Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009581g0010 Nicotiana tabacum HOM05D005879 ORTHO05D007432 5.4e-201 704.1 359 100.0
PGSC0003DMG400027189 Solanum tuberosum HOM05D005879 ORTHO05D007432 3.1e-156 555.4 360 80.6
Sopen05g031350 Solanum pennellii HOM05D005879 ORTHO05D007432 2.9e-154 548.9 360 79.4
Solyc05g052840.1 Solanum lycopersicum HOM05D005879 ORTHO05D007432 2.3e-151 539.3 355 79.2
CAN.G151.26 Capsicum annuum HOM05D005879 ORTHO05D007432 1.3e-146 523.5 356 76.7
Peaxi162Scf00054g00186 Petunia axillaris HOM05D005879 ORTHO05D007432 6.7e-143 511.1 362 76.0
MSTRG.3773 Avicennia marina HOM05D005879 ORTHO05D007432 6.1e-112 408.3 357 63.3
Dinv21896 Davidia involucrata HOM05D005879 ORTHO05D007432 1.4e-111 407.1 360 63.3
Cc07_g15080 Coffea canephora HOM05D005879 ORTHO05D007432 4.0e-111 405.6 353 63.5
Migut.L00135 Erythranthe guttata HOM05D005879 ORTHO05D007432 5.7e-110 401.7 354 60.5
SGA_v2.0_scaffold115G32189 Striga asiatica HOM05D005879 ORTHO05D007432 1.3e-109 400.6 344 62.8
SGA_v2.0_scaffold334G49051 Striga asiatica HOM05D005879 ORTHO05D007432 2.2e-109 399.8 344 62.8
Hma1.2p1_0308F.1_g120270 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 5.7e-102 375.2 360 59.4
HanXRQChr17g0554861 Helianthus annuus HOM05D005879 ORTHO05D007432 1.3e-101 374.0 345 58.8
Oeu032409.1 Olea europaea HOM05D005879 ORTHO05D007432 2.8e-101 372.9 338 60.9
ECA233G0618 Erigeron canadensis HOM05D005879 ORTHO05D007432 3.7e-101 372.5 340 57.4
Cfa017077 Carpinus fangiana HOM05D005879 ORTHO05D007432 1.4e-100 370.5 358 57.5
PSO339G2019 Papaver somniferum HOM05D005879 ORTHO05D007432 7.0e-100 368.2 356 56.5
RcHm_v2.0_Chr2g0113151 Rosa chinensis HOM05D005879 ORTHO05D007432 7.0e-100 368.2 355 57.2
Sc05g0001510 Simmondsia chinensis HOM05D005879 ORTHO05D007432 7.0e-100 368.2 339 58.1
Gohir.A11G202400 Gossypium hirsutum HOM05D005879 ORTHO05D007432 1.6e-99 367.1 356 60.1
unitig_32.g10701 Utricularia gibba HOM05D005879 ORTHO05D007432 1.6e-99 367.1 339 58.4
QL06p049237 Quercus lobata HOM05D005879 ORTHO05D007432 3.5e-99 365.9 347 58.8
Nn2g14007 Nelumbo nucifera HOM05D005879 ORTHO05D007432 4.5e-99 365.5 362 56.4
Rhsim01G0133800 Rhododendron simsii HOM05D005879 ORTHO05D007432 4.5e-99 365.5 372 55.4
RhsimUnG0233600 Rhododendron simsii HOM05D005879 ORTHO05D007432 4.5e-99 365.5 372 55.4
Haze_24910 Corylus avellana HOM05D005879 ORTHO05D007432 7.8e-99 364.8 332 59.3
Haze_24914 Corylus avellana HOM05D005879 ORTHO05D007432 7.8e-99 364.8 332 59.3
PSO801G0022 Papaver somniferum HOM05D005879 ORTHO05D007432 7.8e-99 364.8 356 55.6
TAR381G0927 Trochodendron aralioides HOM05D005879 ORTHO05D007432 7.8e-99 364.8 360 55.0
DCAR_003483 Daucus carota HOM05D005879 ORTHO05D007432 1.7e-98 363.6 339 59.0
FAN26G1261 Fragaria x ananassa HOM05D005879 ORTHO05D007432 2.9e-98 362.8 362 55.2
Lalb_Chr06g0163471 Lupinus albus HOM05D005879 ORTHO05D007432 1.1e-97 360.9 351 56.4
