Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009440g0020 Nicotiana tabacum HOM05D004816 ORTHO05D006043 8.9e-274 946.4 514 100.0
PGSC0003DMG400006219 Solanum tuberosum HOM05D004816 ORTHO05D006043 1.2e-222 776.5 511 82.8
Peaxi162Scf00003g02043 Petunia axillaris HOM05D004816 ORTHO05D006043 1.9e-215 752.7 513 82.3
PGSC0003DMG402025925 Solanum tuberosum HOM05D004816 ORTHO05D006043 1.1e-186 657.1 527 72.1
Sopen01g051090 Solanum pennellii HOM05D004816 ORTHO05D006043 2.4e-186 656.0 521 72.7
Solyc01g108890.3 Solanum lycopersicum HOM05D004816 ORTHO05D006043 5.9e-185 651.4 527 71.3
Nitab4.5_0001401g0100 Nicotiana tabacum HOM05D004816 ORTHO05D006043 1.7e-179 633.3 412 81.6
Nitab4.5_0013034g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 1.2e-177 627.1 467 74.9
Dinv23600 Davidia involucrata HOM05D004816 ORTHO05D006043 2.0e-172 609.8 485 69.1
CSS0036891 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 4.6e-169 598.6 486 68.3
Cfa004941 Carpinus fangiana HOM05D004816 ORTHO05D006043 3.7e-163 578.9 486 66.5
GSVIVG01031842001 Vitis vinifera HOM05D004816 ORTHO05D006043 7.1e-162 574.7 486 65.8
CAN.G322.72 Capsicum annuum HOM05D004816 ORTHO05D006043 9.2e-162 574.3 391 78.3
QL11p039002 Quercus lobata HOM05D004816 ORTHO05D006043 3.9e-160 568.9 506 64.0
QL11p040287 Quercus lobata HOM05D004816 ORTHO05D006043 1.9e-159 566.6 506 64.0
Actinidia17843 Actinidia chinensis HOM05D004816 ORTHO05D006043 2.5e-159 566.2 476 66.2
MSTRG.20129 Avicennia marina HOM05D004816 ORTHO05D006043 2.1e-158 563.1 526 61.0
Duzib248G0025 Durio zibethinus HOM05D004816 ORTHO05D006043 2.8e-158 562.8 477 65.2
Rhsim05G0079600 Rhododendron simsii HOM05D004816 ORTHO05D006043 3.6e-158 562.4 506 63.0
SGA_v2.0_scaffold58G20600 Striga asiatica HOM05D004816 ORTHO05D006043 1.8e-157 560.1 526 62.0
CiPaw.06G139500 Carya illinoinensis HOM05D004816 ORTHO05D006043 2.4e-157 559.7 467 65.7
Lj5A205G67 Lonicera japonica HOM05D004816 ORTHO05D006043 3.1e-157 559.3 485 62.7
Actinidia27933 Actinidia chinensis HOM05D004816 ORTHO05D006043 3.8e-155 552.4 474 65.0
Atru.chr5.2842 Acer truncatum HOM05D004816 ORTHO05D006043 8.4e-155 551.2 482 64.7
SalBow6G5269 Salvia bowleyana HOM05D004816 ORTHO05D006043 8.4e-155 551.2 529 62.2
Thecc.02G094000 Theobroma cacao HOM05D004816 ORTHO05D006043 5.4e-154 548.5 484 63.4
Potri.009G107800 Populus trichocarpa HOM05D004816 ORTHO05D006043 1.6e-153 547.0 470 64.5
Migut.B00299 Erythranthe guttata HOM05D004816 ORTHO05D006043 2.1e-153 546.6 520 61.5
Manes.17G095600 Manihot esculenta HOM05D004816 ORTHO05D006043 1.1e-151 540.8 488 62.1
Nn6g32127 Nelumbo nucifera HOM05D004816 ORTHO05D006043 2.5e-151 539.7 517 59.8
