Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009570g0010 Nicotiana tabacum HOM05D006080 ORTHO05D007382 3.2e-219 765.4 588 100.0
Nitab4.5_0000249g0340 Nicotiana tabacum HOM05D006080 ORTHO05D007382 1.7e-207 726.5 588 95.1
PGSC0003DMG401029758 Solanum tuberosum HOM05D006080 ORTHO05D007382 6.4e-159 565.1 550 86.7
Sopen01g047140 Solanum pennellii HOM05D006080 ORTHO05D007382 1.9e-158 563.5 552 85.9
CAN.G1702.1 Capsicum annuum HOM05D006080 ORTHO05D007382 2.5e-155 553.1 549 85.1
Solyc01g104630.3 Solanum lycopersicum HOM05D006080 ORTHO05D007382 1.6e-146 523.9 574 80.0
Peaxi162Scf01290g00029 Petunia axillaris HOM05D006080 ORTHO05D007382 8.2e-114 415.2 434 88.9
MSTRG.16549 Avicennia marina HOM05D006080 ORTHO05D007382 2.5e-94 350.5 553 66.2
Oeu000645.1 Olea europaea HOM05D006080 ORTHO05D007382 1.2e-88 331.6 549 66.1
Lj9C313T10 Lonicera japonica HOM05D006080 ORTHO05D007382 9.4e-86 322.0 573 63.9
Migut.B00654 Erythranthe guttata HOM05D006080 ORTHO05D007382 1.2e-83 315.1 555 64.3
Dinv24252 Davidia involucrata HOM05D006080 ORTHO05D007382 2.0e-83 314.3 563 63.1
CSS0013189 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 1.0e-79 302.0 538 63.9
CSS0013911 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 1.0e-79 302.0 538 63.9
SGA_v2.0_scaffold332G48925 Striga asiatica HOM05D006080 ORTHO05D007382 8.0e-77 292.4 538 63.4
CSS0008787 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 6.8e-76 289.3 543 61.1
SalBow5G2015 Salvia bowleyana HOM05D006080 ORTHO05D007382 1.2e-72 278.5 542 62.9
Rhsim04G0100300 Rhododendron simsii HOM05D006080 ORTHO05D007382 4.6e-72 276.6 516 64.1
SalBow5G4726 Salvia bowleyana HOM05D006080 ORTHO05D007382 1.0e-71 275.4 542 62.4
Rhsim12G0001600 Rhododendron simsii HOM05D006080 ORTHO05D007382 3.6e-69 266.9 504 64.7
Actinidia00227 Actinidia chinensis HOM05D006080 ORTHO05D007382 2.7e-64 250.8 482 66.6
vmacro00920 Vaccinium macrocarpon HOM05D006080 ORTHO05D007382 2.7e-64 250.8 523 60.4
DCAR_029235 Daucus carota HOM05D006080 ORTHO05D007382 1.9e-62 244.6 536 58.8
SalBow6G3562 Salvia bowleyana HOM05D006080 ORTHO05D007382 3.2e-57 227.3 550 57.5
SalBow6G5833 Salvia bowleyana HOM05D006080 ORTHO05D007382 8.6e-55 219.2 550 57.1
Cc02_g22120 Coffea canephora HOM05D006080 ORTHO05D007382 1.2e-53 215.3 320 55.3
ECA238G3807 Erigeron canadensis HOM05D006080 ORTHO05D007382 3.9e-47 193.7 485 63.5
HanXRQChr10g0292001 Helianthus annuus HOM05D006080 ORTHO05D007382 7.3e-46 189.5 550 50.5
HanXRQChr05g0146121 Helianthus annuus HOM05D006080 ORTHO05D007382 1.6e-45 188.3 538 51.9
Ah.07g204920 Amaranthus hybridus HOM05D002607 ORTHO05D008816 2.0e-43 181.4 519 54.7
COL.COLO4_18095 Corchorus olitorius HOM05D006080 ORTHO05D007382 5.4e-41 173.3 211 46.0
Sed0020593 Sechium edule HOM05D006080 ORTHO05D007382 5.8e-35 153.3 242 40.1
