Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009593g0030 Nicotiana tabacum HOM05D008108 ORTHO05D011004 5.8e-115 417.5 208 100.0
Nitab4.5_0011972g0010 Nicotiana tabacum HOM05D008108 ORTHO05D000137 4.1e-92 341.7 208 85.1
Nitab4.5_0000553g0010 Nicotiana tabacum HOM05D008108 ORTHO05D000137 2.7e-88 328.9 215 82.3
Nitab4.5_0010898g0010 Nicotiana tabacum HOM05D008108 ORTHO05D000137 5.5e-81 304.7 188 84.6
Nitab4.5_0003201g0030 Nicotiana tabacum HOM05D008108 ORTHO05D000482 2.9e-74 282.3 209 74.6
Nitab4.5_0001109g0050 Nicotiana tabacum HOM05D008108 ORTHO05D011004 3.8e-74 282.0 209 68.4
Nitab4.5_0021924g0010 Nicotiana tabacum HOM05D008108 ORTHO05D000137 1.4e-68 263.5 221 68.3
Nitab4.5_0004407g0050 Nicotiana tabacum HOM05D008108 ORTHO05D000137 1.0e-63 247.3 209 64.6
Nitab4.5_0010466g0010 Nicotiana tabacum HOM05D008108 ORTHO05D011004 1.0e-63 247.3 163 79.1
Nitab4.5_0009434g0020 Nicotiana tabacum HOM05D008108 ORTHO05D011004 8.9e-63 244.2 172 76.2
Nitab4.5_0000500g0070 Nicotiana tabacum HOM05D008108 ORTHO05D000137 9.2e-60 234.2 209 61.2
Nitab4.5_0009415g0010 Nicotiana tabacum HOM05D008108 ORTHO05D000137 1.1e-57 227.3 211 61.6
Nitab4.5_0005190g0010 Nicotiana tabacum HOM05D008108 ORTHO05D000482 2.1e-56 223.0 180 67.2
Nitab4.5_0001914g0030 Nicotiana tabacum HOM05D008108 ORTHO05D011004 7.3e-49 198.0 185 60.0
Nitab4.5_0001024g0030 Nicotiana tabacum HOM05D008108 ORTHO05D011004 2.3e-47 193.0 209 53.1
Nitab4.5_0003250g0060 Nicotiana tabacum HOM05D000455 ORTHO05D000434 2.1e-43 179.9 127 73.2
Nitab4.5_0003824g0010 Nicotiana tabacum HOM05D008108 ORTHO05D011004 3.1e-39 166.0 109 81.7
Nitab4.5_0000013g0160 Nicotiana tabacum HOM05D008108 ORTHO05D011004 8.9e-39 164.5 193 46.6
Nitab4.5_0003250g0070 Nicotiana tabacum HOM05D000060 ORTHO05D000434 3.7e-37 159.1 202 48.5
Nitab4.5_0000409g0030 Nicotiana tabacum HOM05D008108 ORTHO05D011004 8.3e-37 157.9 114 71.1
Nitab4.5_0000114g0050 Nicotiana tabacum HOM05D008108 ORTHO05D000137 1.4e-36 157.1 134 62.7
Nitab4.5_0003401g0070 Nicotiana tabacum HOM05D008108 ORTHO05D000137 3.2e-36 156.0 110 73.6
Nitab4.5_0006538g0020 Nicotiana tabacum HOM05D008108 ORTHO05D011004 4.3e-33 145.6 166 52.4
Nitab4.5_0003261g0030 Nicotiana tabacum HOM05D008108 ORTHO05D000482 6.8e-31 138.3 121 66.1
Nitab4.5_0003525g0020 Nicotiana tabacum HOM05D008108 ORTHO05D011004 8.9e-31 137.9 190 47.4
Nitab4.5_0008937g0010 Nicotiana tabacum HOM05D002262 ORTHO05D000482 9.9e-30 134.4 91 78.0
Nitab4.5_0014106g0010 Nicotiana tabacum HOM05D008108 ORTHO05D011004 3.2e-28 129.4 78 83.3
Nitab4.5_0000077g0040 Nicotiana tabacum HOM05D008108 ORTHO05D011004 4.6e-27 125.6 173 41.0
Nitab4.5_0013206g0020 Nicotiana tabacum HOM05D008108 ORTHO05D011004 2.1e-24 116.7 76 81.6