TAR625G0829 Trochodendron aralioides HOM05D004816 ORTHO05D006043 1.3e-150 537.3 484 62.6
MSTRG.16772 Avicennia marina HOM05D004816 ORTHO05D006043 1.8e-149 533.5 477 62.9
Lalb_Chr10g0095411 Lupinus albus HOM05D004816 ORTHO05D006043 1.8e-149 533.5 506 60.9
TWI31G1354 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 6.9e-149 531.6 525 58.5
Duzib132G0866 Durio zibethinus HOM05D004816 ORTHO05D006043 1.2e-148 530.8 479 62.2
COL.COLO4_11733 Corchorus olitorius HOM05D004816 ORTHO05D006043 1.5e-148 530.4 476 62.6
vmacro19471 Vaccinium macrocarpon HOM05D004816 ORTHO05D006043 1.5e-148 530.4 488 61.5
FvH4_2g07090 Fragaria vesca HOM05D004816 ORTHO05D006043 2.0e-148 530.0 420 68.1
arahy.Tifrunner.gnm1.ann1.D5RGK8 Arachis hypogaea HOM05D004816 ORTHO05D006043 9.9e-148 527.7 526 59.3
Cc02_g18320 Coffea canephora HOM05D004816 ORTHO05D006043 9.9e-148 527.7 390 70.5
MD10G1088000 Malus domestica HOM05D004816 ORTHO05D006043 1.3e-147 527.3 520 59.6
Nitab4.5_0005466g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 1.3e-147 527.3 347 85.6
arahy.Tifrunner.gnm1.ann1.WD2X18 Arachis hypogaea HOM05D004816 ORTHO05D006043 1.7e-147 526.9 526 59.1
MD05G1073700 Malus domestica HOM05D004816 ORTHO05D006043 6.4e-147 525.0 520 58.7
PSO675G8525 Papaver somniferum HOM05D004816 ORTHO05D006043 8.4e-147 524.6 482 61.0
Glyma.20G009200 Glycine max HOM05D004816 ORTHO05D006043 1.1e-146 524.2 532 57.5
Medtr1g034170 Medicago truncatula HOM05D004816 ORTHO05D006043 1.9e-146 523.5 487 61.0
Aqoxy6G00919 Aquilegia oxysepala HOM05D004816 ORTHO05D006043 3.2e-146 522.7 484 61.2
Ca_12466_v3 Cicer arietinum L. HOM05D004816 ORTHO05D006043 3.2e-146 522.7 532 58.6
Gohir.D12G026300 Gossypium hirsutum HOM05D004816 ORTHO05D006043 3.2e-146 522.7 526 58.4
Gorai.008G026600 Gossypium raimondii HOM05D004816 ORTHO05D006043 7.1e-146 521.5 526 58.2
Eucgr.I01207 Eucalyptus grandis HOM05D004816 ORTHO05D006043 9.3e-146 521.2 415 66.5
PSO541G0848 Papaver somniferum HOM05D004816 ORTHO05D006043 2.1e-145 520.0 482 61.2
CANSAT25G1860 Cannabis sativa HOM05D004816 ORTHO05D006043 1.7e-144 516.9 489 61.1
Gohir.A12G026800 Gossypium hirsutum HOM05D004816 ORTHO05D006043 2.3e-144 516.5 463 62.9
Phvul.003G011700 Phaseolus vulgaris HOM05D004816 ORTHO05D006043 1.1e-143 514.2 533 56.3
Haze_02469 Corylus avellana HOM05D004816 ORTHO05D006043 5.6e-143 511.9 572 54.7
PGR142G0866 Punica granatum HOM05D004816 ORTHO05D006043 1.6e-142 510.4 436 64.4
Sabra09G0082300 Salix brachista HOM05D004816 ORTHO05D006043 1.1e-141 507.7 488 59.6
MBI16_g31473_MAGBIO Magnolia biondii HOM05D004816 ORTHO05D006043 2.4e-141 506.5 532 56.2
Psat6g096400 Pisum sativum HOM05D004816 ORTHO05D006043 2.0e-140 503.4 530 56.4
