Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009754g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 3.9e-210 734.6 377 100.0
Nitab4.5_0001095g0100 Nicotiana tabacum HOM05D006699 ORTHO05D008399 1.8e-162 576.2 386 81.9
PGSC0003DMG400020443 Solanum tuberosum HOM05D006699 ORTHO05D008399 4.0e-130 468.8 335 76.4
Solyc07g055050.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 3.7e-128 462.2 335 74.9
Sopen07g027160 Solanum pennellii HOM05D006699 ORTHO05D008399 3.7e-128 462.2 335 74.9
Peaxi162Scf00384g00423 Petunia axillaris HOM05D006699 ORTHO05D008399 9.3e-111 404.4 332 67.5
PGSC0003DMG400007857 Solanum tuberosum HOM05D006699 ORTHO05D008399 1.3e-109 400.6 335 65.4
Dinv15443 Davidia involucrata HOM05D006699 ORTHO05D008399 2.5e-108 396.4 338 65.1
Nitab4.5_0000537g0130 Nicotiana tabacum HOM05D006699 ORTHO05D008399 2.1e-107 393.3 338 65.1
CiPaw.04G132200 Carya illinoinensis HOM05D006699 ORTHO05D008399 2.4e-106 389.8 336 64.3
Peaxi162Scf00469g00217 Petunia axillaris HOM05D006699 ORTHO05D008399 6.9e-106 388.3 320 67.5
CANSAT64G2599 Cannabis sativa HOM05D006699 ORTHO05D008399 5.8e-105 385.2 340 63.8
Cfa023335 Carpinus fangiana HOM05D006699 ORTHO05D008399 9.9e-105 384.4 337 65.6
QL08p041677 Quercus lobata HOM05D006699 ORTHO05D008399 2.2e-104 383.3 337 64.7
CAN.G1049.6 Capsicum annuum HOM05D006699 ORTHO05D008399 3.8e-104 382.5 341 63.3
QL08p041638 Quercus lobata HOM05D006699 ORTHO05D008399 3.8e-104 382.5 337 64.7
CSS0012388 Camellia sinensis var. sinensis HOM05D006699 ORTHO05D008399 1.9e-103 380.2 333 63.1
Sopen12g006230 Solanum pennellii HOM05D006699 ORTHO05D008399 1.9e-103 380.2 291 68.7
MSTRG.15092 Avicennia marina HOM05D006699 ORTHO05D008399 9.3e-103 377.9 346 61.6
Solyc12g010870.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 4.6e-102 375.6 294 67.7
Haze_13371 Corylus avellana HOM05D006699 ORTHO05D008399 6.0e-102 375.2 337 64.1
GSVIVG01020707001 Vitis vinifera HOM05D006699 ORTHO05D008399 6.0e-102 375.2 338 62.7
Prupe.3G118500 Prunus persica HOM05D006699 ORTHO05D008399 2.3e-101 373.2 336 62.2
TAR626G0153 Trochodendron aralioides HOM05D006699 ORTHO05D008399 3.9e-101 372.5 371 61.2
Ciclev10015418m.g Citrus clementina HOM05D006699 ORTHO05D008399 5.1e-101 372.1 345 61.7
FvH4_6g27380 Fragaria vesca HOM05D006699 ORTHO05D008399 2.5e-100 369.8 337 62.0
Potri.014G142200 Populus trichocarpa HOM05D006699 ORTHO05D008399 3.3e-100 369.4 328 62.2
RcHm_v2.0_Chr2g0129651 Rosa chinensis HOM05D006699 ORTHO05D008399 3.3e-100 369.4 338 61.5
MD09G1238000 Malus domestica HOM05D006699 ORTHO05D008399 4.3e-100 369.0 339 61.4
Rhsim06G0131200 Rhododendron simsii HOM05D006699 ORTHO05D008399 1.6e-99 367.1 291 65.3