Nitab4.5_0014450g0010 Nicotiana tabacum HOM05D008108 ORTHO05D000482 3.6e-24 115.9 110 61.8
Nitab4.5_0000001g0290 Nicotiana tabacum HOM05D008108 ORTHO05D011004 3.8e-21 105.9 127 47.2
Nitab4.5_0000701g0030 Nicotiana tabacum HOM05D008108 ORTHO05D011004 1.1e-20 104.4 79 68.4
Nitab4.5_0000330g0020 Nicotiana tabacum HOM05D008108 ORTHO05D011004 7.1e-20 101.7 197 32.5
Nitab4.5_0000727g0060 Nicotiana tabacum HOM05D008108 ORTHO05D000137 9.3e-20 101.3 70 74.3
Nitab4.5_0003134g0170 Nicotiana tabacum HOM05D008108 ORTHO05D011004 2.1e-19 100.1 205 35.1
Nitab4.5_0001724g0030 Nicotiana tabacum HOM05D008108 ORTHO05D000137 2.7e-19 99.8 179 34.6
Nitab4.5_0000022g0130 Nicotiana tabacum HOM05D002262 ORTHO05D000482 4.3e-17 92.4 112 46.4
Nitab4.5_0002000g0010 Nicotiana tabacum HOM05D008108 ORTHO05D011004 3.6e-16 89.4 125 43.2
CANSAT25G1234 Cannabis sativa HOM05D023333 ORTHO05D000137 1.8e-15 87.0 164 34.8
Nitab4.5_0000434g0030 Nicotiana tabacum HOM05D008108 ORTHO05D000137 3.1e-15 86.3 123 41.5
Nitab4.5_0010466g0020 Nicotiana tabacum HOM05D008108 ORTHO05D011004 3.1e-15 86.3 47 91.5
Nitab4.5_0007365g0010 Nicotiana tabacum HOM05D008108 ORTHO05D011004 9.0e-15 84.7 196 33.2
CANSAT80G2652 Cannabis sativa HOM05D023333 ORTHO05D000137 1.2e-14 84.3 166 34.3
Nitab4.5_0000384g0070 Nicotiana tabacum HOM05D008108 ORTHO05D011004 1.2e-14 84.3 85 51.8
Nitab4.5_0001730g0180 Nicotiana tabacum HOM05D008108 ORTHO05D011004 2.0e-14 83.6 114 45.6
Nitab4.5_0000104g0270 Nicotiana tabacum HOM05D008108 ORTHO05D011004 4.5e-14 82.4 188 33.0
Nitab4.5_0005355g0020 Nicotiana tabacum HOM05D000679 ORTHO05D000137 3.8e-13 79.3 167 31.7
Nitab4.5_0000409g0050 Nicotiana tabacum HOM05D008108 ORTHO05D011004 1.1e-12 77.8 69 58.0
Nitab4.5_0001889g0010 Nicotiana tabacum HOM05D002262 ORTHO05D000137 2.4e-12 76.6 209 27.8
Sopen05g031060 Solanum pennellii HOM05D009268 ORTHO05D011733 5.4e-12 75.5 174 32.8
Sopen06g017270 Solanum pennellii HOM05D009268 ORTHO05D011733 5.4e-12 75.5 174 32.8
Sopen09g021100 Solanum pennellii HOM05D009268 ORTHO05D011733 5.4e-12 75.5 174 32.8
Nitab4.5_0000253g0070 Nicotiana tabacum HOM05D008108 ORTHO05D011004 1.6e-11 73.9 90 45.6
SGA_v2.0_scaffold276G46661 Striga asiatica HOM05D000679 ORTHO05D000137 1.6e-11 73.9 170 27.6
Nitab4.5_0001425g0040 Nicotiana tabacum HOM05D002262 ORTHO05D000482 2.1e-11 73.6 126 36.5
Sopen01g020370 Solanum pennellii HOM05D009268 ORTHO05D011733 2.7e-11 73.2 174 32.2
Nitab4.5_0000067g0030 Nicotiana tabacum HOM05D008108 ORTHO05D011004 3.5e-11 72.8 41 90.2
Nitab4.5_0017701g0010 Nicotiana tabacum HOM05D008108 ORTHO05D011004 3.5e-11 72.8 48 68.8
