Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009436g0040 Nicotiana tabacum HOM05D002335 ORTHO05D006282 3.4e-206 721.5 378 100.0
Peaxi162Scf00928g00036 Petunia axillaris HOM05D002335 ORTHO05D006282 7.6e-105 384.8 407 58.2
Sopen12g004050 Solanum pennellii HOM05D002335 ORTHO05D006282 6.0e-102 375.2 409 57.5
Solyc12g009100.2 Solanum lycopersicum HOM05D002335 ORTHO05D006282 1.0e-101 374.4 409 57.2
Hma1.2p1_0169F.1_g074510 Hydrangea macrophylla HOM05D002335 ORTHO05D006282 8.2e-99 364.8 404 56.2
Cfa002987 Carpinus fangiana HOM05D002335 ORTHO05D006282 2.0e-97 360.1 408 55.1
Ciclev10008755m.g Citrus clementina HOM05D002335 ORTHO05D006282 5.5e-95 352.1 409 54.3
CiPaw.04G143000 Carya illinoinensis HOM05D002335 ORTHO05D006282 1.2e-94 350.9 409 53.1
VMungo1309G0226 Vigna mungo HOM05D002335 ORTHO05D006282 1.1e-92 344.4 410 52.4
Migut.J00924 Erythranthe guttata HOM05D002335 ORTHO05D006282 3.3e-92 342.8 406 55.4
CAN.G1661.12 Capsicum annuum HOM05D002335 ORTHO05D006282 2.8e-91 339.7 392 55.9
Gorai.013G224300 Gossypium raimondii HOM05D002335 ORTHO05D006282 2.8e-91 339.7 407 51.8
FvH4_1g08690 Fragaria vesca HOM05D002335 ORTHO05D006282 4.8e-91 339.0 405 53.6
Gohir.D13G196375 Gossypium hirsutum HOM05D002335 ORTHO05D006282 4.8e-91 339.0 406 52.5
Glyma.15G177700 Glycine max HOM05D002335 ORTHO05D006282 6.3e-91 338.6 408 52.5
Potri.018G056500 Populus trichocarpa HOM05D002335 ORTHO05D006282 6.3e-91 338.6 411 52.1
Nitab4.5_0011754g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006282 4.1e-90 335.9 428 52.8
Phvul.009G227200 Phaseolus vulgaris HOM05D002335 ORTHO05D006282 5.3e-90 335.5 404 52.0
Dinv42395 Davidia involucrata HOM05D002335 ORTHO05D006282 6.9e-90 335.1 409 53.3
TPR.G27760 Trifolium pratense HOM05D002335 ORTHO05D006282 5.9e-89 332.0 410 51.0
Gohir.A13G190800 Gossypium hirsutum HOM05D002335 ORTHO05D006282 7.7e-89 331.6 408 51.7
Dinv25558 Davidia involucrata HOM05D002335 ORTHO05D006282 1.0e-88 331.3 405 53.3
Sopen07g021360 Solanum pennellii HOM05D002335 ORTHO05D006282 1.0e-88 331.3 413 53.8
BcaB06g26879 Brassica carinata HOM05D002335 ORTHO05D006282 6.5e-88 328.6 402 52.5
Glyma.09G069700 Glycine max HOM05D002335 ORTHO05D006282 1.1e-87 327.8 410 51.7
ClCG03G015070 Citrullus lanatus HOM05D002335 ORTHO05D006282 1.4e-87 327.4 411 50.4
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 1.9e-87 327.0 402 52.0
PSO135G0390 Papaver somniferum HOM05D002335 ORTHO05D006282 1.9e-87 327.0 409 50.1
Aa31sc133G10 Aethionema arabicum HOM05D002335 ORTHO05D006282 5.5e-87 325.5 402 51.5
EL10Ac8g19056 Beta vulgaris HOM05D002335 ORTHO05D006282 5.5e-87 325.5 433 48.3
HanXRQChr04g0126011 Helianthus annuus HOM05D002335 ORTHO05D006282 1.2e-86 324.3 411 49.1
PSO724G0129 Papaver somniferum HOM05D002335 ORTHO05D006282 2.1e-86 323.6 409 49.4
Sed0016034 Sechium edule HOM05D002335 ORTHO05D006282 2.1e-86 323.6 409 50.4
THA.LOC104815334 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 2.7e-86 323.2 402 50.7
BcaC06g35950 Brassica carinata HOM05D002335 ORTHO05D006282 4.6e-86 322.4 402 51.7
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 4.6e-86 322.4 402 51.7
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 4.6e-86 322.4 402 51.7