MELO3C018421.2 Cucumis melo HOM05D004816 ORTHO05D006043 2.6e-140 503.1 469 59.7
Ciclev10028431m.g Citrus clementina HOM05D004816 ORTHO05D006043 3.4e-140 502.7 460 61.5
TPR.G18619 Trifolium pratense HOM05D004816 ORTHO05D006043 4.9e-139 498.8 477 61.0
DCAR_022069 Daucus carota HOM05D004816 ORTHO05D006043 2.4e-138 496.5 453 62.7
BcaC01g03051 Brassica carinata HOM05D004816 ORTHO05D006043 7.1e-138 495.0 512 56.4
C03p56660 Brassica napus HOM05D004816 ORTHO05D006043 7.1e-138 495.0 512 56.4
FAN15G1865 Fragaria x ananassa HOM05D004816 ORTHO05D006043 1.6e-137 493.8 417 64.5
AL3G47650 Arabidopsis lyrata HOM05D004816 ORTHO05D006043 2.1e-137 493.4 525 55.8
FAN27G2465 Fragaria x ananassa HOM05D004816 ORTHO05D006043 2.7e-137 493.0 417 64.7
ClCG02G005580 Citrullus lanatus HOM05D004816 ORTHO05D006043 4.6e-137 492.3 533 55.7
Sed0008645 Sechium edule HOM05D004816 ORTHO05D006043 1.3e-136 490.7 525 55.6
BolC3t17950H Brassica oleracea HOM05D004816 ORTHO05D006043 1.8e-136 490.3 527 55.0
Glyma.07G180000 Glycine max HOM05D004816 ORTHO05D006043 1.5e-135 487.3 530 55.1
AT2G15860 Arabidopsis thaliana HOM05D004816 ORTHO05D006043 2.5e-135 486.5 527 54.8
CsaV3_7G010070 Cucumis sativus L. HOM05D004816 ORTHO05D006043 9.6e-135 484.6 524 56.5
Sp3g29160 Schrenkiella parvula HOM05D004816 ORTHO05D006043 9.6e-135 484.6 538 54.3
A03p45610 Brassica napus HOM05D004816 ORTHO05D006043 2.1e-134 483.4 529 54.3
BcaB08g34612 Brassica carinata HOM05D004816 ORTHO05D006043 2.8e-134 483.0 533 54.8
BraA03t13693Z Brassica rapa HOM05D004816 ORTHO05D006043 6.2e-134 481.9 542 53.5
THA.LOC104819592 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 8.1e-134 481.5 478 58.8
Carub.0003s2975 Capsella rubella HOM05D004816 ORTHO05D006043 1.4e-133 480.7 526 54.6
VMungo1215G1045 Vigna mungo HOM05D004816 ORTHO05D006043 2.4e-133 479.9 533 54.0
ATR0733G051 Amborella trichopoda HOM05D004816 ORTHO05D006043 1.2e-132 477.6 414 60.9
CARHR106200 Cardamine hirsuta HOM05D004816 ORTHO05D006043 1.2e-132 477.6 485 56.1
Aa31LG8G13390 Aethionema arabicum HOM05D004816 ORTHO05D006043 3.4e-132 476.1 523 54.7
AUR62016646 Chenopodium quinoa HOM05D004816 ORTHO05D006043 7.6e-132 474.9 518 54.4
AUR62011413 Chenopodium quinoa HOM05D004816 ORTHO05D006043 3.8e-131 472.6 475 56.6
BraA07t28285Z Brassica rapa HOM05D004816 ORTHO05D006043 4.9e-131 472.2 544 53.1
C07p07890 Brassica napus HOM05D004816 ORTHO05D006043 3.2e-130 469.5 537 53.1
BolC7t41207H Brassica oleracea HOM05D004816 ORTHO05D006043 3.2e-130 469.5 537 53.1
BcaC06g36093 Brassica carinata HOM05D004816 ORTHO05D006043 4.2e-130 469.2 532 53.4
Thhalv10022638m.g Eutrema salsugineum HOM05D004816 ORTHO05D006043 4.2e-130 469.2 543 52.3