AUR62044025 Chenopodium quinoa HOM05D006080 ORTHO05D007382 3.9e-31 140.6 521 49.5
Duzib168G1192 Durio zibethinus HOM05D006080 ORTHO05D007382 3.9e-31 140.6 194 43.3
MBI19_g16224_MAGBIO Magnolia biondii HOM05D006080 ORTHO05D007382 5.1e-31 140.2 243 37.0
Thecc.09G076600 Theobroma cacao HOM05D006080 ORTHO05D007382 1.1e-30 139.0 201 40.3
Lsat_1_v5_gn_2_12120 Lactuca sativa HOM05D006080 ORTHO05D007382 4.3e-30 137.1 240 37.5
Aqoxy5G04299 Aquilegia oxysepala HOM05D006080 ORTHO05D007382 5.6e-30 136.7 212 41.0
AUR62003304 Chenopodium quinoa HOM05D006080 ORTHO05D007382 7.4e-30 136.3 521 54.7
Lj4g0003679 Lotus japonicus HOM05D006080 ORTHO05D007382 7.4e-30 136.3 252 41.7
Gorai.013G224200 Gossypium raimondii HOM05D006080 ORTHO05D007382 2.8e-29 134.4 193 42.0
Sabra06G0110900 Salix brachista HOM05D006080 ORTHO05D007382 6.9e-28 129.8 223 41.3
Duzib187G1039 Durio zibethinus HOM05D006080 ORTHO05D007382 1.2e-27 129.0 192 40.6
Gohir.A13G190700 Gossypium hirsutum HOM05D006080 ORTHO05D007382 1.2e-27 129.0 191 40.8
Hund19654 Selenicereus undatus HOM05D006080 ORTHO05D007382 2.6e-27 127.9 228 35.1
Sc14g0000540 Simmondsia chinensis HOM05D006080 ORTHO05D007382 2.6e-27 127.9 197 41.1
MD02G1091700 Malus domestica HOM05D006080 ORTHO05D007382 7.6e-27 126.3 222 40.1
CDE02G4345 Ceratophyllum demersum HOM05D006080 ORTHO05D007382 2.9e-26 124.4 236 33.1
VMungo1215G0155 Vigna mungo HOM05D006080 ORTHO05D007382 2.9e-26 124.4 211 36.0
AUR62016281 Chenopodium quinoa HOM05D006080 ORTHO05D007382 4.9e-26 123.6 494 49.8
Manes.09G158700 Manihot esculenta HOM05D006080 ORTHO05D007382 8.4e-26 122.9 180 43.3
SHI30075 Sapria himalayana HOM05D006080 ORTHO05D007382 1.1e-25 122.5 211 36.0
Lj6g0017816 Lotus japonicus HOM05D006080 ORTHO05D007382 1.4e-25 122.1 287 41.8
Gorai.009G035900 Gossypium raimondii HOM05D006080 ORTHO05D007382 3.2e-25 120.9 214 36.0
TWI14G1385 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 4.2e-25 120.6 205 42.0
MD15G1217800 Malus domestica HOM05D006080 ORTHO05D007382 5.5e-25 120.2 187 42.8
CDE06G1744 Ceratophyllum demersum HOM05D000591 ORTHO05D000579 1.2e-24 119.0 211 34.1
TPR.G27762 Trifolium pratense HOM05D006080 ORTHO05D007382 2.1e-24 118.2 542 43.9
Potri.006G141800 Populus trichocarpa HOM05D006080 ORTHO05D007382 2.7e-24 117.9 216 40.3
TPR.G30187 Trifolium pratense HOM05D006080 ORTHO05D007382 4.6e-24 117.1 227 35.7
Prupe.7G198600 Prunus persica HOM05D006080 ORTHO05D007382 2.3e-23 114.8 190 40.5
Lalb_Chr23g0276361 Lupinus albus HOM05D006080 ORTHO05D007382 3.0e-23 114.4 202 36.6
EL10Ac6g14755 Beta vulgaris HOM05D000249 ORTHO05D000206 6.7e-23 113.2 149 43.0
CARHR103620 Cardamine hirsuta HOM05D006080 ORTHO05D007382 6.7e-23 113.2 215 35.3
