66 254.6 212 63.7
FAN14G3769 Fragaria x ananassa HOM05D001890 ORTHO05D008163 1.2e-65 254.2 259 55.6
RcHm_v2.0_Chr3g0476781 Rosa chinensis HOM05D001890 ORTHO05D008163 2.0e-65 253.4 258 55.4
Eucgr.A02558 Eucalyptus grandis HOM05D001890 ORTHO05D008163 7.8e-65 251.5 218 61.5
Oeu020166.1 Olea europaea HOM05D001890 ORTHO05D008163 1.0e-64 251.1 243 58.0
FAN05G2088 Fragaria x ananassa HOM05D001890 ORTHO05D008163 2.3e-64 250.0 259 54.1
CANSAT64G1416 Cannabis sativa HOM05D001890 ORTHO05D008163 5.0e-64 248.8 278 54.7
MBI05_g37895_MAGBIO Magnolia biondii HOM05D001890 ORTHO05D008163 5.0e-64 248.8 205 62.9
FAN09G2968 Fragaria x ananassa HOM05D001890 ORTHO05D008163 6.6e-64 248.4 244 55.3
Hma1.2p1_2851F.1_g329460 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 6.6e-64 248.4 178 70.2
MD14G1043000 Malus domestica HOM05D001890 ORTHO05D008163 8.6e-64 248.1 259 52.5
EL10Ac5g11823 Beta vulgaris HOM05D001890 ORTHO05D008163 1.1e-63 247.7 242 56.2
Nn2g14391 Nelumbo nucifera HOM05D001890 ORTHO05D008163 1.1e-63 247.7 211 62.6
HanXRQChr02g0053101 Helianthus annuus HOM05D001890 ORTHO05D008163 2.5e-63 246.5 225 56.9
Lalb_Chr06g0173221 Lupinus albus HOM05D001890 ORTHO05D008163 2.5e-63 246.5 278 52.9
Sed0014416 Sechium edule HOM05D001890 ORTHO05D008163 3.3e-63 246.1 200 62.5
TWI74G0853 Tripterygium wilfordii HOM05D001890 ORTHO05D008163 3.3e-63 246.1 273 54.9
PSO170G4460 Papaver somniferum HOM05D001890 ORTHO05D008163 5.6e-63 245.4 203 62.1
Prupe.7G091100 Prunus persica HOM05D001890 ORTHO05D008163 7.3e-63 245.0 267 54.3
Aqoxy1G01947 Aquilegia oxysepala HOM05D001890 ORTHO05D008163 1.2e-62 244.2 270 53.0
Sabra06G0154600 Salix brachista HOM05D001890 ORTHO05D008163 1.2e-62 244.2 261 54.4
CiPaw.09G022900 Carya illinoinensis HOM05D001890 ORTHO05D008163 1.6e-62 243.8 224 60.7
Lsat_1_v5_gn_6_34681 Lactuca sativa HOM05D001890 ORTHO05D008163 1.6e-62 243.8 238 54.2
MD12G1044000 Malus domestica HOM05D001890 ORTHO05D008163 2.1e-62 243.4 273 53.1
Potri.006G200900 Populus trichocarpa HOM05D001890 ORTHO05D008163 2.8e-62 243.0 262 53.8
PSO407G0155 Papaver somniferum HOM05D001890 ORTHO05D008163 3.6e-62 242.7 203 62.6
Glyma.10G083800 Glycine max HOM05D001890 ORTHO05D008163 1.8e-61 240.4 260 52.7
TPR.G21244 Trifolium pratense HOM05D001890 ORTHO05D003442 3.1e-61 239.6 205 61.5
Ah.12g054380 Amaranthus hybridus HOM05D001890 ORTHO05D008163 6.8e-61 238.4 196 63.8
Lj5g0002159 Lotus japonicus HOM05D001890 ORTHO05D008163 6.8e-61 238.4 258 51.9
arahy.Tifrunner.gnm1.ann1.59XBIZ Arachis hypogaea HOM05D001890 ORTHO05D008163 1.2e-60 237.7 222 55.4
arahy.Tifrunner.gnm1.ann1.XW59SW Arachis hypogaea HOM05D001890 ORTHO05D008163 3.4e-60 236.1 232 54.7
