Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009600g0030 Nicotiana tabacum HOM05D003461 ORTHO05D004386 0.0e+00 2444.8 1246 100.0
Sopen08g021790 Solanum pennellii HOM05D003461 ORTHO05D004386 0.0e+00 2299.2 1243 94.2
CAN.G21.14 Capsicum annuum HOM05D003461 ORTHO05D004386 0.0e+00 2291.9 1243 94.0
Solyc08g067860.2 Solanum lycopersicum HOM05D003461 ORTHO05D004386 0.0e+00 2254.2 1255 92.4
Dinv30215 Davidia involucrata HOM05D003461 ORTHO05D004386 0.0e+00 2007.6 1243 81.6
Lj7C712G4 Lonicera japonica HOM05D003461 ORTHO05D004386 0.0e+00 2001.5 1243 81.3
Oeu019417.3 Olea europaea HOM05D003461 ORTHO05D004386 0.0e+00 1998.0 1243 80.3
Cc08_g08280 Coffea canephora HOM05D003461 ORTHO05D004386 0.0e+00 1988.8 1243 81.4
Dinv35880 Davidia involucrata HOM05D003461 ORTHO05D004386 0.0e+00 1962.2 1222 80.9
DCAR_006261 Daucus carota HOM05D003461 ORTHO05D004386 0.0e+00 1952.9 1243 79.7
Migut.A00272 Erythranthe guttata HOM05D003461 ORTHO05D004386 0.0e+00 1951.0 1243 78.8
SGA_v2.0_scaffold27G11498 Striga asiatica HOM05D003461 ORTHO05D004386 0.0e+00 1945.2 1248 78.9
Atru.chr7.2323 Acer truncatum HOM05D003461 ORTHO05D004386 0.0e+00 1943.3 1244 79.6
Manes.13G069700 Manihot esculenta HOM05D003461 ORTHO05D004386 0.0e+00 1914.0 1244 77.9
Thecc.09G143900 Theobroma cacao HOM05D003461 ORTHO05D004386 0.0e+00 1910.6 1246 78.3
TAR383G0906 Trochodendron aralioides HOM05D003461 ORTHO05D004386 0.0e+00 1907.5 1244 77.8
CSS0003133 Camellia sinensis var. sinensis HOM05D003461 ORTHO05D004386 0.0e+00 1907.1 1243 77.9
PGR044G2079 Punica granatum HOM05D003461 ORTHO05D004386 0.0e+00 1896.3 1245 76.7
COL.COLO4_24068 Corchorus olitorius HOM05D003461 ORTHO05D004386 0.0e+00 1895.2 1244 77.6
MD08G1135800 Malus domestica HOM05D003461 ORTHO05D004386 0.0e+00 1893.2 1244 77.8
Prupe.1G466400 Prunus persica HOM05D003461 ORTHO05D004386 0.0e+00 1887.1 1246 77.6
Haze_21625 Corylus avellana HOM05D003461 ORTHO05D004386 0.0e+00 1886.3 1244 77.7
Gorai.010G053900 Gossypium raimondii HOM05D003461 ORTHO05D004386 0.0e+00 1886.3 1245 77.7
RcHm_v2.0_Chr6g0312731 Rosa chinensis HOM05D003461 ORTHO05D004386 0.0e+00 1885.9 1245 77.3
Gohir.A06G048100 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 1884.4 1245 77.7
Ciclev10007226m.g Citrus clementina HOM05D003461 ORTHO05D004386 0.0e+00 1884.0 1245 77.5
Nn2g11834 Nelumbo nucifera HOM05D003461 ORTHO05D004386 0.0e+00 1877.1 1246 76.3
Cpa.g.sc91.7 Carica papaya HOM05D003461 ORTHO05D004386 0.0e+00 1875.5 1244 76.1
Gohir.D06G048050 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 1872.1 1237 77.6
Gorai.009G011800 Gossypium raimondii HOM05D003461 ORTHO05D004386 0.0e+00 1871.3 1244 76.6
Gohir.A05G010700 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 1869.0 1244 76.8