THA.LOC104807346 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 2.1e-129 466.8 542 53.1
Hund06195 Selenicereus undatus HOM05D004816 ORTHO05D006043 6.0e-129 465.3 421 60.3
BcaB03g16336 Brassica carinata HOM05D004816 ORTHO05D006043 1.3e-128 464.2 522 53.6
HanXRQChr10g0303411 Helianthus annuus HOM05D004816 ORTHO05D006043 7.4e-127 458.4 488 55.9
HPP92_019907 Vanilla planifolia HOM05D004816 ORTHO05D006043 1.1e-125 454.5 472 52.8
Os03g0737900 Oryza sativa ssp. japonica HOM05D004816 ORTHO05D006043 7.6e-124 448.4 460 55.0
ECA234G4099 Erigeron canadensis HOM05D004816 ORTHO05D006043 1.3e-123 447.6 412 60.4
Haze_02467 Corylus avellana HOM05D004816 ORTHO05D006043 1.7e-123 447.2 427 59.0
EL10Ac9g21805 Beta vulgaris HOM05D004816 ORTHO05D006043 1.1e-122 444.5 481 53.8
Lsat_1_v5_gn_5_117600 Lactuca sativa HOM05D004816 ORTHO05D006043 1.9e-122 443.7 410 60.0
Zm00001eb056520 Zea mays HOM05D004816 ORTHO05D006043 2.5e-122 443.4 451 55.2
A07p04930 Brassica napus HOM05D004816 ORTHO05D006043 5.5e-122 442.2 392 60.7
FAN24G2332 Fragaria x ananassa HOM05D004816 ORTHO05D006043 1.2e-121 441.0 411 60.3
Lj2g0017153 Lotus japonicus HOM05D004816 ORTHO05D001172 3.4e-116 422.9 397 58.9
TAR381G0713 Trochodendron aralioides HOM05D004816 ORTHO05D006043 4.6e-113 412.5 380 61.3
CDE06G1012 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 5.7e-111 405.6 381 56.7
QL06p000730 Quercus lobata HOM05D004816 ORTHO05D006043 5.7e-111 405.6 397 59.2
Prupe.8G114000 Prunus persica HOM05D004816 ORTHO05D006043 4.8e-110 402.5 484 51.9
unitig_21.g20758 Utricularia gibba HOM05D004816 ORTHO05D006043 4.7e-105 386.0 511 46.8
Cpa.g.sc62.70 Carica papaya HOM05D004816 ORTHO05D006043 8.8e-104 381.7 373 58.4
CDE04G3783 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 9.4e-98 361.7 315 59.0
Mapoly0087s0083 Marchantia polymorpha HOM05D004816 ORTHO05D006043 2.8e-94 350.1 495 44.8
QL08p015067 Quercus lobata HOM05D004816 ORTHO05D000106 9.4e-90 335.1 277 65.0
QL08p015136 Quercus lobata HOM05D004816 ORTHO05D000106 9.4e-90 335.1 277 65.0
Pp3c4_2830 Physcomitrium patens HOM05D004816 ORTHO05D006043 1.3e-86 324.7 534 40.8
Oeu021929.4 Olea europaea HOM05D004816 ORTHO05D006043 8.5e-83 312.0 307 56.7
SEGI_09196 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 4.2e-82 309.7 290 52.8
SMO347G0163 Selaginella moellendorffii HOM05D004816 ORTHO05D006043 2.2e-78 297.4 482 39.6
RcHm_v2.0_Chr6g0259581 Rosa chinensis HOM05D004816 ORTHO05D006043 1.8e-77 294.3 276 62.7
CSS0007305 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 5.4e-77 292.7 367 51.2
Sc08g0000210 Simmondsia chinensis HOM05D004816 ORTHO05D006043 4.0e-72 276.6 232 60.8
