Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009773g0010 Nicotiana tabacum HOM05D005831 ORTHO05D007007 9.3e-193 676.8 363 100.0
Nitab4.5_0000446g0240 Nicotiana tabacum HOM05D005831 ORTHO05D007007 3.1e-180 635.2 360 92.5
Sopen04g034540 Solanum pennellii HOM05D005831 ORTHO05D007007 6.5e-170 600.9 364 86.8
PGSC0003DMG400003758 Solanum tuberosum HOM05D005831 ORTHO05D007007 1.1e-169 600.1 364 86.5
Solyc04g080930.4 Solanum lycopersicum HOM05D005831 ORTHO05D007007 1.9e-169 599.4 364 86.5
CAN.G6.15 Capsicum annuum HOM05D005831 ORTHO05D007007 8.2e-165 583.9 341 88.6
Peaxi162Scf00101g01522 Petunia axillaris HOM05D005831 ORTHO05D007007 2.6e-163 578.9 363 84.3
MSTRG.25981 Avicennia marina HOM05D005831 ORTHO05D007007 2.3e-138 496.1 364 72.3
Actinidia25695 Actinidia chinensis HOM05D005831 ORTHO05D007007 2.8e-136 489.2 363 70.2
GSVIVG01035453001 Vitis vinifera HOM05D005831 ORTHO05D007007 3.6e-136 488.8 361 70.4
Cc08_g01270 Coffea canephora HOM05D005831 ORTHO05D007007 8.9e-135 484.2 371 70.9
Thecc.09G062000 Theobroma cacao HOM05D005831 ORTHO05D007007 2.0e-134 483.0 355 71.3
Hma1.2p1_0231F.1_g097400 Hydrangea macrophylla HOM05D005831 ORTHO05D007007 3.4e-134 482.3 379 68.6
FvH4_2g31140 Fragaria vesca HOM05D005831 ORTHO05D007007 9.8e-134 480.7 365 69.0
FAN24G1737 Fragaria x ananassa HOM05D005831 ORTHO05D007007 9.8e-134 480.7 365 69.0
Gorai.001G020700 Gossypium raimondii HOM05D005831 ORTHO05D007007 1.7e-133 479.9 334 73.7
RcHm_v2.0_Chr6g0311631 Rosa chinensis HOM05D005831 ORTHO05D007007 3.7e-133 478.8 362 69.3
MBI19_g11845_MAGBIO Magnolia biondii HOM05D005831 ORTHO05D007007 8.3e-133 477.6 367 68.7
Prupe.1G405700 Prunus persica HOM05D005831 ORTHO05D007007 8.3e-133 477.6 337 73.3
MD15G1051800 Malus domestica HOM05D005831 ORTHO05D007007 2.4e-132 476.1 365 69.0
MD08G1070400 Malus domestica HOM05D005831 ORTHO05D007007 4.1e-132 475.3 367 69.2
SalBow4G2055 Salvia bowleyana HOM05D005831 ORTHO05D001900 4.1e-132 475.3 365 67.7
CiPaw.15G092600 Carya illinoinensis HOM05D005831 ORTHO05D007007 2.0e-131 473.0 367 68.9
ECA234G1597 Erigeron canadensis HOM05D005831 ORTHO05D007007 2.0e-131 473.0 360 69.2
Migut.A00086 Erythranthe guttata HOM05D005831 ORTHO05D007007 2.0e-131 473.0 363 69.4
Potri.006G222000 Populus trichocarpa HOM05D005831 ORTHO05D007007 2.7e-131 472.6 371 66.8
PGR004G2090 Punica granatum HOM05D005831 ORTHO05D007007 7.8e-131 471.1 347 69.7
Nn8g38706 Nelumbo nucifera HOM05D005831 ORTHO05D007007 1.3e-130 470.3 354 69.2
CsaV3_4G036010 Cucumis sativus L. HOM05D005831 ORTHO05D007007 2.3e-130 469.5 365 69.3
vmacro07801 Vaccinium macrocarpon HOM05D005831 ORTHO05D007007 3.0e-130 469.2 337 70.6
Gohir.D07G020000 Gossypium hirsutum HOM05D005831 ORTHO05D007007 5.0e-130 468.4 344 70.9
Cfa018014 Carpinus fangiana HOM05D005831 ORTHO05D007007 1.1e-129 467.2 356 67.4
Eucgr.C03149 Eucalyptus grandis HOM05D005831 ORTHO05D007007 1.5e-129 466.8 363 66.7