Gohir.D05G011400 Gossypium hirsutum HOM05D003461 ORTHO05D004386 0.0e+00 1868.2 1244 76.4
Sc09g0008870 Simmondsia chinensis HOM05D003461 ORTHO05D004386 0.0e+00 1866.3 1245 75.7
ECA240G1832 Erigeron canadensis HOM05D003461 ORTHO05D004386 0.0e+00 1857.4 1244 76.3
TWI34G1710 Tripterygium wilfordii HOM05D003461 ORTHO05D004386 0.0e+00 1857.4 1244 76.0
FvH4_2g30180 Fragaria vesca HOM05D003461 ORTHO05D004386 0.0e+00 1854.3 1246 76.5
FAN27G2808 Fragaria x ananassa HOM05D003461 ORTHO05D004386 0.0e+00 1854.3 1245 76.2
FAN15G0070 Fragaria x ananassa HOM05D003461 ORTHO05D004386 0.0e+00 1850.1 1257 75.7
unitig_747.g21880 Utricularia gibba HOM05D003461 ORTHO05D004386 0.0e+00 1850.1 1243 74.8
Rhsim07G0154200 Rhododendron simsii HOM05D003461 ORTHO05D004386 0.0e+00 1849.3 1355 71.1
Potri.018G034700 Populus trichocarpa HOM05D003461 ORTHO05D004386 0.0e+00 1848.9 1247 76.4
FAN20G1067 Fragaria x ananassa HOM05D003461 ORTHO05D004386 0.0e+00 1845.5 1245 75.8
SalBow4G0560 Salvia bowleyana HOM05D003461 ORTHO05D004386 0.0e+00 1843.2 1303 72.4
Duzib150G1527 Durio zibethinus HOM05D003461 ORTHO05D004386 0.0e+00 1840.9 1244 75.7
GSVIVG01035727001 Vitis vinifera HOM05D003461 ORTHO05D004386 0.0e+00 1836.2 1246 75.6
Lsat_1_v5_gn_5_45581 Lactuca sativa HOM05D003461 ORTHO05D004386 0.0e+00 1831.2 1266 75.7
Aqoxy7G01835 Aquilegia oxysepala HOM05D003461 ORTHO05D004386 0.0e+00 1828.1 1244 74.3
Sabra18G0035400 Salix brachista HOM05D003461 ORTHO05D004386 0.0e+00 1825.4 1270 74.2
Hund28667 Selenicereus undatus HOM05D003461 ORTHO05D004386 0.0e+00 1814.3 1243 73.8
Hund28681 Selenicereus undatus HOM05D003461 ORTHO05D004386 0.0e+00 1814.3 1243 73.8
Sp4g05280 Schrenkiella parvula HOM05D003461 ORTHO05D004386 0.0e+00 1813.5 1246 73.8
CANSAT01G0438 Cannabis sativa HOM05D003461 ORTHO05D004386 0.0e+00 1808.5 1245 74.4
Ah.12g063310 Amaranthus hybridus HOM05D003461 ORTHO05D004386 0.0e+00 1806.6 1243 73.7
BcaB06g28084 Brassica carinata HOM05D003461 ORTHO05D004386 0.0e+00 1805.8 1246 73.4
Thhalv10000008m.g Eutrema salsugineum HOM05D003461 ORTHO05D004386 0.0e+00 1805.0 1246 73.3
BcaC02g08333 Brassica carinata HOM05D003461 ORTHO05D004386 0.0e+00 1800.4 1245 73.6
AL4G17260 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 0.0e+00 1800.0 1246 73.4
Lj5g0000879 Lotus japonicus HOM05D003461 ORTHO05D004386 0.0e+00 1797.7 1248 73.6
A04p19870 Brassica napus HOM05D003461 ORTHO05D004386 0.0e+00 1797.3 1246 73.6
THA.LOC104819890 Tarenaya hassleriana HOM05D003461 ORTHO05D004386 0.0e+00 1796.9 1246 73.6
CARHR115590 Cardamine hirsuta HOM05D003461 ORTHO05D004386 0.0e+00 1795.8 1244 73.2
AUR62024833 Chenopodium quinoa HOM05D003461 ORTHO05D004386 0.0e+00 1795.0 1257 73.2
C04p55600 Brassica napus HOM05D003461 ORTHO05D004386 0.0e+00 1792.7 1247 73.4
