Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 5.7e-101 370.9 188 100.0
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 2.5e-96 355.5 204 90.7
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 2.7e-95 352.1 188 93.1
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 4.8e-92 341.3 188 91.0
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.1e-91 340.1 188 90.4
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 4.1e-91 338.2 190 89.5
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 4.1e-91 338.2 188 89.9
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 9.1e-91 337.0 189 88.9
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 9.1e-91 337.0 188 88.3
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 5.9e-90 334.3 188 86.7
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 1.3e-89 333.2 194 86.1
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 2.2e-89 332.4 190 86.3
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 2.9e-89 332.0 190 86.3
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 2.9e-89 332.0 188 86.2
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 6.5e-89 330.9 193 85.5
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 1.1e-88 330.1 188 85.1
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 3.6e-87 325.1 191 84.3
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 2.3e-86 322.4 187 85.0
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 3.9e-86 321.6 194 83.5
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.1e-85 320.1 192 83.3
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 1.1e-85 320.1 193 81.3
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.5e-85 319.7 192 83.3
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 2.0e-85 319.3 189 83.1
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 3.3e-85 318.5 194 83.0
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 4.4e-85 318.2 194 82.5
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 4.4e-85 318.2 194 82.0
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 7.4e-85 317.4 189 81.0
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 7.4e-85 317.4 195 83.1
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 9.7e-85 317.0 189 81.0
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 1.7e-84 316.2 193 80.3
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 3.7e-84 315.1 191 80.1
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 1.1e-83 313.5 189 81.5
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 1.1e-83 313.5 193 80.3
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 1.4e-83 313.2 193 80.3
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.8e-83 312.8 198 78.3
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 2.4e-83 312.4 191 80.1
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 7.0e-83 310.8 189 81.0
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 9.1e-83 310.5 191 79.6
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 9.1e-83 310.5 193 79.8
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 9.1e-83 310.5 194 79.4
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 9.1e-83 310.5 197 77.7
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 1.2e-82 310.1 193 78.8
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 1.6e-82 309.7 194 77.8
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 1.6e-82 309.7 197 78.7
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 2.0e-82 309.3 189 80.4
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 2.6e-82 308.9 194 78.9
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 3.5e-82 308.5 190 78.9
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 3.5e-82 308.5 191 80.1
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 7.7e-82 307.4 194 78.4
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 7.7e-82 307.4 194 78.4
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 1.3e-81 306.6 193 77.7
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 1.3e-81 306.6 192 79.2
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 1.7e-81 306.2 187 81.3
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 2.2e-81 305.8 193 79.3
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 2.2e-81 305.8 194 78.4
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 2.9e-81 305.4 198 76.3
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 6.5e-81 304.3 199 76.9
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 8.5e-81 303.9 189 79.4
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 1.5e-80 303.1 192 76.0
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.5e-80 303.1 201 76.1
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 1.9e-80 302.8 194 76.3
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 2.5e-80 302.4 195 76.9
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 3.2e-80 302.0 199 75.9
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 5.5e-80 301.2 197 75.1
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 5.5e-80 301.2 212 72.2
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 7.2e-80 300.8 201 76.6
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 9.4e-80 300.4 200 76.0
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 9.4e-80 300.4 200 76.0
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 9.4e-80 300.4 192 76.6
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 9.4e-80 300.4 202 74.3
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 1.2e-79 300.1 200 75.5
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.2e-79 300.1 202 75.2
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.2e-79 300.1 194 76.8
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 1.2e-79 300.1 194 75.3
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 1.6e-79 299.7 196 76.0
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 2.7e-79 298.9 198 74.2
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.6e-79 298.5 206 73.8
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 6.1e-79 297.7 198 76.8
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 1.0e-78 297.0 194 76.3
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 1.8e-78 296.2 196 76.0
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 2.3e-78 295.8 199 73.4
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 5.2e-78 294.7 197 73.6
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 5.2e-78 294.7 197 73.6
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 5.2e-78 294.7 197 73.6
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 5.2e-78 294.7 237 64.1
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 5.2e-78 294.7 201 72.1