HanXRQChr12g0359011 Helianthus annuus HOM05D005831 ORTHO05D007007 1.9e-129 466.5 355 69.0
CANSAT25G0005 Cannabis sativa HOM05D005831 ORTHO05D007007 2.5e-129 466.1 357 68.9
Oeu027284.3 Olea europaea HOM05D005831 ORTHO05D007007 5.6e-129 464.9 412 61.4
QL04p096581 Quercus lobata HOM05D005831 ORTHO05D007007 5.6e-129 464.9 365 68.2
Manes.03G052700 Manihot esculenta HOM05D005831 ORTHO05D007007 9.5e-129 464.2 367 66.2
Cpa.g.sc126.34 Carica papaya HOM05D005831 ORTHO05D007007 1.6e-128 463.4 347 70.0
Ciclev10025877m.g Citrus clementina HOM05D005831 ORTHO05D007007 2.8e-128 462.6 340 70.9
ClCG05G015690 Citrullus lanatus HOM05D005831 ORTHO05D007007 6.8e-127 458.0 365 67.7
Sed0012871 Sechium edule HOM05D005831 ORTHO05D007007 6.8e-127 458.0 364 67.3
COL.COLO4_21126 Corchorus olitorius HOM05D005831 ORTHO05D007007 8.9e-127 457.6 351 68.1
CSS0021293 Camellia sinensis var. sinensis HOM05D005831 ORTHO05D007007 1.2e-126 457.2 356 67.4
Glyma.14G099100 Glycine max HOM05D005831 ORTHO05D007007 1.2e-126 457.2 363 65.6
Lsat_1_v5_gn_5_79500 Lactuca sativa HOM05D005831 ORTHO05D007007 1.2e-126 457.2 375 66.7
Sp4g07000 Schrenkiella parvula HOM05D005831 ORTHO05D007007 2.0e-126 456.4 343 68.5
Carub.0004s0626 Capsella rubella HOM05D005831 ORTHO05D007007 4.4e-126 455.3 343 67.1
Duzib150G1275 Durio zibethinus HOM05D005831 ORTHO05D007007 4.4e-126 455.3 355 66.5
VMungo0647G0599 Vigna mungo HOM05D005831 ORTHO05D007007 4.4e-126 455.3 363 65.0
FAN15G1366 Fragaria x ananassa HOM05D005831 ORTHO05D007007 5.8e-126 454.9 330 71.2
Glyma.17G225600 Glycine max HOM05D005831 ORTHO05D007007 2.2e-125 453.0 363 65.3
Aqoxy3G01546 Aquilegia oxysepala HOM05D005831 ORTHO05D007007 2.9e-125 452.6 344 67.2
unitig_748.g8240 Utricularia gibba HOM05D005831 ORTHO05D007007 1.1e-124 450.7 365 64.9
Lj5g0001901 Lotus japonicus HOM05D005831 ORTHO05D007007 1.9e-124 449.9 349 65.0
Phvul.001G039000 Phaseolus vulgaris HOM05D005831 ORTHO05D007007 2.4e-124 449.5 363 64.2
AL4G18970 Arabidopsis lyrata HOM05D005831 ORTHO05D007007 4.1e-124 448.7 356 65.2
Thhalv10002014m.g Eutrema salsugineum HOM05D005831 ORTHO05D007007 4.1e-124 448.7 348 66.7
Aa31LG5G18500 Aethionema arabicum HOM05D005831 ORTHO05D007007 9.2e-124 447.6 345 65.8
BcaB08g35248 Brassica carinata HOM05D005831 ORTHO05D007007 9.2e-124 447.6 357 66.9
PSO210G0521 Papaver somniferum HOM05D005831 ORTHO05D007007 1.2e-123 447.2 358 65.9
A09p54720 Brassica napus HOM05D005831 ORTHO05D007007 1.6e-123 446.8 357 65.8
Medtr1g015390 Medicago truncatula HOM05D005831 ORTHO05D007007 2.1e-123 446.4 355 66.2
PSO210G7793 Papaver somniferum HOM05D005831 ORTHO05D007007 2.7e-123 446.0 358 65.9
BcaC07g40824 Brassica carinata HOM05D005831 ORTHO05D007007 3.5e-123 445.7 356 65.2
TWI15G0825 Tripterygium wilfordii HOM05D005831 ORTHO05D007007 8.6e-122 441.0 355 66.8
A09p55230 Brassica napus HOM05D005831 ORTHO05D007007 1.1e-121 440.7 359 65.2