Eucgr.C02859 Eucalyptus grandis HOM05D003461 ORTHO05D004386 0.0e+00 1790.8 1243 73.2
BraA04t17575Z Brassica rapa HOM05D003461 ORTHO05D004386 0.0e+00 1790.4 1255 73.1
HanXRQChr08g0221141 Helianthus annuus HOM05D003461 ORTHO05D004386 0.0e+00 1786.5 1250 74.3
Carub.0004s0545 Capsella rubella HOM05D003461 ORTHO05D004386 0.0e+00 1785.8 1244 73.2
PSO063G5065 Papaver somniferum HOM05D003461 ORTHO05D004386 0.0e+00 1785.0 1246 73.4
BolC4t27084H Brassica oleracea HOM05D003461 ORTHO05D004386 0.0e+00 1783.8 1259 72.7
PSO782G2185 Papaver somniferum HOM05D003461 ORTHO05D004386 0.0e+00 1783.8 1246 73.3
Glyma.17G204000 Glycine max HOM05D003461 ORTHO05D004386 0.0e+00 1781.9 1250 72.8
Phvul.001G055800 Phaseolus vulgaris HOM05D003461 ORTHO05D004386 0.0e+00 1779.2 1250 72.6
Lalb_Chr11g0063991 Lupinus albus HOM05D003461 ORTHO05D004386 0.0e+00 1777.7 1248 72.6
AT2G25660 Arabidopsis thaliana HOM05D003461 ORTHO05D004386 0.0e+00 1775.8 1246 72.5
Aa31sc76G80 Aethionema arabicum HOM05D003461 ORTHO05D004386 0.0e+00 1769.6 1247 72.0
Medtr1g010300 Medicago truncatula HOM05D003461 ORTHO05D004386 0.0e+00 1763.8 1249 72.1
EL10Ac2g02534 Beta vulgaris HOM05D003461 ORTHO05D004386 0.0e+00 1739.9 1243 71.8
arahy.Tifrunner.gnm1.ann1.3VS957 Arachis hypogaea HOM05D003461 ORTHO05D004386 0.0e+00 1738.4 1265 71.1
FAN24G1347 Fragaria x ananassa HOM05D003461 ORTHO05D004386 0.0e+00 1735.7 1348 68.6
Psat6g031040 Pisum sativum HOM05D003461 ORTHO05D004386 0.0e+00 1731.1 1247 71.4
TPR.G20094 Trifolium pratense HOM05D003461 ORTHO05D004386 0.0e+00 1728.8 1249 71.1
arahy.Tifrunner.gnm1.ann1.4R6GA4 Arachis hypogaea HOM05D003461 ORTHO05D004386 0.0e+00 1725.3 1251 71.1
AUR62032384 Chenopodium quinoa HOM05D003461 ORTHO05D004386 0.0e+00 1725.3 1246 71.3
Duzib168G0147 Durio zibethinus HOM05D003461 ORTHO05D004386 0.0e+00 1724.9 1244 71.9
Sed0017351 Sechium edule HOM05D003461 ORTHO05D004386 0.0e+00 1722.6 1245 70.8
ClCG05G017220 Citrullus lanatus HOM05D003461 ORTHO05D004386 0.0e+00 1697.6 1246 70.5
MELO3C003666.2 Cucumis melo HOM05D003461 ORTHO05D004386 0.0e+00 1689.9 1276 68.7
CsaV3_3G046700 Cucumis sativus L. HOM05D003461 ORTHO05D004386 0.0e+00 1686.4 1269 68.6
Actinidia15711 Actinidia chinensis HOM05D003461 ORTHO05D004386 0.0e+00 1681.4 1244 71.1
Peaxi162Scf00105g01316 Petunia axillaris HOM05D003461 ORTHO05D004386 0.0e+00 1645.2 875 94.4
HPP92_015152 Vanilla planifolia HOM05D003461 ORTHO05D004386 0.0e+00 1628.2 1246 66.9
Os01g0179400 Oryza sativa ssp. japonica HOM05D003461 ORTHO05D004386 0.0e+00 1622.1 1243 65.9
ATR0037G074 Amborella trichopoda HOM05D003461 ORTHO05D004386 0.0e+00 1610.5 1245 66.3
Zm00001eb122270 Zea mays HOM05D003461 ORTHO05D004386 0.0e+00 1606.7 1246 65.0
