Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 1.9e-210 735.7 411 100.0
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 3.7e-161 572.0 411 77.9
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 1.6e-156 556.6 406 75.4
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 2.7e-156 555.8 406 76.1
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 3.4e-151 538.9 418 77.5
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 5.0e-134 481.9 406 66.7
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 7.2e-109 398.3 408 55.9
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 9.5e-109 397.9 410 57.6
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 3.5e-103 379.4 413 55.7
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 1.0e-102 377.9 293 71.0
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 8.6e-102 374.8 409 53.5
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 1.1e-101 374.4 392 64.8
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 1.5e-101 374.0 411 54.7
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 2.1e-100 370.2 408 52.7
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 2.3e-99 366.7 410 54.1
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 6.8e-99 365.2 410 53.7
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 1.5e-98 364.0 425 53.4
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 3.7e-97 359.4 412 54.1
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 3.7e-97 359.4 371 54.7
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 5.6e-93 345.5 415 50.8
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 1.8e-91 340.5 410 51.0
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 3.4e-90 336.3 414 50.2
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 4.4e-90 335.9 429 50.3
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 4.4e-90 335.9 419 51.6
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 1.7e-89 334.0 431 50.6
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 1.2e-87 327.8 441 48.8
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 6.0e-87 325.5 416 49.0
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 7.8e-87 325.1 421 48.0
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 1.0e-86 324.7 450 46.0
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 1.7e-86 323.9 405 49.6
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 2.3e-86 323.6 363 53.7
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 5.1e-86 322.4 407 49.6
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 1.5e-85 320.9 417 49.9
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 5.6e-85 318.9 415 48.9
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 5.6e-85 318.9 419 48.9
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 1.6e-84 317.4 416 48.8
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 6.8e-83 312.0 416 49.0
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 6.8e-83 312.0 426 47.2
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 8.9e-83 311.6 407 49.9
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 1.2e-82 311.2 415 46.0
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 2.0e-82 310.5 418 46.9
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 2.6e-82 310.1 408 46.8
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 1.0e-78 298.1 410 47.8
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 1.3e-78 297.7 343 52.8
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 2.3e-78 297.0 424 46.7
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 2.3e-78 297.0 275 60.4
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 3.0e-78 296.6 413 43.8
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 3.0e-78 296.6 405 45.2
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 1.5e-77 294.3 424 44.6
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 1.9e-77 293.9 402 46.3
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 2.5e-77 293.5 408 44.9
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 2.5e-77 293.5 368 50.0
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 4.3e-77 292.7 425 43.8
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 2.1e-76 290.4 437 45.3
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 4.7e-76 289.3 420 44.8
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 8.1e-76 288.5 250 60.4
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 1.4e-75 287.7 250 59.6
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 2.4e-75 287.0 413 42.9
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 6.8e-75 285.4 407 44.2
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 8.9e-75 285.0 413 42.9
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 3.4e-74 283.1 405 45.2
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 4.4e-74 282.7 250 59.6
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 5.8e-74 282.3 411 46.2
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 9.9e-74 281.6 384 47.1
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 1.7e-73 280.8 373 45.8
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 4.9e-73 279.3 418 45.0
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 1.4e-72 277.7 258 58.1
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 1.4e-72 277.7 358 49.4
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 1.9e-72 277.3 219 64.8
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 7.1e-72 275.4 434 43.3
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 7.1e-72 275.4 375 46.7
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 1.6e-71 274.2 420 44.5
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 2.7e-71 273.5 408 41.9
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 6.0e-71 272.3 221 65.6
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 1.0e-70 271.6 252 57.9
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 2.3e-70 270.4 256 60.9
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 1.6e-68 264.2 380 43.9