GSVIVG01015081001 Vitis vinifera HOM05D002335 ORTHO05D006282 6.1e-86 322.0 411 51.6
Lj6g0009960 Lotus japonicus HOM05D002335 ORTHO05D006282 7.9e-86 321.6 410 50.5
AUR62028934 Chenopodium quinoa HOM05D002335 ORTHO05D006282 1.4e-85 320.9 405 49.4
ECA236G4601 Erigeron canadensis HOM05D002335 ORTHO05D006282 1.8e-85 320.5 411 48.9
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 1.1e-84 317.8 418 50.2
CSS0005090 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006282 1.5e-84 317.4 409 51.1
Manes.16G095200 Manihot esculenta HOM05D002335 ORTHO05D006282 4.4e-84 315.8 405 50.9
Nitab4.5_0000073g0170 Nicotiana tabacum HOM05D002335 ORTHO05D006282 3.7e-83 312.8 455 47.3
Nn8g38636 Nelumbo nucifera HOM05D002335 ORTHO05D006282 8.2e-83 311.6 406 50.0
TWI34G0307 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 3.1e-82 309.7 413 50.1
TAR383G0969 Trochodendron aralioides HOM05D002335 ORTHO05D006282 6.9e-82 308.5 409 49.9
Sabra18G0052300 Salix brachista HOM05D002335 ORTHO05D006282 1.2e-81 307.8 490 44.1
THA.LOC104799620 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 2.6e-81 306.6 405 49.1
Thhalv10014003m.g Eutrema salsugineum HOM05D002335 ORTHO05D006282 5.9e-81 305.4 409 47.7
BraA03t10325Z Brassica rapa HOM05D002335 ORTHO05D006282 1.3e-80 304.3 409 47.4
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 1.7e-80 303.9 409 47.4
Lsat_1_v5_gn_8_86481 Lactuca sativa HOM05D002335 ORTHO05D006282 1.7e-80 303.9 409 47.2
Sp6g23900 Schrenkiella parvula HOM05D002335 ORTHO05D006282 1.7e-80 303.9 409 47.4
Cc06_g12190 Coffea canephora HOM05D002335 ORTHO05D006282 2.9e-80 303.1 409 50.1
Duzib187G0696 Durio zibethinus HOM05D002335 ORTHO05D006282 2.9e-80 303.1 408 49.0
MBI19_g16223_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006282 6.5e-80 302.0 405 48.9
Thecc.09G076700 Theobroma cacao HOM05D002335 ORTHO05D006282 8.5e-80 301.6 408 49.0
AL6G32120 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 1.1e-79 301.2 408 47.5
Haze_26014 Corylus avellana HOM05D002335 ORTHO05D006282 1.1e-79 301.2 446 47.3
Carub.0006s1891 Capsella rubella HOM05D002335 ORTHO05D006282 1.4e-79 300.8 408 47.5
Eucgr.C03328 Eucalyptus grandis HOM05D002335 ORTHO05D006282 1.4e-79 300.8 403 49.1
Aqoxy7G04129 Aquilegia oxysepala HOM05D002335 ORTHO05D006282 7.2e-79 298.5 406 49.0
AUR62025250 Chenopodium quinoa HOM05D002335 ORTHO05D006282 1.2e-78 297.7 409 47.4
AT5G20580 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 1.6e-78 297.4 408 47.1
MD02G1091400 Malus domestica HOM05D002335 ORTHO05D006282 1.6e-78 297.4 409 48.9
Prupe.7G198700 Prunus persica HOM05D002335 ORTHO05D006282 2.1e-78 297.0 388 50.0
Sp3g24570 Schrenkiella parvula HOM05D002335 ORTHO05D006282 2.7e-78 296.6 402 49.5
Ca_02205_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006282 4.7e-78 295.8 410 48.0
Carub.0003s2712 Capsella rubella HOM05D002335 ORTHO05D006282 6.1e-78 295.4 412 49.5
Manes.03G040500 Manihot esculenta HOM05D002335 ORTHO05D006282 1.4e-77 294.3 399 49.1
Eucgr.C03263 Eucalyptus grandis HOM05D002335 ORTHO05D006282 3.9e-77 292.7 395 48.9
AL3G43580 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 6.7e-77 292.0 402 49.5
SalBow6G4624 Salvia bowleyana HOM05D002335 ORTHO05D006282 8.8e-77 291.6 373 52.0