Glyma.06G073700 Glycine max HOM05D003461 ORTHO05D004386 0.0e+00 1578.1 1248 65.1
Glyma.04G072400 Glycine max HOM05D003461 ORTHO05D004386 0.0e+00 1556.6 1243 65.5
Lj1g0021913 Lotus japonicus HOM05D003461 ORTHO05D004386 0.0e+00 1542.7 1241 64.8
Nitab4.5_0000125g0130 Nicotiana tabacum HOM05D003461 ORTHO05D004386 0.0e+00 1542.3 991 82.5
VMungo0647G2469 Vigna mungo HOM05D003461 ORTHO05D004386 0.0e+00 1530.4 1110 70.1
VMungo1309G1485 Vigna mungo HOM05D003461 ORTHO05D004386 0.0e+00 1514.2 1247 63.8
Medtr3g108080 Medicago truncatula HOM05D003461 ORTHO05D004386 0.0e+00 1505.3 1247 63.0
vmacro05447 Vaccinium macrocarpon HOM05D003461 ORTHO05D004386 0.0e+00 1461.0 964 75.2
Psat5g027760 Pisum sativum HOM05D003461 ORTHO05D004386 0.0e+00 1460.7 1246 61.7
MD15G1115200 Malus domestica HOM05D003461 ORTHO05D004386 0.0e+00 1410.6 937 77.5
CiPaw.07G217600 Carya illinoinensis HOM05D003461 ORTHO05D004386 0.0e+00 1356.7 855 80.8
Ca_15696_v3 Cicer arietinum L. HOM05D003461 ORTHO05D004386 0.0e+00 1319.7 1197 59.0
Glyma.14G129400 Glycine max HOM05D003461 ORTHO05D004386 0.0e+00 1271.9 858 75.2
Mapoly0004s0170 Marchantia polymorpha HOM05D003461 ORTHO05D004386 0.0e+00 1245.7 1264 53.2
TPR.G34693 Trifolium pratense HOM05D003461 ORTHO05D004386 0.0e+00 1245.0 1050 62.6
Pp3c4_150 Physcomitrium patens HOM05D003461 ORTHO05D004386 0.0e+00 1173.7 1293 50.5
Phvul.009G098100 Phaseolus vulgaris HOM05D003461 ORTHO05D004386 0.0e+00 1142.5 960 62.0
SMO347G0057 Selaginella moellendorffii HOM05D003461 ORTHO05D004386 0.0e+00 1097.4 1247 48.9
CBR_g20101 Chara braunii HOM05D003461 ORTHO05D004386 4.9e-310 1068.1 1348 46.4
Actinidia14640 Actinidia chinensis HOM05D003461 ORTHO05D004386 1.6e-271 940.3 651 73.3
Actinidia14639 Actinidia chinensis HOM05D003461 ORTHO05D004386 1.4e-267 927.2 556 84.7
AagrBONN_evm.TU.Sc2ySwM_228.5632 Anthoceros agrestis HOM05D003461 ORTHO05D004386 3.0e-267 926.0 1060 48.2
Gohir.D06G048151 Gossypium hirsutum HOM05D003461 ORTHO05D004386 9.4e-261 904.4 638 72.6
SEGI_10354 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 3.6e-212 743.0 664 56.0
CDE07G1701 Ceratophyllum demersum HOM05D003461 ORTHO05D004386 1.4e-200 704.5 524 66.6
Peaxi162Scf00105g00133 Petunia axillaris HOM05D003461 ORTHO05D004386 4.5e-186 656.4 348 96.8
MCO11G459 Micromonas commoda HOM05D003461 ORTHO05D004386 5.9e-154 549.7 1094 32.2
AL4G17180 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 5.4e-147 526.6 393 72.3
CDE07G0137 Ceratophyllum demersum HOM05D003461 ORTHO05D004386 6.3e-132 476.5 273 88.6
Nitab4.5_0000125g0120 Nicotiana tabacum HOM05D003461 ORTHO05D004386 1.0e-126 459.1 230 99.6
AUR62011223 Chenopodium quinoa HOM05D003461 ORTHO05D004386 1.3e-124 452.2 389 60.7
Glyma.14G129500 Glycine max HOM05D003461 ORTHO05D004386 1.0e-121 442.6 351 64.7