Eucgr.A01914 Eucalyptus grandis HOM05D006699 ORTHO05D008399 2.1e-99 366.7 336 61.0
HanXRQChr17g0557951 Helianthus annuus HOM05D006699 ORTHO05D008399 2.1e-99 366.7 337 60.5
MD17G1230900 Malus domestica HOM05D006699 ORTHO05D008399 4.8e-99 365.5 339 61.9
Thecc.01G150500 Theobroma cacao HOM05D006699 ORTHO05D008399 5.3e-98 362.1 349 59.9
TWI59G0496 Tripterygium wilfordii HOM05D006699 ORTHO05D008399 5.3e-98 362.1 335 60.3
PGR042G0843 Punica granatum HOM05D006699 ORTHO05D008399 3.4e-97 359.4 335 61.2
ECA233G1148 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.5e-97 359.0 330 61.2
Lj1A681T38 Lonicera japonica HOM05D006699 ORTHO05D008399 1.3e-96 357.5 336 58.3
Lsat_1_v5_gn_8_140640 Lactuca sativa HOM05D006699 ORTHO05D008399 1.7e-96 357.1 341 60.7
COL.COLO4_33580 Corchorus olitorius HOM05D006699 ORTHO05D008399 4.9e-96 355.5 348 58.0
FAN14G2123 Fragaria x ananassa HOM05D006699 ORTHO05D008399 1.4e-95 354.0 350 59.4
arahy.Tifrunner.gnm1.ann1.0K2T49 Arachis hypogaea HOM05D006699 ORTHO05D008399 2.5e-95 353.2 340 59.7
arahy.Tifrunner.gnm1.ann1.GAG0UF Arachis hypogaea HOM05D006699 ORTHO05D008399 3.2e-95 352.8 340 59.7
Ca_18111_v3 Cicer arietinum L. HOM05D006699 ORTHO05D008399 4.2e-95 352.4 341 58.9
Lalb_Chr01g0006001 Lupinus albus HOM05D006699 ORTHO05D008399 9.3e-95 351.3 344 59.6
CDE10G1046 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 1.2e-94 350.9 335 59.1
ClCG02G017820 Citrullus lanatus HOM05D006699 ORTHO05D008399 1.2e-94 350.9 343 60.6
CsaV3_6G018450 Cucumis sativus L. HOM05D006699 ORTHO05D008399 1.6e-94 350.5 340 60.3
unitig_0.g2026 Utricularia gibba HOM05D006699 ORTHO05D008399 2.1e-94 350.1 367 56.4
PSO229G0039 Papaver somniferum HOM05D006699 ORTHO05D008399 3.5e-94 349.4 349 56.7
Gohir.A12G086400 Gossypium hirsutum HOM05D006699 ORTHO05D008399 4.6e-94 349.0 339 59.3
SGA_v2.0_scaffold9G04816 Striga asiatica HOM05D006699 ORTHO05D008399 4.6e-94 349.0 337 59.3
VMungo1127G1340 Vigna mungo HOM05D006699 ORTHO05D008399 4.6e-94 349.0 326 60.7
Migut.M00261 Erythranthe guttata HOM05D006699 ORTHO05D008399 6.0e-94 348.6 333 59.8
Gorai.008G095400 Gossypium raimondii HOM05D006699 ORTHO05D008399 7.9e-94 348.2 338 59.5
Glyma.06G277600 Glycine max HOM05D006699 ORTHO05D008399 1.0e-93 347.8 317 61.8
Gohir.D12G085000 Gossypium hirsutum HOM05D006699 ORTHO05D008399 1.3e-93 347.4 335 59.7
PSO675G3944 Papaver somniferum HOM05D006699 ORTHO05D008399 1.3e-93 347.4 357 55.7
Psat7g165360 Pisum sativum HOM05D006699 ORTHO05D008399 3.0e-93 346.3 348 59.8
AUR62039018 Chenopodium quinoa HOM05D006699 ORTHO05D008399 3.9e-93 345.9 350 58.0
Thhalv10016897m.g Eutrema salsugineum HOM05D006699 ORTHO05D008399 8.7e-93 344.7 348 57.5