SGA_v2.0_scaffold59G20643 Striga asiatica HOM05D000679 ORTHO05D000137 7.9e-11 71.6 170 27.1
Nitab4.5_0001563g0030 Nicotiana tabacum HOM05D008108 ORTHO05D011004 1.0e-10 71.2 36 88.9
DCAR_010080 Daucus carota HOM05D000679 ORTHO05D000137 3.0e-10 69.7 158 31.0
Solyc08g066625.1 Solanum lycopersicum HOM05D009268 ORTHO05D011733 3.0e-10 69.7 174 31.0
Nitab4.5_0007904g0010 Nicotiana tabacum HOM05D008636 ORTHO05D000137 3.9e-10 69.3 136 33.8
Nitab4.5_0000034g0070 Nicotiana tabacum HOM05D002262 ORTHO05D000137 8.7e-10 68.2 134 35.1
Nitab4.5_0002414g0070 Nicotiana tabacum HOM05D002262 ORTHO05D000137 8.7e-10 68.2 169 31.4
Solyc11g042805.1 Solanum lycopersicum HOM05D009268 ORTHO05D000137 8.7e-10 68.2 174 29.9
Sopen12g014500 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-09 67.8 125 37.6
CANSAT25G0378 Cannabis sativa HOM05D000679 ORTHO05D000137 1.5e-09 67.4 202 27.2
Nitab4.5_0002347g0070 Nicotiana tabacum HOM05D008108 ORTHO05D000137 2.5e-09 66.6 48 62.5
Sopen06g029680 Solanum pennellii HOM05D000679 ORTHO05D000137 2.5e-09 66.6 142 29.6
CANSAT21G0042 Cannabis sativa HOM05D009472 ORTHO05D000137 4.3e-09 65.9 148 35.1
CANSAT21G0269 Cannabis sativa HOM05D009472 ORTHO05D000137 4.3e-09 65.9 148 35.1
CANSAT54G2039 Cannabis sativa HOM05D009472 ORTHO05D000137 4.3e-09 65.9 148 35.1
Nitab4.5_0005377g0070 Nicotiana tabacum HOM05D008108 ORTHO05D011004 4.3e-09 65.9 73 47.9
Nitab4.5_0010618g0020 Nicotiana tabacum HOM05D000679 ORTHO05D000137 4.3e-09 65.9 175 29.7
CANSAT50G0005 Cannabis sativa HOM05D009472 ORTHO05D000137 5.6e-09 65.5 148 35.1
CANSAT80G2627 Cannabis sativa HOM05D009472 ORTHO05D000137 5.6e-09 65.5 216 30.6
Nitab4.5_0013951g0010 Nicotiana tabacum HOM05D000679 ORTHO05D000137 5.6e-09 65.5 217 26.3
CANSAT25G3227 Cannabis sativa HOM05D008721 ORTHO05D000137 7.4e-09 65.1 177 29.9
CANSAT64G1718 Cannabis sativa HOM05D017160 ORTHO05D000137 7.4e-09 65.1 202 26.7
Sopen07g004240 Solanum pennellii HOM05D000635 ORTHO05D000488 7.4e-09 65.1 164 29.3
PGSC0003DMG400037565 Solanum tuberosum HOM05D000679 ORTHO05D000137 7.4e-09 65.1 123 33.3
CANSAT25G0487 Cannabis sativa HOM05D008721 ORTHO05D000137 1.3e-08 64.3 177 29.4
CANSAT80G1051 Cannabis sativa HOM05D008721 ORTHO05D000137 1.3e-08 64.3 177 29.4
CANSAT80G0449 Cannabis sativa HOM05D008721 ORTHO05D000137 1.6e-08 63.9 177 29.4
Solyc09g150106.1 Solanum lycopersicum HOM05D009268 ORTHO05D011733 2.1e-08 63.5 142 33.1
Sopen12g024090 Solanum pennellii HOM05D000679 ORTHO05D000137 2.1e-08 63.5 148 30.4
Nitab4.5_0006179g0010 Nicotiana tabacum HOM05D000679 ORTHO05D000137 2.8e-08 63.2 229 25.8
Nitab4.5_0006819g0100 Nicotiana tabacum HOM05D000679 ORTHO05D000137 2.8e-08 63.2 182 30.2
Sopen09g020980 Solanum pennellii HOM05D000679 ORTHO05D000137 2.8e-08 63.2 140 31.4