MD15G1115000 Malus domestica HOM05D003461 ORTHO05D004386 1.2e-109 402.5 308 66.2
AL4G17190 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 4.3e-104 384.0 276 67.8
SEGI_09564 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 5.5e-83 313.9 362 47.8
SEGI_20580 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 3.2e-75 288.1 346 46.8
TPR.G27605 Trifolium pratense HOM05D003461 ORTHO05D004386 4.1e-62 244.6 232 55.2
VMungo0647G2587 Vigna mungo HOM05D003461 ORTHO05D004386 2.6e-61 241.9 140 89.3
Zm00001eb088480 Zea mays HOM05D003461 ORTHO05D004386 1.5e-53 216.1 117 93.2
HPP92_015178 Vanilla planifolia HOM05D003461 ORTHO05D004386 8.2e-47 193.7 349 35.2
Zm00001eb305240 Zea mays HOM05D003461 ORTHO05D004386 4.1e-46 191.4 107 91.6
HPP92_015177 Vanilla planifolia HOM05D003461 ORTHO05D004386 1.4e-41 176.4 186 56.5
Cre05.g243150 Chlamydomonas reinhardtii HOM05D003461 ORTHO05D004386 1.6e-37 162.9 678 23.2
Lsat_1_v5_gn_9_70541 Lactuca sativa HOM05D003461 ORTHO05D004386 3.2e-35 155.2 140 60.7
Aqoxy7G02104 Aquilegia oxysepala HOM05D003461 ORTHO05D005897 8.3e-31 140.6 109 67.0
Lsat_1_v5_gn_4_41661 Lactuca sativa HOM05D003461 ORTHO05D004386 2.4e-30 139.0 98 72.4
SEGI_12849 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 1.6e-29 136.3 96 74.0
Lsat_1_v5_gn_9_53460 Lactuca sativa HOM05D003461 ORTHO05D004386 1.0e-28 133.7 98 71.4
Gorai.013G159000 Gossypium raimondii HOM05D003461 ORTHO05D004386 3.8e-28 131.7 87 77.0
Gohir.D10G105800 Gossypium hirsutum HOM05D003461 ORTHO05D004386 8.5e-28 130.6 81 80.2
Gohir.D13G142100 Gossypium hirsutum HOM05D003461 ORTHO05D004386 1.9e-27 129.4 85 76.5
VMungo0647G0881 Vigna mungo HOM05D003461 ORTHO05D004386 9.4e-27 127.1 134 55.2
Gohir.D01G114000 Gossypium hirsutum HOM05D003461 ORTHO05D004386 2.3e-25 122.5 69 85.5
Lsat_1_v5_gn_0_34461 Lactuca sativa HOM05D003461 ORTHO05D004386 9.8e-24 117.1 75 72.0
VMungo1127G1644 Vigna mungo HOM05D003461 ORTHO05D004386 1.7e-20 106.3 64 75.0
RcHm_v2.0_Chr1g0381071 Rosa chinensis HOM05D003461 ORTHO05D004386 8.6e-20 104.0 57 87.7
RcHm_v2.0_Chr4g0412921 Rosa chinensis HOM05D003461 ORTHO05D004386 5.6e-19 101.3 57 86.0
Lsat_1_v5_gn_9_113480 Lactuca sativa HOM05D003461 ORTHO05D004386 1.1e-14 87.0 63 73.0
Potri.006G246401 Populus trichocarpa HOM05D003461 ORTHO05D004386 1.4e-14 86.7 54 83.3
Lsat_1_v5_gn_3_38460 Lactuca sativa HOM05D003461 ORTHO05D014082 1.2e-13 83.6 77 62.3
EL10Ac2g02535 Beta vulgaris HOM05D003461 ORTHO05D089362 1.9e-11 76.3 163 36.2
MBI14_g27819_MAGBIO Magnolia biondii HOM05D004897 ORTHO05D022889 2.2e-07 62.8 52 59.6
MBI19_g30558_MAGBIO Magnolia biondii HOM05D003461 ORTHO05D022889 8.3e-07 60.8 45 66.7


User provided reference genes

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