vmacro12962 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 1.1e-97 360.9 386 53.1
FvH4_1g20700 Fragaria vesca HOM05D005879 ORTHO05D007432 1.5e-97 360.5 360 55.8
TWI77G0137 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 1.5e-97 360.5 349 55.9
EL10Ac5g10569 Beta vulgaris HOM05D005879 ORTHO05D007432 1.9e-97 360.1 359 54.9
CiPaw.03G142700 Carya illinoinensis HOM05D005879 ORTHO05D007432 3.3e-97 359.4 337 59.1
CsaV3_4G004590 Cucumis sativus L. HOM05D005879 ORTHO05D007432 4.3e-97 359.0 358 55.6
CsaV3_UNG120970 Cucumis sativus L. HOM05D005879 ORTHO05D007432 4.3e-97 359.0 358 55.6
CsaV3_UNG160200 Cucumis sativus L. HOM05D005879 ORTHO05D007432 4.3e-97 359.0 358 55.6
CsaV3_UNG223580 Cucumis sativus L. HOM05D005879 ORTHO05D007432 4.3e-97 359.0 358 55.6
Aqoxy3G00238 Aquilegia oxysepala HOM05D005879 ORTHO05D007432 5.6e-97 358.6 360 55.3
Lsat_1_v5_gn_8_137181 Lactuca sativa HOM05D005879 ORTHO05D007432 7.3e-97 358.2 337 57.0
MD05G1043000 Malus domestica HOM05D005879 ORTHO05D007432 1.2e-96 357.5 364 56.3
ClCG07G017360 Citrullus lanatus HOM05D005879 ORTHO05D007432 2.1e-96 356.7 361 56.5
Gohir.D11G220800 Gossypium hirsutum HOM05D005879 ORTHO05D007432 2.8e-96 356.3 356 58.7
Prupe.6G188100 Prunus persica HOM05D005879 ORTHO05D007432 3.6e-96 355.9 365 55.9
Ciclev10020973m.g Citrus clementina HOM05D005879 ORTHO05D007432 6.1e-96 355.1 334 58.4
Ah.11g050680 Amaranthus hybridus HOM05D005879 ORTHO05D007432 8.0e-96 354.8 359 53.2
SalBow7G4497 Salvia bowleyana HOM05D005879 ORTHO05D007432 1.0e-95 354.4 331 58.3
AUR62028624 Chenopodium quinoa HOM05D005879 ORTHO05D007432 2.3e-95 353.2 359 52.6
TPR.G6200 Trifolium pratense HOM05D005879 ORTHO05D007432 3.1e-95 352.8 383 52.5
Eucgr.B03900 Eucalyptus grandis HOM05D005879 ORTHO05D007432 4.0e-95 352.4 357 57.1
Gorai.007G237000 Gossypium raimondii HOM05D005879 ORTHO05D007432 4.0e-95 352.4 356 58.1
Atru.chr7.1487 Acer truncatum HOM05D005879 ORTHO05D007432 6.8e-95 351.7 346 53.8
VMungo0251G0721 Vigna mungo HOM05D005879 ORTHO05D007432 8.9e-95 351.3 330 59.1
Sabra05G0061500 Salix brachista HOM05D005879 ORTHO05D007432 1.2e-94 350.9 344 56.7
arahy.Tifrunner.gnm1.ann1.Y76I0L Arachis hypogaea HOM05D005879 ORTHO05D007432 1.5e-94 350.5 349 56.4
MELO3C017607.2 Cucumis melo HOM05D005879 ORTHO05D007432 1.5e-94 350.5 358 55.6
Manes.12G134100 Manihot esculenta HOM05D005879 ORTHO05D007432 1.5e-94 350.5 353 54.7
Cpa.g.sc615.1 Carica papaya HOM05D005879 ORTHO05D007432 2.0e-94 350.1 343 57.4
THA.LOC104807688 Tarenaya hassleriana HOM05D005879 ORTHO05D007432 2.0e-94 350.1 362 54.1
Sed0022481 Sechium edule HOM05D005879 ORTHO05D007432 3.4e-94 349.4 351 53.6
AUR62008049 Chenopodium quinoa HOM05D005879 ORTHO05D007432 5.8e-94 348.6 359 52.1
Lj4g0026645 Lotus japonicus HOM05D005879 ORTHO05D007432 1.3e-93 347.4 358 55.0