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 8.8e-78 293.9 197 73.1
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 1.5e-77 293.1 197 73.6
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 2.0e-77 292.7 197 73.1
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 2.0e-77 292.7 197 73.1
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.6e-77 292.4 200 73.0
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 3.3e-77 292.0 199 72.9
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 3.3e-77 292.0 203 70.9
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 4.4e-77 291.6 195 73.8
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 4.4e-77 291.6 195 73.8
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 5.7e-77 291.2 197 72.6
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 7.5e-77 290.8 174 83.9
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 7.5e-77 290.8 192 76.6
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.3e-76 290.0 201 71.6
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.3e-76 290.0 199 70.9
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 2.2e-76 289.3 203 70.9
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 2.2e-76 289.3 204 70.1
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 2.8e-76 288.9 194 74.2
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 3.7e-76 288.5 194 74.2
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 6.3e-76 287.7 194 74.7
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 1.1e-75 287.0 196 73.5
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 1.4e-75 286.6 196 71.9
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 5.3e-75 284.6 191 76.4
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 3.5e-74 282.0 186 76.3
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 4.5e-74 281.6 198 72.2
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 7.7e-74 280.8 196 72.4
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 1.7e-73 279.6 202 70.8
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 3.8e-73 278.5 171 78.9
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 3.8e-73 278.5 198 71.2
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 4.2e-72 275.0 200 68.0
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 5.5e-72 274.6 180 75.6
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 5.5e-72 274.6 200 68.0
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 5.5e-72 274.6 211 67.8
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 7.2e-72 274.2 210 69.5
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 2.7e-71 272.3 187 74.3
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 4.7e-71 271.6 196 69.4
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 8.0e-71 270.8 188 70.7
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 1.4e-70 270.0 199 68.8
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.8e-70 269.6 192 72.4
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 2.3e-70 269.2 223 63.7
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 2.3e-70 269.2 204 68.1
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 5.2e-70 268.1 175 76.0
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 1.2e-69 266.9 180 73.9
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 9.8e-69 263.8 196 66.3
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 4.8e-68 261.5 183 71.0
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 8.3e-68 260.8 201 67.2
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 2.4e-67 259.2 196 65.3
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.6e-66 256.5 179 68.7
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 4.5e-66 255.0 233 59.7
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 2.9e-65 252.3 213 63.8
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 1.1e-64 250.4 187 69.5
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 2.5e-64 249.2 182 66.5
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 2.1e-63 246.1 182 69.2
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 5.7e-61 238.0 175 68.0
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 3.7e-60 235.3 198 59.6
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 4.9e-60 235.0 201 62.2
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 1.1e-59 233.8 175 69.7
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 1.5e-56 223.4 188 62.2
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 6.4e-52 208.0 153 69.9
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 5.0e-49 198.4 122 82.8
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 4.4e-45 185.3 116 77.6
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 1.1e-43 180.6 171 57.3
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 8.6e-41 171.0 100 88.0
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 2.5e-40 169.5 102 84.3
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 9.5e-40 167.5 99 86.9
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 8.1e-39 164.5 97 83.5
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 9.9e-37 157.5 188 51.6
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.5e-29 133.7 75 78.7
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 1.7e-28 130.2 189 43.9
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 8.4e-28 127.9 72 80.6
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 9.2e-27 124.4 70 87.1
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.6e-26 123.6 99 65.7
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 4.6e-26 122.1 200 40.0
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 7.3e-24 114.8 192 37.0
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 5.2e-22 108.6 184 38.0
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 3.4e-21 105.9 72 77.8
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 7.6e-21 104.8 186 40.3
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 2.2e-20 103.2 99 58.6
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 1.4e-19 100.5 78 62.8
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 1.6e-18 97.1 186 38.7
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 2.5e-16 89.7 161 36.6
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 3.6e-15 85.9 52 71.2
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 4.8e-15 85.5 61 63.9
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.9e-12 76.3 51 74.5
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 4.9e-12 75.5 53 71.7
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 2.1e-10 70.1 55 60.0
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.9e-08 63.5 70 51.4


User provided reference genes

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