AL4G26070 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 1.1e-92 344.4 350 56.9
EL10Ac2g03349 Beta vulgaris HOM05D006699 ORTHO05D008399 1.1e-92 344.4 340 56.8
Medtr4g079850 Medicago truncatula HOM05D006699 ORTHO05D008399 1.5e-92 344.0 338 59.8
Sp4g13510 Schrenkiella parvula HOM05D006699 ORTHO05D008399 1.5e-92 344.0 348 57.5
AL4G26150 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 1.9e-92 343.6 350 56.9
Lj3g0015335 Lotus japonicus HOM05D006699 ORTHO05D008399 1.9e-92 343.6 345 58.0
Carub.0004s1225 Capsella rubella HOM05D006699 ORTHO05D008399 2.5e-92 343.2 350 57.4
FAN09G4348 Fragaria x ananassa HOM05D006699 ORTHO05D008399 2.5e-92 343.2 369 56.1
Phvul.011G130500 Phaseolus vulgaris HOM05D006699 ORTHO05D008399 2.5e-92 343.2 326 60.4
AT2G31040 Arabidopsis thaliana HOM05D006699 ORTHO05D008399 5.7e-92 342.0 350 56.6
C04p60180 Brassica napus HOM05D006699 ORTHO05D008399 5.7e-92 342.0 339 58.4
BolC4t27520H Brassica oleracea HOM05D006699 ORTHO05D008399 5.7e-92 342.0 339 58.4
Nitab4.5_0011277g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 7.4e-92 341.7 343 58.0
Sabra14G0107300 Salix brachista HOM05D006699 ORTHO05D008399 7.4e-92 341.7 321 60.7
BraA04t17899Z Brassica rapa HOM05D006699 ORTHO05D008399 4.8e-91 339.0 339 57.5
A04p23730 Brassica napus HOM05D006699 ORTHO05D008399 6.3e-91 338.6 339 57.2
CARHR124570 Cardamine hirsuta HOM05D006699 ORTHO05D008399 1.1e-90 337.8 350 56.0
Actinidia11153 Actinidia chinensis HOM05D006699 ORTHO05D008399 2.0e-89 333.6 322 59.6
Manes.02G091200 Manihot esculenta HOM05D006699 ORTHO05D008399 5.9e-89 332.0 339 57.8
ATR0602G053 Amborella trichopoda HOM05D006699 ORTHO05D008399 8.7e-85 318.2 304 57.9
DCAR_017060 Daucus carota HOM05D006699 ORTHO05D008399 1.9e-84 317.0 332 55.7
Hund07812 Selenicereus undatus HOM05D006699 ORTHO05D008399 2.4e-82 310.1 337 53.4
Aa31LG1G7380 Aethionema arabicum HOM05D006699 ORTHO05D008399 2.2e-80 303.5 323 56.7
Os01g0673800 Oryza sativa ssp. japonica HOM05D006699 ORTHO05D008399 3.8e-80 302.8 310 55.2
FAN02G3357 Fragaria x ananassa HOM05D006699 ORTHO05D008399 1.9e-79 300.4 306 57.5
Aqoxy1G02064 Aquilegia oxysepala HOM05D006699 ORTHO05D008399 2.7e-78 296.6 235 67.7
AUR62037610 Chenopodium quinoa HOM05D006426 ORTHO05D008399 2.3e-77 293.5 253 62.5
Sed0016519 Sechium edule HOM05D006699 ORTHO05D008399 1.4e-74 284.3 352 51.1
Sc06g0009080 Simmondsia chinensis HOM05D006699 ORTHO05D008399 2.4e-74 283.5 262 59.2
MELO3C013567.2 Cucumis melo HOM05D006699 ORTHO05D008399 2.6e-73 280.0 221 67.0
Oeu018752.1 Olea europaea HOM05D006699 ORTHO05D008399 2.9e-72 276.6 247 61.5
Manes.01G133200 Manihot esculenta HOM05D006699 ORTHO05D008399 6.5e-72 275.4 269 60.2