QL02p058222 Quercus lobata HOM05D006080 ORTHO05D007382 8.7e-23 112.8 182 41.8
QL93p0100_0628 Quercus lobata HOM05D006080 ORTHO05D007382 8.7e-23 112.8 184 41.3
FAN04G2899 Fragaria x ananassa HOM05D006080 ORTHO05D007382 1.1e-22 112.5 227 36.6
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 2.5e-22 111.3 176 39.8
Aa31sc481G20 Aethionema arabicum HOM05D006080 ORTHO05D007382 3.3e-22 110.9 217 32.7
VMungo1309G1452 Vigna mungo HOM05D006080 ORTHO05D007382 3.3e-22 110.9 211 33.2
CiPaw.03G206100 Carya illinoinensis HOM05D006080 ORTHO05D007382 7.4e-22 109.8 210 39.0
Nn7g36733 Nelumbo nucifera HOM05D006080 ORTHO05D007382 9.6e-22 109.4 167 43.7
Psat1g133120 Pisum sativum HOM05D006080 ORTHO05D007382 1.3e-21 109.0 200 35.0
Phvul.011G177400 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 1.6e-21 108.6 194 34.5
Sp3g24500 Schrenkiella parvula HOM05D006080 ORTHO05D007382 1.6e-21 108.6 198 38.4
Medtr2g041700 Medicago truncatula HOM05D006080 ORTHO05D007382 4.8e-21 107.1 242 32.2
Phvul.009G114250 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 8.1e-21 106.3 194 34.0
Sc08g0008900 Simmondsia chinensis HOM05D006080 ORTHO05D007382 4.0e-20 104.0 203 34.5
Oeu051440.2 Olea europaea HOM05D006080 ORTHO05D007382 9.0e-20 102.8 66 71.2
Ciclev10007804m.g Citrus clementina HOM05D006080 ORTHO05D007382 1.2e-19 102.4 204 34.8
THA.LOC104808885 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 3.4e-19 100.9 197 34.5
AL3G43560 Arabidopsis lyrata HOM05D006080 ORTHO05D007382 5.8e-19 100.1 195 36.4
AT2G06000 Arabidopsis thaliana HOM05D006080 ORTHO05D007382 1.0e-18 99.4 195 36.4
Zm00001eb081680 Zea mays HOM05D006080 ORTHO05D007382 1.3e-18 99.0 422 57.6
Phvul.009G021500 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 6.5e-18 96.7 191 33.5
Ca_02204_v3 Cicer arietinum L. HOM05D006080 ORTHO05D007382 8.4e-18 96.3 141 37.6
arahy.Tifrunner.gnm1.ann1.3R1N4J Arachis hypogaea HOM05D006080 ORTHO05D007382 1.1e-17 95.9 192 33.3
Lalb_Chr07g0181201 Lupinus albus HOM05D006080 ORTHO05D007382 1.4e-17 95.5 165 36.4
arahy.Tifrunner.gnm1.ann1.YW7MJY Arachis hypogaea HOM05D006080 ORTHO05D007382 3.2e-17 94.4 164 39.0
Carub.0003s2711 Capsella rubella HOM05D006080 ORTHO05D007382 5.5e-17 93.6 203 33.0
Cpa.g.sc28.32 Carica papaya HOM05D006080 ORTHO05D007382 5.5e-17 93.6 152 44.1
Glyma.17G049100 Glycine max HOM05D006080 ORTHO05D007382 5.5e-17 93.6 173 34.7
Gohir.D13G196370 Gossypium hirsutum HOM05D006080 ORTHO05D007382 7.1e-17 93.2 114 44.7
Thhalv10002477m.g Eutrema salsugineum HOM05D006080 ORTHO05D007382 2.1e-16 91.7 191 36.1
Glyma.04G019000 Glycine max HOM05D006080 ORTHO05D007382 2.7e-16 91.3 191 31.9
Zm00001eb423410 Zea mays HOM05D006080 ORTHO05D007382 4.6e-16 90.5 419 53.0
PGR142G0728 Punica granatum HOM05D006080 ORTHO05D007382 1.0e-15 89.4 183 32.8