DCAR_018395 Daucus carota HOM05D000679 ORTHO05D000137 3.7e-08 62.8 104 33.7
Sopen10g028350 Solanum pennellii HOM05D000679 ORTHO05D000137 3.7e-08 62.8 142 28.9
Sopen12g022620 Solanum pennellii HOM05D010988 ORTHO05D000137 3.7e-08 62.8 162 31.5
SGA_v2.0_scaffold76G25157 Striga asiatica HOM05D002262 ORTHO05D000137 3.7e-08 62.8 130 30.0
CANSAT11G0393 Cannabis sativa HOM05D008721 ORTHO05D000137 4.8e-08 62.4 177 29.9
CANSAT21G0858 Cannabis sativa HOM05D008721 ORTHO05D000137 4.8e-08 62.4 177 28.8
PGSC0003DMG400043182 Solanum tuberosum HOM05D000679 ORTHO05D000137 4.8e-08 62.4 167 31.1
Nitab4.5_0008752g0040 Nicotiana tabacum HOM05D000679 ORTHO05D000482 8.1e-08 61.6 160 30.6
Solyc12g017670.3 Solanum lycopersicum HOM05D010988 ORTHO05D000137 1.1e-07 61.2 153 30.7
Sopen05g027730 Solanum pennellii HOM05D000679 ORTHO05D000137 1.1e-07 61.2 184 30.4
Sopen09g004400 Solanum pennellii HOM05D009268 ORTHO05D011733 1.1e-07 61.2 124 36.3
SGA_v2.0_scaffold306G48010 Striga asiatica HOM05D000679 ORTHO05D000137 1.1e-07 61.2 189 23.3
CANSAT11G1718 Cannabis sativa HOM05D009472 ORTHO05D000137 1.4e-07 60.8 139 29.5
CANSAT35G1851 Cannabis sativa HOM05D008636 ORTHO05D000137 1.4e-07 60.8 205 27.3
CANSAT56G3453 Cannabis sativa HOM05D008636 ORTHO05D000137 1.4e-07 60.8 205 27.3
Solyc07g041820.3 Solanum lycopersicum HOM05D010988 ORTHO05D000137 1.4e-07 60.8 222 28.4
Sopen01g014180 Solanum pennellii HOM05D000679 ORTHO05D000137 1.4e-07 60.8 148 29.7
PGSC0003DMG400008245 Solanum tuberosum HOM05D011278 ORTHO05D014267 1.8e-07 60.5 175 28.0
CANSAT01G0053 Cannabis sativa HOM05D008636 ORTHO05D000137 2.4e-07 60.1 205 27.3
CANSAT21G0896 Cannabis sativa HOM05D008636 ORTHO05D000137 2.4e-07 60.1 205 27.3
CANSAT54G0860 Cannabis sativa HOM05D008636 ORTHO05D000137 2.4e-07 60.1 205 27.3
CANSAT54G0513 Cannabis sativa HOM05D008636 ORTHO05D000137 3.1e-07 59.7 109 35.8
CANSAT54G0660 Cannabis sativa HOM05D008636 ORTHO05D000137 3.1e-07 59.7 181 27.6
DCAR_029854 Daucus carota HOM05D002749 ORTHO05D000137 3.1e-07 59.7 107 33.6
Nitab4.5_0000571g0200 Nicotiana tabacum HOM05D005063 ORTHO05D000482 3.1e-07 59.7 157 28.0
Nitab4.5_0000864g0180 Nicotiana tabacum HOM05D002262 ORTHO05D000137 3.1e-07 59.7 77 41.6
Nitab4.5_0004308g0010 Nicotiana tabacum HOM05D005877 ORTHO05D010356 4.0e-07 59.3 168 31.5
CANSAT11G0656 Cannabis sativa HOM05D008636 ORTHO05D000137 5.3e-07 58.9 205 27.3
CANSAT56G1233 Cannabis sativa HOM05D008636 ORTHO05D000137 5.3e-07 58.9 205 27.3
Nitab4.5_0000074g0140 Nicotiana tabacum HOM05D002262 ORTHO05D000137 5.3e-07 58.9 86 39.5
PGSC0003DMG400025964 Solanum tuberosum HOM05D000679 ORTHO05D000137 5.3e-07 58.9 178 28.1