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 3.6e-68 263.1 273 54.2
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 1.5e-66 257.7 256 57.0
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 4.4e-66 256.1 395 42.8
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 5.8e-66 255.8 405 40.0
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 9.9e-66 255.0 250 55.6
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.3e-65 254.6 252 59.1
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 6.4e-65 252.3 249 53.4
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 3.2e-64 250.0 277 51.3
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 3.2e-64 250.0 286 50.0
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 3.5e-63 246.5 248 54.0
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 1.7e-62 244.2 444 40.5
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 1.5e-61 241.1 248 52.0
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 8.1e-60 235.3 414 39.4
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 1.2e-58 231.5 409 39.9
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 9.9e-58 228.4 185 65.4
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 6.4e-57 225.7 247 51.8
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 1.4e-56 224.6 248 50.8
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 1.4e-56 224.6 248 50.8
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 1.4e-56 224.6 248 50.8
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 3.2e-56 223.4 253 50.6
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 7.1e-56 222.2 413 39.5
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 7.1e-56 222.2 189 61.4
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 1.2e-55 221.5 253 49.8
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 1.3e-54 218.0 264 49.2
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 1.5e-53 214.5 267 47.9
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 1.9e-53 214.2 410 37.8
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 7.4e-53 212.2 449 37.6
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 9.6e-53 211.8 229 53.7
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 3.1e-51 206.8 183 59.6
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 7.6e-50 202.2 425 38.1
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 1.0e-49 201.8 273 44.0
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 1.3e-49 201.4 276 43.8
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 3.2e-48 196.8 214 51.4
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 9.3e-48 195.3 271 45.8
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 1.8e-46 191.0 276 42.8
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 2.3e-46 190.7 260 45.8
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 2.3e-46 190.7 423 34.8
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 3.9e-46 189.9 394 36.0
COL.COLO4_09627 Corchorus olitorius HOM05D004411 ORTHO05D005569 8.7e-46 188.7 299 44.5
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 2.5e-45 187.2 270 44.1
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 5.7e-45 186.0 270 44.8
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 5.7e-45 186.0 242 45.0
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 4.8e-44 183.0 193 53.9
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 3.1e-43 180.3 279 40.9
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 2.2e-41 174.1 406 36.2
Ah.06g195930 Amaranthus hybridus HOM05D004411 ORTHO05D005569 4.8e-36 156.4 297 39.7
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 3.1e-35 153.7 384 34.6
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 3.4e-34 150.2 260 40.8
PSO339G6638 Papaver somniferum HOM05D004411 ORTHO05D005569 8.5e-33 145.6 171 46.8
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 1.0e-30 138.7 184 44.6
Glyma.09G101400 Glycine max HOM05D004411 ORTHO05D005569 1.3e-28 131.7 136 52.2
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 8.2e-28 129.0 95 72.6
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 9.1e-27 125.6 115 60.0
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 1.5e-26 124.8 123 53.7
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 5.9e-26 122.9 118 60.2
VMungo1383G3213 Vigna mungo HOM05D004411 ORTHO05D005569 5.9e-26 122.9 116 53.4
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 1.0e-25 122.1 86 70.9
VMungo0540G0671 Vigna mungo HOM05D004411 ORTHO05D005569 2.9e-25 120.6 116 51.7
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 6.1e-23 112.8 82 67.1
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 3.7e-20 103.6 124 48.4
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 3.7e-20 103.6 124 48.4
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 4.8e-20 103.2 214 34.6
EL10Ac9g22233 Beta vulgaris HOM05D004411 ORTHO05D005569 2.6e-18 97.4 264 33.0
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 1.0e-17 95.5 87 59.8
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 1.7e-17 94.7 85 58.8
PGSC0003DMG400013925 Solanum tuberosum HOM05D004411 ORTHO05D005569 3.2e-16 90.5 50 88.0
Mapoly0160s0028 Marchantia polymorpha HOM05D004411 ORTHO05D005569 1.4e-14 85.1 263 29.3
SMO367G0149 Selaginella moellendorffii HOM05D004411 ORTHO05D005569 5.7e-13 79.7 207 32.9
GSVIVG01036883001 Vitis vinifera HOM05D004411 ORTHO05D005569 3.7e-12 77.0 55 61.8
Haze_07158 Corylus avellana HOM05D004411 ORTHO05D005569 5.3e-11 73.2 68 54.4
AagrBONN_evm.TU.Sc2ySwM_344.3992 Anthoceros agrestis HOM05D004411 ORTHO05D005569 1.3e-09 68.6 113 36.3
arahy.Tifrunner.gnm1.ann1.ZM7UYF Arachis hypogaea HOM05D004411 ORTHO05D005569 2.9e-09 67.4 99 42.4
Lalb_Chr15g0080381 Lupinus albus HOM05D004411 ORTHO05D005569 2.9e-09 67.4 69 43.5
arahy.Tifrunner.gnm1.ann1.H97TV8 Arachis hypogaea HOM05D004411 ORTHO05D005569 2.1e-07 61.2 84 41.7
CBR_g6715 Chara braunii HOM05D004411 ORTHO05D005569 2.3e-06 57.8 168 31.5


User provided reference genes

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