SGA_v2.0_scaffold116G32259 Striga asiatica HOM05D001890 ORTHO05D008163 9.8e-60 234.6 320 45.9
Aa31LG5G17190 Aethionema arabicum HOM05D001890 ORTHO05D008163 1.7e-59 233.8 205 57.1
SHI39226 Sapria himalayana HOM05D001890 ORTHO05D008163 2.2e-59 233.4 190 62.6
CARHR207150 Cardamine hirsuta HOM05D001890 ORTHO05D008163 3.7e-59 232.6 223 56.1
THA.LOC104816627 Tarenaya hassleriana HOM05D001890 ORTHO05D008163 4.9e-59 232.3 213 58.7
HPP92_018252 Vanilla planifolia HOM05D001890 ORTHO05D008163 4.9e-59 232.3 283 48.1
Glyma.02G193000 Glycine max HOM05D001890 ORTHO05D008163 6.4e-59 231.9 262 51.1
Medtr1g055300 Medicago truncatula HOM05D001890 ORTHO05D008163 6.4e-59 231.9 196 61.7
vmacro07500 Vaccinium macrocarpon HOM05D001890 ORTHO05D008163 6.4e-59 231.9 290 50.7
ECA233G0010 Erigeron canadensis HOM05D001890 ORTHO05D008163 1.9e-58 230.3 253 50.6
VMungo0251G0199 Vigna mungo HOM05D001890 ORTHO05D008163 2.4e-58 229.9 201 58.2
unitig_578.g15805 Utricularia gibba HOM05D001890 ORTHO05D008163 4.1e-58 229.2 279 48.0
Phvul.007G266300 Phaseolus vulgaris HOM05D001890 ORTHO05D008163 2.7e-57 226.5 269 48.7
BraA03t09635Z Brassica rapa HOM05D001890 ORTHO05D008163 4.6e-57 225.7 265 48.7
AT5G06410 Arabidopsis thaliana HOM05D001890 ORTHO05D008163 6.0e-57 225.3 208 59.1
AL6G16500 Arabidopsis lyrata HOM05D001890 ORTHO05D008163 1.0e-56 224.6 260 50.0
BolC3t12860H Brassica oleracea HOM05D001890 ORTHO05D003442 6.6e-56 221.9 212 56.6
Thhalv10014422m.g Eutrema salsugineum HOM05D001890 ORTHO05D008163 6.6e-56 221.9 210 56.2
ClCG10G018120 Citrullus lanatus HOM05D001890 ORTHO05D008163 1.1e-55 221.1 214 57.5
A03p02720 Brassica napus HOM05D001890 ORTHO05D008163 1.5e-55 220.7 266 48.1
BcaB01g05992 Brassica carinata HOM05D001890 ORTHO05D008163 7.3e-55 218.4 211 56.4
C03p03150 Brassica napus HOM05D001890 ORTHO05D003442 2.1e-54 216.9 211 56.4
ATR0697G265 Amborella trichopoda HOM05D001890 ORTHO05D008163 2.8e-54 216.5 190 57.4
BolC9t59784H Brassica oleracea HOM05D001890 ORTHO05D008163 2.8e-54 216.5 210 55.2
BraA10t45037Z Brassica rapa HOM05D001890 ORTHO05D008163 1.1e-53 214.5 210 55.2
Zm00001eb161520 Zea mays HOM05D001890 ORTHO05D008163 1.1e-53 214.5 190 59.5
SEGI_25149 Sequoiadendron giganteum HOM05D001890 ORTHO05D008163 8.9e-53 211.5 192 55.7
FAN02G4586 Fragaria x ananassa HOM05D001890 ORTHO05D003442 1.5e-52 210.7 158 67.7
RcHm_v2.0_Chr3g0476751 Rosa chinensis HOM05D001890 ORTHO05D008163 1.7e-51 207.2 258 48.8
CSS0004156 Camellia sinensis var. sinensis HOM05D001890 ORTHO05D008163 4.1e-50 202.6 153 71.9
Dinv25069 Davidia involucrata HOM05D001890 ORTHO05D003442 7.8e-49 198.4 208 55.3
Psat6g128200 Pisum sativum HOM05D001890 ORTHO05D008163 7.8e-49 198.4 292 44.5