CANSAT25G3489 Cannabis sativa HOM05D008636 ORTHO05D000137 6.9e-07 58.5 205 27.3
Nitab4.5_0003730g0010 Nicotiana tabacum HOM05D000679 ORTHO05D000482 6.9e-07 58.5 202 24.8
Nitab4.5_0005654g0010 Nicotiana tabacum HOM05D000679 ORTHO05D000137 6.9e-07 58.5 150 29.3
CANSAT54G1171 Cannabis sativa HOM05D008721 ORTHO05D000482 9.0e-07 58.2 144 30.6
Nitab4.5_0000125g0050 Nicotiana tabacum HOM05D002262 ORTHO05D000137 9.0e-07 58.2 130 33.8
Nitab4.5_0000596g0110 Nicotiana tabacum HOM05D000679 ORTHO05D000137 1.2e-06 57.8 172 30.8
Sopen11g022980 Solanum pennellii HOM05D000679 ORTHO05D000137 1.2e-06 57.8 101 36.6
SGA_v2.0_scaffold240G44055 Striga asiatica HOM05D000679 ORTHO05D000137 1.2e-06 57.8 123 30.1
Nitab4.5_0001300g0020 Nicotiana tabacum HOM05D000679 ORTHO05D000137 1.5e-06 57.4 126 31.7
Sopen00g004650 Solanum pennellii HOM05D000679 ORTHO05D000137 1.5e-06 57.4 130 30.0
Sopen06g003040 Solanum pennellii HOM05D000679 ORTHO05D000137 1.5e-06 57.4 118 29.7
Sopen09g026450 Solanum pennellii HOM05D000679 ORTHO05D000137 1.5e-06 57.4 118 29.7
Sopen12g007430 Solanum pennellii HOM05D000679 ORTHO05D000137 1.5e-06 57.4 118 29.7
Nitab4.5_0002373g0140 Nicotiana tabacum HOM05D000679 ORTHO05D000137 2.0e-06 57.0 183 26.8
Nitab4.5_0004917g0010 Nicotiana tabacum HOM05D000679 ORTHO05D000137 2.0e-06 57.0 191 29.8
SGA_v2.0_scaffold2471G54126 Striga asiatica HOM05D000679 ORTHO05D000137 2.0e-06 57.0 161 30.4
Nitab4.5_0008647g0030 Nicotiana tabacum HOM05D000679 ORTHO05D000482 2.6e-06 56.6 162 29.0
Sopen12g021510 Solanum pennellii HOM05D000679 ORTHO05D000137 2.6e-06 56.6 117 29.9
PGSC0003DMG400023258 Solanum tuberosum HOM05D000541 ORTHO05D000137 2.6e-06 56.6 127 30.7
DCAR_024959 Daucus carota HOM05D000679 ORTHO05D000137 3.4e-06 56.2 138 29.0
Nitab4.5_0024778g0020 Nicotiana tabacum HOM05D002262 ORTHO05D000137 3.4e-06 56.2 78 38.5
Solyc08g150133.1 Solanum lycopersicum HOM05D009268 ORTHO05D011733 3.4e-06 56.2 129 31.8
SGA_v2.0_scaffold1G00046 Striga asiatica HOM05D000679 ORTHO05D000137 3.4e-06 56.2 123 29.3
CANSAT11G0653 Cannabis sativa HOM05D009472 ORTHO05D000137 4.5e-06 55.8 79 43.0
CANSAT56G1481 Cannabis sativa HOM05D009472 ORTHO05D000482 5.8e-06 55.5 128 27.3
Solyc03g150143.1 Solanum lycopersicum HOM05D009268 ORTHO05D011733 5.8e-06 55.5 173 27.7
CAN.G1344.11 Capsicum annuum HOM05D000679 ORTHO05D000482 7.6e-06 55.1 145 31.0
SGA_v2.0_scaffold23G10125 Striga asiatica HOM05D000679 ORTHO05D000137 7.6e-06 55.1 158 27.8
CANSAT25G1319 Cannabis sativa HOM05D000679 ORTHO05D000137 9.9e-06 54.7 103 35.9
CANSAT80G0147 Cannabis sativa HOM05D017160 ORTHO05D000137 9.9e-06 54.7 122 27.9


User provided reference genes

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