Hund26035 Selenicereus undatus HOM05D002335 ORTHO05D006282 1.1e-76 291.2 377 49.1
MSTRG.19458 Avicennia marina HOM05D002335 ORTHO05D006282 1.3e-75 287.7 406 48.5
Actinidia29935 Actinidia chinensis HOM05D002335 ORTHO05D006282 1.7e-75 287.3 401 49.4
Duzib168G0796 Durio zibethinus HOM05D002335 ORTHO05D006282 2.2e-75 287.0 411 46.5
Medtr2g041690 Medicago truncatula HOM05D002335 ORTHO05D006282 3.7e-75 286.2 410 46.3
RcHm_v2.0_Chr2g0095141 Rosa chinensis HOM05D002335 ORTHO05D006282 4.8e-75 285.8 406 47.5
ATR0598G025 Amborella trichopoda HOM05D002335 ORTHO05D006282 6.3e-75 285.4 410 44.9
COL.COLO4_18096 Corchorus olitorius HOM05D002335 ORTHO05D006282 1.4e-74 284.3 407 47.7
FAN28G1803 Fragaria x ananassa HOM05D002335 ORTHO05D006282 5.3e-74 282.3 405 47.7
Zm00001eb256890 Zea mays HOM05D002335 ORTHO05D006282 2.0e-73 280.4 398 45.5
CANSAT56G2952 Cannabis sativa HOM05D002335 ORTHO05D006282 4.5e-73 279.3 423 46.6
CAN.G404.48 Capsicum annuum HOM05D002335 ORTHO05D006282 1.7e-72 277.3 364 50.8
SGA_v2.0_scaffold308G48076 Striga asiatica HOM05D002335 ORTHO05D006282 1.7e-72 277.3 397 49.1
PGR044G1875 Punica granatum HOM05D002335 ORTHO05D006282 8.5e-72 275.0 372 48.4
CsaV3_1G041060 Cucumis sativus L. HOM05D002335 ORTHO05D006282 4.2e-71 272.7 411 45.7
MELO3C015522.2 Cucumis melo HOM05D002335 ORTHO05D006282 9.4e-71 271.6 411 45.5
HPP92_004364 Vanilla planifolia HOM05D002335 ORTHO05D006282 4.7e-70 269.2 408 43.9
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 2.0e-68 263.8 377 46.2
MD15G1217700 Malus domestica HOM05D002335 ORTHO05D006282 4.4e-68 262.7 385 46.8
CARHR192220 Cardamine hirsuta HOM05D002335 ORTHO05D006282 4.8e-67 259.2 374 46.3
Nitab4.5_0000343g0220 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.8e-66 257.3 145 93.8
QL11p000781 Quercus lobata HOM05D002335 ORTHO05D006282 6.5e-64 248.8 435 43.9
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 1.5e-63 247.7 405 44.2
CARHR103630 Cardamine hirsuta HOM05D002335 ORTHO05D006282 1.6e-62 244.2 380 47.6
Psat1g134320 Pisum sativum HOM05D002335 ORTHO05D006282 1.8e-61 240.7 346 47.1
vmacro06343 Vaccinium macrocarpon HOM05D002335 ORTHO05D006282 5.2e-61 239.2 439 42.6
AT2G06005 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 6.8e-61 238.8 367 46.9
Aa31LG1G14100 Aethionema arabicum HOM05D002335 ORTHO05D006282 8.3e-59 231.9 434 40.3
FAN26G1551 Fragaria x ananassa HOM05D002335 ORTHO05D006282 2.4e-58 230.3 364 47.0
arahy.Tifrunner.gnm1.ann1.UHGN3W Arachis hypogaea HOM05D002335 ORTHO05D006282 1.2e-57 228.0 388 42.5
Atru.chr7.1708 Acer truncatum HOM05D002335 ORTHO05D006282 2.0e-57 227.3 347 45.5
Rhsim03G0227400 Rhododendron simsii HOM05D002335 ORTHO05D005129 1.3e-56 224.6 411 42.3
Peaxi162Scf00127g01814 Petunia axillaris HOM05D002335 ORTHO05D006282 3.8e-56 223.0 357 47.9
SEGI_06962 Sequoiadendron giganteum HOM05D002335 ORTHO05D006282 4.2e-55 219.5 411 37.5
Lj7C687T14 Lonicera japonica HOM05D002335 ORTHO05D006282 9.5e-55 218.4 302 50.3
TWI63G1279 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 2.8e-54 216.9 409 41.3
Cpa.g.sc28.33 Carica papaya HOM05D002335 ORTHO05D006282 1.0e-53 214.9 291 47.8
Psat3g025000 Pisum sativum HOM05D002335 ORTHO05D006282 1.5e-52 211.1 299 45.2