Os04g0446100 Oryza sativa ssp. japonica HOM05D006080 ORTHO05D007382 1.3e-15 89.0 441 53.5
Eucgr.C00814 Eucalyptus grandis HOM05D006080 ORTHO05D007382 1.8e-15 88.6 122 41.0
C07p09380 Brassica napus HOM05D006080 ORTHO05D007382 2.3e-15 88.2 191 32.5
BolC7t41361H Brassica oleracea HOM05D006080 ORTHO05D007382 2.3e-15 88.2 191 32.5
BcaC06g35949 Brassica carinata HOM05D006080 ORTHO05D007382 3.3e-14 84.3 191 31.9
BraA07t28425Z Brassica rapa HOM05D006080 ORTHO05D007382 5.7e-14 83.6 191 31.4
Glyma.06G019300 Glycine max HOM05D006080 ORTHO05D007382 5.7e-14 83.6 196 30.6
A07p06330 Brassica napus HOM05D006080 ORTHO05D007382 7.4e-14 83.2 190 31.6
BcaB06g26878 Brassica carinata HOM05D006080 ORTHO05D007382 9.6e-14 82.8 192 31.2
CANSAT56G0731 Cannabis sativa HOM05D006080 ORTHO05D007382 3.7e-13 80.9 151 41.1
FAN08G1188 Fragaria x ananassa HOM05D006080 ORTHO05D007382 3.7e-13 80.9 111 46.8
THA.LOC104815335 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 3.7e-13 80.9 191 31.4
Medtr4g040410 Medicago truncatula HOM05D006080 ORTHO05D007382 4.8e-13 80.5 184 31.0
RcHm_v2.0_Chr7g0227901 Rosa chinensis HOM05D006080 ORTHO05D007382 4.8e-13 80.5 144 41.0
FAN18G2998 Fragaria x ananassa HOM05D006080 ORTHO05D007382 1.1e-12 79.3 111 45.9
FvH4_5g31880 Fragaria vesca HOM05D006080 ORTHO05D007382 1.8e-12 78.6 111 45.9
TWI59G0376 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 1.8e-12 78.6 107 42.1
Haze_26015 Corylus avellana HOM05D006080 ORTHO05D007382 4.1e-12 77.4 150 38.7
Cfa002986 Carpinus fangiana HOM05D006080 ORTHO05D007382 5.3e-12 77.0 110 42.7
CsaV3_2G001150 Cucumis sativus L. HOM05D006080 ORTHO05D007382 3.4e-11 74.3 145 37.2
ClCG11G001430 Citrullus lanatus HOM05D006080 ORTHO05D007382 4.5e-11 73.9 142 38.0
MELO3C004654.2 Cucumis melo HOM05D006080 ORTHO05D007382 7.6e-11 73.2 145 36.6
VMungo1309G1576 Vigna mungo HOM05D000104 ORTHO05D009920 3.8e-10 70.9 113 38.1
VMungo1215G0866 Vigna mungo HOM05D000015 ORTHO05D007382 6.5e-10 70.1 67 56.7
Glyma.12G191600 Glycine max HOM05D000104 ORTHO05D009920 1.4e-09 68.9 113 37.2
TAR383G0956 Trochodendron aralioides HOM05D006080 ORTHO05D007382 1.9e-09 68.6 106 38.7
Glyma.01G073500 Glycine max HOM05D000104 ORTHO05D009920 7.2e-09 66.6 113 37.2
CiPaw.13G029800 Carya illinoinensis HOM05D000104 ORTHO05D009920 3.5e-08 64.3 113 34.5
Phvul.009G206300 Phaseolus vulgaris HOM05D000104 ORTHO05D009920 3.5e-08 64.3 113 35.4
Haze_02747 Corylus avellana HOM05D000104 ORTHO05D009920 4.6e-08 63.9 113 34.5
Manes.08G089400 Manihot esculenta HOM05D000104 ORTHO05D009920 6.1e-08 63.5 120 34.2
Medtr7g044790 Medicago truncatula HOM05D000104 ORTHO05D009920 6.1e-08 63.5 111 32.4
QL04p034761 Quercus lobata HOM05D000104 ORTHO05D009920 7.9e-08 63.2 101 39.6
Atru.BG.18.p Acer truncatum HOM05D006080 ORTHO05D007382 1.3e-07 62.4 87 39.1