BraA09t40881Z Brassica rapa HOM05D005831 ORTHO05D007007 1.9e-121 439.9 358 65.4
Haze_18115 Corylus avellana HOM05D005831 ORTHO05D007007 1.9e-121 439.9 356 65.2
C08p38160 Brassica napus HOM05D005831 ORTHO05D007007 1.2e-120 437.2 360 65.0
BolC8t51391H Brassica oleracea HOM05D005831 ORTHO05D007007 1.2e-120 437.2 360 65.0
Lalb_Chr09g0334801 Lupinus albus HOM05D005831 ORTHO05D007007 1.2e-120 437.2 349 64.5
EL10Ac2g03793 Beta vulgaris HOM05D005831 ORTHO05D007007 1.2e-118 430.6 335 65.1
AUR62020581 Chenopodium quinoa HOM05D005831 ORTHO05D007007 3.4e-118 429.1 341 65.7
DCAR_003715 Daucus carota HOM05D005831 ORTHO05D007007 1.3e-117 427.2 334 69.2
TAR383G0824 Trochodendron aralioides HOM05D005831 ORTHO05D007007 7.8e-115 417.9 281 74.7
AT2G26350 Arabidopsis thaliana HOM05D005831 ORTHO05D007007 1.9e-113 413.3 313 68.1
Os07g0608800 Oryza sativa ssp. japonica HOM05D005831 ORTHO05D007007 5.6e-113 411.8 335 63.0
Dinv41837 Davidia involucrata HOM05D005831 ORTHO05D007007 4.0e-111 405.6 300 70.7
ATR0598G074 Amborella trichopoda HOM05D005831 ORTHO05D007007 5.2e-111 405.2 347 62.8
Lj2A627G34 Lonicera japonica HOM05D005831 ORTHO05D007007 1.3e-109 400.6 369 62.1
BraA09t40930Z Brassica rapa HOM05D005831 ORTHO05D007007 6.4e-109 398.3 316 65.8
TWI38G0260 Tripterygium wilfordii HOM05D005831 ORTHO05D007007 1.4e-108 397.1 348 62.4
THA.LOC104806019 Tarenaya hassleriana HOM05D005831 ORTHO05D007007 1.9e-108 396.7 356 61.2
Rhsim03G0040100 Rhododendron simsii HOM05D005831 ORTHO05D007007 9.2e-108 394.4 336 63.1
AUR62009089 Chenopodium quinoa HOM05D005831 ORTHO05D007007 1.6e-107 393.7 344 61.3
Sc09g0010090 Simmondsia chinensis HOM05D005831 ORTHO05D007007 2.3e-106 389.8 327 65.7
Sabra06G0171700 Salix brachista HOM05D005831 ORTHO05D007007 4.3e-105 385.6 385 57.7
Gohir.A07G020300 Gossypium hirsutum HOM05D005831 ORTHO05D007007 5.2e-103 378.6 280 69.6
arahy.Tifrunner.gnm1.ann1.2ULK6I Arachis hypogaea HOM05D005831 ORTHO05D007007 6.9e-103 378.3 360 59.2
CDE06G1722 Ceratophyllum demersum HOM05D005831 ORTHO05D007007 4.6e-99 365.5 296 64.5
Sed0000493 Sechium edule HOM05D005831 ORTHO05D007007 4.5e-94 349.0 282 64.9
Psat6g022600 Pisum sativum HOM05D005831 ORTHO05D007007 2.4e-92 343.2 281 62.3
Migut.A00085 Erythranthe guttata HOM05D005831 ORTHO05D007007 4.3e-89 332.4 275 65.1
Aqoxy2G00096 Aquilegia oxysepala HOM05D005831 ORTHO05D007007 2.1e-88 330.1 348 54.6
Hma1.2p1_0231F.1_g097410 Hydrangea macrophylla HOM05D005831 ORTHO05D007007 2.8e-88 329.7 262 66.4
SGA_v2.0_scaffold64G21865 Striga asiatica HOM05D005831 ORTHO05D007007 1.1e-87 327.8 365 52.6
Ca_13107_v3 Cicer arietinum L. HOM05D005831 ORTHO05D007007 4.5e-86 322.4 345 52.5
FAN27G2028 Fragaria x ananassa HOM05D005831 ORTHO05D007007 4.9e-85 318.9 360 51.4
FAN20G1335 Fragaria x ananassa HOM05D001583 ORTHO05D007007 6.4e-85 318.5 391 48.6
Mapoly0029s0064 Marchantia polymorpha HOM05D005831 ORTHO05D007007 1.6e-83 313.9 345 47.8