Ca_17743_v3 Cicer arietinum L. HOM05D005879 ORTHO05D007432 2.2e-93 346.7 357 54.9
TWI81G0999 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 6.4e-93 345.1 337 55.5
Potri.005G074700 Populus trichocarpa HOM05D005879 ORTHO05D007432 1.1e-92 344.4 337 56.7
PSO170G2230 Papaver somniferum HOM05D005879 ORTHO05D007432 1.4e-92 344.0 350 54.0
Medtr8g090180 Medicago truncatula HOM05D005879 ORTHO05D007432 1.9e-92 343.6 360 54.4
CARHR246770 Cardamine hirsuta HOM05D005879 ORTHO05D007432 5.4e-92 342.0 357 52.9
Glyma.08G134800 Glycine max HOM05D005879 ORTHO05D007432 2.0e-91 340.1 338 56.8
arahy.Tifrunner.gnm1.ann1.F9QSZL Arachis hypogaea HOM05D005879 ORTHO05D007432 2.7e-91 339.7 349 55.0
Phvul.002G256800 Phaseolus vulgaris HOM05D005879 ORTHO05D007432 7.8e-91 338.2 330 58.2
COL.COLO4_27255 Corchorus olitorius HOM05D005879 ORTHO05D007432 5.0e-90 335.5 315 58.4
AL7G12180 Arabidopsis lyrata HOM05D005879 ORTHO05D007432 6.6e-90 335.1 358 52.8
Carub.0007s0187 Capsella rubella HOM05D005879 ORTHO05D007432 2.5e-89 333.2 362 51.4
Glyma.05G177800 Glycine max HOM05D005879 ORTHO05D007432 1.2e-88 330.9 329 56.8
AT4G39920 Arabidopsis thaliana HOM05D005879 ORTHO05D007432 2.8e-88 329.7 354 51.4
Aa31LG6G15340 Aethionema arabicum HOM05D005879 ORTHO05D007432 8.0e-88 328.2 361 50.4
ATR0584G053 Amborella trichopoda HOM05D005879 ORTHO05D007432 8.0e-88 328.2 352 50.3
Sp7g35960 Schrenkiella parvula HOM05D005879 ORTHO05D007432 1.1e-87 327.8 357 51.5
Thhalv10025595m.g Eutrema salsugineum HOM05D005879 ORTHO05D007432 1.4e-87 327.4 358 52.5
MBI05_g37046_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 2.6e-86 323.2 367 48.8
BolC7t46692H Brassica oleracea HOM05D005879 ORTHO05D007432 1.7e-85 320.5 358 50.8
BraA03t15633Z Brassica rapa HOM05D005879 ORTHO05D007432 3.7e-85 319.3 357 49.9
A03p65800 Brassica napus HOM05D005879 ORTHO05D007432 6.4e-85 318.5 357 49.9
C07p62780 Brassica napus HOM05D005879 ORTHO05D007432 9.2e-84 314.7 358 50.0
Duzib147G1529 Durio zibethinus HOM05D005879 ORTHO05D007432 1.7e-82 310.5 364 50.3
vmacro17311 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 7.3e-81 305.1 406 45.8
PGR102G2441 Punica granatum HOM05D005879 ORTHO05D007432 6.2e-80 302.0 339 51.3
Thecc.01G100600 Theobroma cacao HOM05D005879 ORTHO05D007432 6.2e-80 302.0 354 49.7
FAN19G0980 Fragaria x ananassa HOM05D005879 ORTHO05D007432 6.8e-79 298.5 337 49.6
Os02g0557000 Oryza sativa ssp. japonica HOM05D005879 ORTHO05D007432 1.1e-76 291.2 350 48.9
CDE04G0616 Ceratophyllum demersum HOM05D005879 ORTHO05D007432 6.0e-75 285.4 365 45.2
HPP92_013925 Vanilla planifolia HOM05D005879 ORTHO05D007432 9.5e-73 278.1 361 44.9
Zm00001eb243870 Zea mays HOM05D005879 ORTHO05D007432 1.5e-70 270.8 333 47.4
Hma1.2p1_0308F.1_g120280 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 3.2e-68 263.1 177 72.9
VMungo0540G1211 Vigna mungo HOM05D005879 ORTHO05D007432 1.8e-63 247.3 211 58.8