AagrBONN_evm.TU.Sc2ySwM_228.2260 Anthoceros agrestis HOM05D004816 ORTHO05D006043 9.2e-69 265.4 447 38.9
Nitab4.5_0000876g0230 Nicotiana tabacum HOM05D000224 ORTHO05D000337 2.8e-65 253.8 157 87.3
CSS0019035 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 6.8e-64 249.2 306 51.6
SHI18146 Sapria himalayana HOM05D004816 ORTHO05D006043 8.9e-64 248.8 634 33.6
RcHm_v2.0_Chr6g0259571 Rosa chinensis HOM05D004816 ORTHO05D006043 5.2e-56 223.0 176 67.0
Dinv42115 Davidia involucrata HOM05D004816 ORTHO05D000337 8.1e-49 199.1 479 35.5
Manes.15G144501 Manihot esculenta HOM05D004816 ORTHO05D006043 4.1e-45 186.8 228 54.4
Sc08g0000220 Simmondsia chinensis HOM05D004816 ORTHO05D006043 2.8e-41 174.1 166 58.4
Cpa.g.sc62.69 Carica papaya HOM05D004816 ORTHO05D006043 9.3e-37 159.1 144 61.8
TWI79G0508 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 1.1e-29 135.6 105 68.6
Oeu057669.2 Olea europaea HOM05D004816 ORTHO05D006043 1.0e-27 129.0 199 50.3
Lsat_1_v5_gn_4_68061 Lactuca sativa HOM05D004816 ORTHO05D006043 4.8e-25 120.2 164 47.6
Atru.chr13.510 Acer truncatum HOM05D004816 ORTHO05D006043 2.4e-21 107.8 105 59.0
Atru.chr8.2607 Acer truncatum HOM05D004816 ORTHO05D006043 2.4e-21 107.8 105 59.0
Gohir.A01G005566 Gossypium hirsutum HOM05D004816 ORTHO05D006043 4.3e-18 97.1 126 46.0
SEGI_20581 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 6.9e-16 89.7 124 47.6
arahy.Tifrunner.gnm1.ann1.MV8GC5 Arachis hypogaea HOM05D004816 ORTHO05D006043 9.0e-16 89.4 111 52.3
DCAR_015855 Daucus carota HOM05D004816 ORTHO05D006043 1.5e-15 88.6 108 51.9
Lsat_1_v5_gn_4_111080 Lactuca sativa HOM05D004816 ORTHO05D006043 1.5e-15 88.6 200 36.0
CSS0032400 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 1.3e-14 85.5 161 38.5
Sopen01g051070 Solanum pennellii HOM05D004816 ORTHO05D006043 1.9e-13 81.6 69 66.7
Atru.chr8.2606 Acer truncatum HOM05D004816 ORTHO05D006043 3.2e-13 80.9 57 66.7
Actinidia00469 Actinidia chinensis HOM05D004816 ORTHO05D006043 3.2e-13 80.9 75 64.0
Psat0s2233g0240 Pisum sativum HOM05D004816 ORTHO05D006043 1.8e-11 75.1 106 38.7
Duzib052G0890 Durio zibethinus HOM05D004816 ORTHO05D006043 5.1e-11 73.6 70 64.3
arahy.Tifrunner.gnm1.ann1.JF64TB Arachis hypogaea HOM05D004816 ORTHO05D006043 1.1e-10 72.4 110 49.1
CSS0009254 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 1.9e-10 71.6 177 33.9
CSS0045496 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 4.8e-09 67.0 160 34.4
CSS0012251 Camellia sinensis var. sinensis HOM05D000224 ORTHO05D006043 4.1e-08 63.9 138 41.3
CSS0049387 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 5.9e-07 60.1 77 50.6


User provided reference genes

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