Os12g0456200 Oryza sativa ssp. japonica HOM05D001890 ORTHO05D008163 2.3e-48 196.8 166 61.4
Sc22g0003100 Simmondsia chinensis HOM05D001890 ORTHO05D008163 2.5e-47 193.4 152 67.1
PGR004G2365 Punica granatum HOM05D001890 ORTHO05D008163 3.3e-47 193.0 271 45.4
Lj3C241T9 Lonicera japonica HOM05D001890 ORTHO05D008163 1.6e-46 190.7 195 56.9
FAN05G2830 Fragaria x ananassa HOM05D001890 ORTHO05D008163 6.9e-45 185.3 143 67.8
AUR62036336 Chenopodium quinoa HOM05D001890 ORTHO05D008163 3.4e-44 183.0 153 62.1
Psat2g142840 Pisum sativum HOM05D001890 ORTHO05D008163 2.9e-43 179.9 183 54.6
Actinidia37766 Actinidia chinensis HOM05D001890 ORTHO05D008163 1.4e-42 177.6 162 58.6
Hund10835 Selenicereus undatus HOM05D001890 ORTHO05D008163 1.4e-42 177.6 176 56.2
CDE06G1636 Ceratophyllum demersum HOM05D001890 ORTHO05D000511 2.4e-42 176.8 166 57.2
AagrBONN_evm.TU.Sc2ySwM_117.1093 Anthoceros agrestis HOM05D001890 ORTHO05D008163 6.0e-41 172.2 203 43.3
Cpa.g.sc104.2 Carica papaya HOM05D001890 ORTHO05D008163 4.3e-39 166.0 112 71.4
Sp6g36440 Schrenkiella parvula HOM05D001890 ORTHO05D008163 4.3e-39 166.0 160 56.9
AUR62030695 Chenopodium quinoa HOM05D001890 ORTHO05D008163 2.9e-35 153.3 116 65.5
Peaxi162Scf00675g00610 Petunia axillaris HOM05D001890 ORTHO05D008163 2.9e-35 153.3 170 55.9
Pp3c16_9340 Physcomitrium patens HOM05D001890 ORTHO05D008163 2.9e-35 153.3 189 45.0
CBR_g70174 Chara braunii HOM05D001890 ORTHO05D008163 2.7e-33 146.7 196 43.9
Hma1.2p1_2851F.1_g329450 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 3.3e-31 139.8 153 52.9
Peaxi162Scf00675g00611 Petunia axillaris HOM05D001890 ORTHO05D008163 2.0e-28 130.6 132 59.1
Peaxi162Scf00767g00522 Petunia axillaris HOM05D001890 ORTHO05D008163 3.8e-27 126.3 247 38.9
Mapoly0055s0040 Marchantia polymorpha HOM05D001890 ORTHO05D008163 1.4e-26 124.4 198 37.4
Psat1g223560 Pisum sativum HOM05D001890 ORTHO05D008163 1.1e-23 114.8 149 45.0
Cre11.g467718 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 2.0e-20 104.0 179 38.0
Cre12.g507559 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 2.0e-20 104.0 179 38.0
Lj1g0015991 Lotus japonicus HOM05D001890 ORTHO05D008163 7.9e-17 92.0 81 60.5
MCO10G285 Micromonas commoda HOM05D001890 ORTHO05D008163 6.7e-16 89.0 237 29.5
SMO353G0218 Selaginella moellendorffii HOM05D001890 ORTHO05D008163 5.7e-15 85.9 123 39.0
CBR_g31284 Chara braunii HOM05D001890 ORTHO05D008163 2.6e-12 77.0 168 32.7
Lalb_Chr25g0282121 Lupinus albus HOM05D001890 ORTHO05D008163 7.6e-12 75.5 103 47.6
Lj3C241T8 Lonicera japonica HOM05D001890 ORTHO05D008163 7.9e-09 65.5 124 36.3


User provided reference genes

Program Settings