Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1764.6 861 100.0
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1703.0 860 96.9
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1558.1 864 88.3
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1553.9 864 88.3
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1543.5 864 87.6
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1519.6 862 87.7
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1505.3 824 89.6
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1335.5 866 73.6
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1330.5 872 74.2
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1327.4 866 72.9
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1317.4 861 73.1
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1312.4 864 73.0
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1309.7 866 73.2
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1309.7 864 72.9
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1302.3 869 72.2
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1299.3 868 71.7
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1297.7 871 72.4
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1293.1 865 72.1
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1289.2 870 72.0
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1287.3 867 72.1
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1284.2 868 71.5
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1280.4 866 71.0
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1277.3 865 70.6
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1276.2 869 71.9
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1275.8 874 70.9
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1274.2 868 71.1
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1274.2 869 71.5
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1273.1 869 71.5
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1272.3 863 71.0
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1268.8 866 71.1
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1266.1 864 70.7
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1264.6 869 70.5
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1262.3 866 70.3
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1262.3 868 71.9
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1260.7 864 71.3
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1257.3 867 70.2
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1256.5 867 70.0
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1256.1 868 69.7
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1254.2 872 69.5
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1248.4 876 69.1
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1248.4 866 70.2
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1246.5 870 69.9
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1246.5 863 69.8
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1245.3 865 69.6
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1244.6 865 69.8
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1242.3 877 68.2
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1237.2 867 69.3
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1232.6 865 68.8
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1231.9 861 69.3
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1230.3 865 69.8
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1229.5 869 68.6
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1228.0 865 69.6
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1227.6 865 69.9
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1227.2 865 68.9
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1227.2 862 68.4
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1226.1 865 68.0
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1225.3 864 68.9
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1223.8 866 69.5
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1223.4 867 67.4
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1222.6 862 68.2
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1220.3 865 67.7
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1220.3 858 69.1
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1220.3 872 67.8
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1216.8 870 67.7
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1216.8 866 68.5
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1211.8 872 67.1
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1209.9 884 66.5
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1207.2 865 68.3
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1204.5 874 67.0
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1201.8 864 67.4
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1201.4 864 67.5
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1198.3 886 66.9
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1196.4 877 67.2
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1194.9 866 67.7
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1193.3 863 67.6
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1191.8 870 66.6
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1191.4 860 67.0
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1190.3 869 66.2
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1189.1 864 67.1
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1189.1 870 66.4
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1188.3 860 66.9
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1187.6 870 66.3
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1184.1 864 66.6
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1184.1 864 66.6
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1184.1 868 66.5
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1182.9 867 66.1
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1179.5 867 66.0
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1166.0 865 65.5
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1121.3 867 64.1
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1080.9 852 62.9
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 4.1e-311 1071.2 863 60.1
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 8.8e-311 1070.1 744 70.7
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 1.7e-309 1065.8 861 62.3
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 2.0e-302 1042.3 646 75.1
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 6.4e-301 1037.3 691 70.9
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 7.4e-297 1023.8 862 60.6
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 3.8e-285 984.9 692 67.9
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 6.5e-285 984.2 858 54.7
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 1.1e-284 983.4 864 55.4
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 4.5e-278 961.4 867 54.6
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 3.2e-276 955.3 855 54.6
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 1.0e-205 721.1 764 47.3
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 2.5e-167 593.6 388 72.9
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 3.8e-152 543.1 473 59.4
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 4.2e-143 513.1 460 57.4
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 1.4e-133 481.5 305 83.3
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 1.0e-120 438.7 359 61.6
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 1.4e-85 322.0 204 79.4
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 9.3e-66 256.1 168 70.2
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 1.4e-53 215.7 161 65.2
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 2.6e-52 211.5 198 56.6
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 2.9e-43 181.4 174 54.6
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 4.8e-38 164.1 216 44.0
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 4.2e-34 151.0 148 49.3
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 6.3e-30 137.1 85 72.9
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 3.0e-24 118.2 130 53.1
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 3.0e-24 118.2 76 73.7
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 6.8e-24 117.1 90 62.2
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 9.1e-21 106.7 87 64.4
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 3.5e-20 104.8 73 65.8
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 1.0e-19 103.2 106 49.1
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 3.0e-16 91.7 210 29.0
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 2.4e-13 82.0 304 24.7
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 9.2e-13 80.1 362 26.0
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 2.0e-12 79.0 64 57.8
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.7e-12 78.6 319 25.1
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 1.5e-10 72.8 329 23.1
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 2.5e-10 72.0 240 23.8
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.2e-09 69.7 299 23.4
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 1.4e-08 66.2 92 43.5
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 5.2e-08 64.3 301 22.9
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 2.0e-07 62.4 312 22.4
ATR0511G001 Amborella trichopoda HOM05D006378 ORTHO05D007959 3.4e-07 61.6 81 46.9
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 9.8e-07 60.1 33 75.8
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 1.3e-06 59.7 302 24.8
CBR_g36370 Chara braunii HOM05D008676 ORTHO05D010936 2.2e-06 58.9 84 40.5
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 3.7e-06 58.2 340 22.4
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 3.7e-06 58.2 298 23.2
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 4.9e-06 57.8 284 24.6
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 6.4e-06 57.4 309 20.7
AagrBONN_evm.TU.Sc2ySwM_369.291 Anthoceros agrestis HOM05D008676 ORTHO05D010936 8.3e-06 57.0 170 25.9


User provided reference genes

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