TPR.G10653 Trifolium pratense HOM05D005831 ORTHO05D007007 3.9e-82 309.3 249 63.1
Zm00001eb108960 Zea mays HOM05D005831 ORTHO05D007007 1.1e-81 307.8 285 55.4
Aqoxy3G01853 Aquilegia oxysepala HOM05D005831 ORTHO05D007007 7.4e-81 305.1 345 51.0
QL04p096516 Quercus lobata HOM05D000005 ORTHO05D000012 7.4e-81 305.1 258 63.2
Pp3c13_19650 Physcomitrium patens HOM05D005831 ORTHO05D007007 1.3e-77 294.3 357 46.2
MELO3C016909.2 Cucumis melo HOM05D005831 ORTHO05D007007 3.9e-66 256.1 211 65.4
Atru.chr7.1858 Acer truncatum HOM05D005831 ORTHO05D007007 6.3e-64 248.8 206 63.6
TPR.G38878 Trifolium pratense HOM05D005831 ORTHO05D007007 6.9e-63 245.4 226 57.5
HPP92_027843 Vanilla planifolia HOM05D005831 ORTHO05D007007 4.4e-57 226.1 201 57.7
arahy.Tifrunner.gnm1.ann1.VR587A Arachis hypogaea HOM05D005831 ORTHO05D007007 2.4e-55 220.3 370 41.9
arahy.Tifrunner.gnm1.ann1.12X2WP Arachis hypogaea HOM05D005831 ORTHO05D007007 2.0e-54 217.2 326 42.3
Actinidia27570 Actinidia chinensis HOM05D005831 ORTHO05D007007 2.6e-54 216.9 251 50.6
SHI18844 Sapria himalayana HOM05D005831 ORTHO05D007007 2.9e-45 186.8 219 49.3
TPR.G40658 Trifolium pratense HOM05D005831 ORTHO05D007007 5.2e-42 176.0 143 62.2
AagrBONN_evm.TU.Sc2ySwM_117.3066 Anthoceros agrestis HOM05D005831 ORTHO05D007007 5.3e-39 166.0 170 52.4
CBR_g34477 Chara braunii HOM05D005831 ORTHO05D007007 2.8e-32 143.7 370 32.7
CARHR118440 Cardamine hirsuta HOM05D005831 ORTHO05D007007 3.7e-32 143.3 105 73.3
PRCOL_00001676 Prasinoderma coloniale HOM05D005831 ORTHO05D007007 1.1e-31 141.7 326 33.4
Aqoxy5G02406 Aquilegia oxysepala HOM05D005831 ORTHO05D007007 1.8e-31 141.0 244 39.3
SEGI_09079 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 2.8e-27 127.1 145 46.2
HPP92_027844 Vanilla planifolia HOM05D005831 ORTHO05D007007 1.0e-26 125.2 107 64.5
MCO12G124 Micromonas commoda HOM05D005831 ORTHO05D007007 5.2e-26 122.9 371 31.0
Cfa027250 Carpinus fangiana HOM05D005831 ORTHO05D007007 6.3e-24 115.9 372 28.8
Cre07.g337050 Chlamydomonas reinhardtii HOM05D005831 ORTHO05D007007 6.6e-21 105.9 353 29.2
Psat0s2173g0120 Pisum sativum HOM05D012210 ORTHO05D007007 6.1e-19 99.4 71 71.8
RcHm_v2.0_Chr4g0387071 Rosa chinensis HOM05D005831 ORTHO05D007007 5.2e-18 96.3 108 50.9
SEGI_09068 Sequoiadendron giganteum HOM05D005831 ORTHO05D007007 6.4e-16 89.4 60 66.7
Solyc08g061880.2 Solanum lycopersicum HOM05D005831 ORTHO05D007007 3.2e-15 87.0 60 78.3
QL04p096475 Quercus lobata HOM05D000101 ORTHO05D000089 1.1e-12 78.6 62 69.4
QL06p019149 Quercus lobata HOM05D005831 ORTHO05D007007 1.9e-12 77.8 97 45.4
arahy.Tifrunner.gnm1.ann1.FV9EQX Arachis hypogaea HOM05D005831 ORTHO05D007007 2.5e-12 77.4 43 81.4
TWI38G1843 Tripterygium wilfordii HOM05D005831 ORTHO05D007007 1.1e-10 72.0 63 63.5
Actinidia28224 Actinidia chinensis HOM05D000290 ORTHO05D007007 8.3e-08 62.4 31 83.9
MELO3C032333.2 Cucumis melo HOM05D005831 ORTHO05D007007 1.9e-07 61.2 124 36.3


User provided reference genes

Program Settings