Lalb_Chr23g0276371 Lupinus albus HOM05D002335 ORTHO05D006282 1.4e-50 204.5 274 46.0
FAN23G1616 Fragaria x ananassa HOM05D002335 ORTHO05D006282 9.2e-50 201.8 226 57.5
arahy.Tifrunner.gnm1.ann1.3UYF95 Arachis hypogaea HOM05D002335 ORTHO05D006282 1.7e-48 197.6 286 44.8
HPP92_004366 Vanilla planifolia HOM05D002335 ORTHO05D006282 3.8e-48 196.4 367 39.8
Lalb_Chr07g0181191 Lupinus albus HOM05D002335 ORTHO05D006282 1.1e-47 194.9 270 44.4
SHI23809 Sapria himalayana HOM05D002335 ORTHO05D006282 2.5e-47 193.7 315 44.8
CDE02G0868 Ceratophyllum demersum HOM05D002335 ORTHO05D006282 1.8e-45 187.6 197 56.3
Actinidia38482 Actinidia chinensis HOM05D002335 ORTHO05D006282 8.9e-45 185.3 133 72.2
Nitab4.5_0000343g0210 Nicotiana tabacum HOM05D002335 ORTHO05D006282 7.5e-44 182.2 101 100.0
Sc18g0002560 Simmondsia chinensis HOM05D002335 ORTHO05D006282 1.6e-41 174.5 326 41.4
Mapoly0011s0025 Marchantia polymorpha HOM05D002335 ORTHO05D006282 8.6e-40 168.7 401 31.7
MD02G1091600 Malus domestica HOM05D002335 ORTHO05D006282 4.7e-38 162.9 131 65.6
DCAR_028335 Daucus carota HOM05D002335 ORTHO05D006282 1.4e-37 161.4 187 56.1
Cpa.g.sc28.37 Carica papaya HOM05D002335 ORTHO05D006282 3.1e-37 160.2 112 78.6
Pp3c2_6470 Physcomitrium patens HOM05D002335 ORTHO05D006282 8.9e-37 158.7 408 31.4
Pp3c22_13730 Physcomitrium patens HOM05D002335 ORTHO05D006282 2.2e-35 154.1 369 35.5
Lalb_Chr23g0276381 Lupinus albus HOM05D002335 ORTHO05D006282 2.4e-34 150.6 99 80.8
Solyc07g041890.1 Solanum lycopersicum HOM05D002335 ORTHO05D006282 6.2e-30 136.0 230 45.7
SMO358G0254 Selaginella moellendorffii HOM05D002335 ORTHO05D006282 7.1e-26 122.5 194 42.3
Ah.14g084930 Amaranthus hybridus HOM05D002335 ORTHO05D006282 1.3e-24 118.2 77 79.2
Lalb_Chr07g0181181 Lupinus albus HOM05D002335 ORTHO05D006282 8.6e-24 115.5 97 67.0
Actinidia38481 Actinidia chinensis HOM05D002335 ORTHO05D006282 2.8e-22 110.5 97 70.1
Medtr2g041390 Medicago truncatula HOM05D002335 ORTHO05D006282 2.6e-20 104.0 99 61.6
Nitab4.5_0000343g0230 Nicotiana tabacum HOM05D002335 ORTHO05D284438 3.4e-20 103.6 54 88.9
Oeu011491.2 Olea europaea HOM05D002335 ORTHO05D006282 6.4e-19 99.4 78 69.2
PGSC0003DMG400019032 Solanum tuberosum HOM05D002335 ORTHO05D006282 4.1e-18 96.7 60 85.0
Cpa.g.c47777 Carica papaya HOM05D002335 ORTHO05D006282 8.7e-16 89.0 52 88.5
AagrBONN_evm.TU.Sc2ySwM_344.5493 Anthoceros agrestis HOM05D002335 ORTHO05D006282 1.2e-14 85.1 338 26.6
PSO210G7126 Papaver somniferum HOM05D002335 ORTHO05D006282 3.1e-13 80.5 68 61.8
Oeu031390.1 Olea europaea HOM05D002335 ORTHO05D006282 1.5e-12 78.2 48 77.1
arahy.Tifrunner.gnm1.ann1.HK8DFN Arachis hypogaea HOM05D002335 ORTHO05D006282 2.6e-12 77.4 84 51.2
CAN.G2458.1 Capsicum annuum HOM05D002335 ORTHO05D006282 4.2e-10 70.1 73 60.3
arahy.Tifrunner.gnm1.ann1.S4WZ34 Arachis hypogaea HOM05D000237 ORTHO05D017465 2.3e-08 64.3 57 54.4
arahy.Tifrunner.gnm1.ann1.WCUD5S Arachis hypogaea HOM05D000237 ORTHO05D017465 3.3e-07 60.5 56 53.6
CBR_g26318 Chara braunii HOM05D002335 ORTHO05D006282 1.6e-06 58.2 159 30.8
arahy.Tifrunner.gnm1.ann1.Y6L4BT Arachis hypogaea HOM05D000237 ORTHO05D017465 6.2e-06 56.2 72 43.1


User provided reference genes

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