Sed0000889 Sechium edule HOM05D006699 ORTHO05D008399 2.1e-70 270.4 269 61.0
Cc05_g08340 Coffea canephora HOM05D006699 ORTHO05D008399 8.2e-67 258.5 255 59.2
Eucgr.K01127 Eucalyptus grandis HOM05D006699 ORTHO05D008399 5.3e-66 255.8 306 50.7
vmacro12376 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 1.2e-65 254.6 322 46.3
Lju1655A0G36 Lonicera japonica HOM05D006699 ORTHO05D008399 2.6e-65 253.4 400 42.0
Mapoly0038s0046 Marchantia polymorpha HOM05D006699 ORTHO05D008399 4.2e-63 246.1 304 47.7
Ah.01g003530 Amaranthus hybridus HOM05D006426 ORTHO05D007737 7.2e-63 245.4 174 69.5
TPR.G28306 Trifolium pratense HOM05D006699 ORTHO05D008399 3.0e-61 240.0 273 53.8
HPP92_009665 Vanilla planifolia HOM05D006699 ORTHO05D008399 1.2e-57 228.0 394 41.4
Pp3c8_13580 Physcomitrium patens HOM05D006699 ORTHO05D008399 6.5e-56 222.2 272 47.8
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 1.4e-53 214.5 267 45.3
SEGI_23271 Sequoiadendron giganteum HOM05D006699 ORTHO05D008399 1.2e-49 201.4 225 48.0
SMO014G0045 Selaginella moellendorffii HOM05D006699 ORTHO05D008399 3.8e-48 196.4 322 40.4
Atru.chr6.2796 Acer truncatum HOM05D006699 ORTHO05D008399 1.9e-47 194.1 187 59.9
Cpa.g.sc52.174 Carica papaya HOM05D006699 ORTHO05D008399 2.1e-38 164.1 193 53.4
Zm00001eb360100 Zea mays HOM05D006699 ORTHO05D008399 1.8e-34 151.0 244 43.9
Cc05_g08350 Coffea canephora HOM05D006699 ORTHO05D008399 1.1e-26 125.2 88 72.7
Atru.chr6.2795 Acer truncatum HOM05D006699 ORTHO05D008399 1.1e-21 108.6 57 87.7
CDE10G0215 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 5.8e-20 102.8 58 84.5
A03p17330 Brassica napus HOM05D006699 ORTHO05D008399 6.0e-17 92.8 85 58.8
BraA03t11005Z Brassica rapa HOM05D006699 ORTHO05D008399 7.8e-17 92.4 85 58.8
Lsat_1_v5_gn_2_38761 Lactuca sativa HOM05D006699 ORTHO05D008399 8.6e-16 89.0 77 58.4
Cre01.g049600 Chlamydomonas reinhardtii HOM05D006699 ORTHO05D008399 3.3e-15 87.0 248 27.8
MCO04G044 Micromonas commoda HOM05D006699 ORTHO05D008399 9.5e-15 85.5 213 32.4
PRCOL_00001453 Prasinoderma coloniale HOM05D006699 ORTHO05D008399 3.6e-14 83.6 217 33.6
vmacro12375 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 6.8e-13 79.3 86 55.8
Ah.01g003520 Amaranthus hybridus HOM05D006699 ORTHO05D008399 1.7e-11 74.7 98 51.0
TPR.G33085 Trifolium pratense HOM05D006699 ORTHO05D008399 8.6e-08 62.4 34 88.2
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 2.1e-06 57.8 181 30.9
C03p20440 Brassica napus HOM05D006699 ORTHO05D042655 4.7e-06 56.6 53 54.7
BolC3t14422H Brassica oleracea HOM05D006699 ORTHO05D042655 4.7e-06 56.6 53 54.7


User provided reference genes

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