AagrBONN_evm.TU.Sc2ySwM_117.1918 Anthoceros agrestis HOM05D005879 ORTHO05D007432 4.4e-62 242.7 346 42.2
Pp3c13_2250 Physcomitrium patens HOM05D005879 ORTHO05D007432 4.4e-62 242.7 340 44.1
Atru.chr11.1549 Acer truncatum HOM05D005879 ORTHO05D007432 8.4e-61 238.4 179 63.7
SMO143G0283 Selaginella moellendorffii HOM05D005879 ORTHO05D007432 1.2e-59 234.6 339 41.0
Mapoly0002s0046 Marchantia polymorpha HOM05D005879 ORTHO05D007432 1.7e-58 230.7 351 40.5
Psat7g055120 Pisum sativum HOM05D005879 ORTHO05D007432 1.4e-55 221.1 355 42.3
FAN23G0004 Fragaria x ananassa HOM05D005879 ORTHO05D007432 2.6e-54 216.9 132 73.5
arahy.Tifrunner.gnm1.ann1.DH96WI Arachis hypogaea HOM05D005879 ORTHO05D007432 2.2e-53 213.8 313 44.1
SEGI_25682 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 6.4e-53 212.2 208 53.4
Atru.chr7.1491 Acer truncatum HOM05D005879 ORTHO05D007432 8.1e-48 195.3 250 46.8
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 8.1e-48 195.3 375 36.3
MD01G1031400 Malus domestica HOM05D005879 ORTHO05D007432 5.8e-46 189.1 129 67.4
Potri.007G093800 Populus trichocarpa HOM05D005879 ORTHO05D007432 5.5e-44 182.6 353 36.0
MCO11G662 Micromonas commoda HOM05D005879 ORTHO05D007432 6.7e-42 175.6 369 32.5
Actinidia28237 Actinidia chinensis HOM05D005879 ORTHO05D007432 4.8e-40 169.5 331 36.9
C03p78540 Brassica napus HOM05D005879 ORTHO05D007432 2.6e-38 163.7 332 37.3
BcaB03g12293 Brassica carinata HOM05D005879 ORTHO05D007432 5.1e-34 149.4 217 44.7
Migut.L00117 Erythranthe guttata HOM05D005879 ORTHO05D007432 9.0e-31 138.7 88 72.7
BolC3t20106H Brassica oleracea HOM05D005879 ORTHO05D007432 2.6e-30 137.1 332 34.6
PRCOL_00003435 Prasinoderma coloniale HOM05D005879 ORTHO05D007432 4.5e-30 136.3 344 29.9
HPP92_014012 Vanilla planifolia HOM05D005879 ORTHO05D007432 7.7e-30 135.6 261 38.7
Cre03.g200150 Chlamydomonas reinhardtii HOM05D005879 ORTHO05D007432 2.1e-27 127.5 327 28.1
BcaNung02300 Brassica carinata HOM05D005879 ORTHO05D007432 1.4e-23 114.8 161 46.0
MBI15_g14577_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 1.8e-23 114.4 85 58.8
GSVIVG01004856001 Vitis vinifera HOM05D005879 ORTHO05D007432 9.1e-23 112.1 151 49.0
BraA08t34278Z Brassica rapa HOM05D005879 ORTHO05D007432 5.0e-21 106.3 62 75.8
PRCOL_00004923 Prasinoderma coloniale HOM05D005879 ORTHO05D034414 1.0e-18 98.6 134 34.3
Hma1.2p1_0297F.1_g117050 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 6.7e-18 95.9 99 53.5
A08p23210 Brassica napus HOM05D005879 ORTHO05D007432 1.2e-14 85.1 49 73.5
SEGI_41531 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 4.5e-14 83.2 143 37.8
Cfa025806 Carpinus fangiana HOM05D005879 ORTHO05D123935 9.7e-09 65.5 110 30.0
Pp3c4_21480 Physcomitrium patens HOM05D005879 ORTHO05D007432 4.1e-07 60.1 58 53.4


User provided reference genes

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