Psat3g158640 Pisum sativum HOM05D000104 ORTHO05D009920 1.3e-07 62.4 113 32.7
Oeu032648.1 Olea europaea HOM05D006080 ORTHO05D007382 1.8e-07 62.0 39 66.7
Hma1.2p1_1014F.1_g247820 Hydrangea macrophylla HOM05D000104 ORTHO05D009920 2.3e-07 61.6 113 34.5
Ca_23477_v3 Cicer arietinum L. HOM05D000104 ORTHO05D009920 3.0e-07 61.2 113 32.7
Prupe.2G122500 Prunus persica HOM05D000104 ORTHO05D009920 3.0e-07 61.2 113 34.5
CSS0035815 Camellia sinensis var. sinensis HOM05D007155 ORTHO05D003034 3.9e-07 60.8 143 28.7
Lj1g0020796 Lotus japonicus HOM05D000104 ORTHO05D009920 5.1e-07 60.5 113 31.9
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 6.7e-07 60.1 113 32.7
Eucgr.D00277 Eucalyptus grandis HOM05D000104 ORTHO05D009920 6.7e-07 60.1 113 32.7
Oeu024268.1 Olea europaea HOM05D000104 ORTHO05D009920 6.7e-07 60.1 111 30.6
GSVIVG01031674001 Vitis vinifera HOM05D000104 ORTHO05D009920 6.7e-07 60.1 126 34.9
CAN.G809.50 Capsicum annuum HOM05D007155 ORTHO05D003034 8.7e-07 59.7 143 26.6
Migut.F00552 Erythranthe guttata HOM05D000104 ORTHO05D009920 8.7e-07 59.7 65 41.5
arahy.Tifrunner.gnm1.ann1.H4NKJU Arachis hypogaea HOM05D000104 ORTHO05D009920 1.1e-06 59.3 113 31.0
MD02G1218600 Malus domestica HOM05D000104 ORTHO05D009920 1.1e-06 59.3 101 35.6
Potri.014G056400 Populus trichocarpa HOM05D000104 ORTHO05D009920 1.5e-06 58.9 113 33.6
CSS0017144 Camellia sinensis var. sinensis HOM05D007155 ORTHO05D003034 1.9e-06 58.5 138 29.0
Lalb_Chr03g0040111 Lupinus albus HOM05D000104 ORTHO05D009920 2.5e-06 58.2 113 31.0
Aqoxy3G03779 Aquilegia oxysepala HOM05D006232 ORTHO05D007746 3.3e-06 57.8 101 31.7
Gohir.D08G158800 Gossypium hirsutum HOM05D000104 ORTHO05D008354 4.3e-06 57.4 113 31.9
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 4.3e-06 57.4 113 31.9
Thecc.01G387700 Theobroma cacao HOM05D000104 ORTHO05D009920 4.3e-06 57.4 113 32.7
arahy.Tifrunner.gnm1.ann1.JWX42Q Arachis hypogaea HOM05D000104 ORTHO05D009920 5.7e-06 57.0 113 31.0
FAN06G4216 Fragaria x ananassa HOM05D000104 ORTHO05D009920 5.7e-06 57.0 111 32.4
FAN06G4654 Fragaria x ananassa HOM05D000104 ORTHO05D009920 5.7e-06 57.0 111 32.4
Nitab4.5_0000103g0110 Nicotiana tabacum HOM05D000104 ORTHO05D009920 5.7e-06 57.0 113 31.9
FvH4_7g09470 Fragaria vesca HOM05D000104 ORTHO05D009920 7.4e-06 56.6 111 32.4
FAN10G2081 Fragaria x ananassa HOM05D000104 ORTHO05D009920 7.4e-06 56.6 111 32.4
Nitab4.5_0001130g0070 Nicotiana tabacum HOM05D000104 ORTHO05D009920 7.4e-06 56.6 113 31.0
SalBow7G4478 Salvia bowleyana HOM05D007155 ORTHO05D003034 7.4e-06 56.6 142 27.5
arahy.Tifrunner.gnm1.ann1.W2W9XI Arachis hypogaea HOM05D000104 ORTHO05D009920 9.7e-06 56.2 113 31.0


User provided reference genes

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