Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 0.0e+00 1382.1 694 100.0
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 0.0e+00 1266.9 720 90.3
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 9.5e-312 1072.8 711 77.6
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 7.1e-311 1070.1 718 77.4
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 9.2e-306 1053.1 718 76.3
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 2.7e-281 971.8 716 72.1
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 5.1e-248 861.3 721 63.1
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 2.4e-245 852.4 715 62.1
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 1.8e-240 836.3 721 61.7
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 2.7e-233 812.4 722 59.6
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 6.7e-232 807.7 718 60.6
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 2.5e-231 805.8 718 60.0
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 2.0e-228 796.2 727 58.3
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 5.9e-228 794.7 727 59.7
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 2.9e-227 792.3 728 58.9
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 2.9e-227 792.3 738 58.4
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 8.5e-227 790.8 713 58.8
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 1.9e-226 789.6 758 56.6
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 4.2e-226 788.5 719 59.1
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 9.4e-226 787.3 719 59.0
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 9.4e-226 787.3 719 59.0
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 2.7e-225 785.8 726 59.4
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 1.8e-224 783.1 726 57.4
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 9.7e-223 777.3 735 58.8
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 3.7e-222 775.4 731 58.3
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 1.1e-221 773.9 717 59.0
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 2.4e-221 772.7 726 56.9
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 4.1e-221 771.9 715 58.3
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 1.5e-220 770.0 717 58.4
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 3.4e-220 768.8 714 57.7
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 7.7e-220 767.7 720 58.5
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 1.0e-219 767.3 739 57.0
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 1.3e-219 766.9 743 56.7
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 5.0e-219 765.0 717 58.3
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 1.4e-218 763.5 726 57.2
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 1.9e-218 763.1 767 55.0
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 1.9e-218 763.1 745 55.8
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 3.2e-218 762.3 714 57.8
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 4.2e-218 761.9 714 58.7
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 1.6e-217 760.0 732 57.1
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 2.1e-217 759.6 725 57.4
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 4.7e-217 758.4 719 56.6
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 4.7e-217 758.4 717 56.8
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 7.9e-217 757.7 720 57.5
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 3.0e-216 755.7 720 56.0
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 5.2e-216 755.0 713 56.5
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 3.3e-215 752.3 778 53.3
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 4.4e-215 751.9 723 55.9
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 9.7e-215 750.7 717 57.5
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 1.7e-214 750.0 724 57.2
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 2.2e-214 749.6 778 53.1
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 6.3e-214 748.0 723 56.7
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 1.1e-213 747.3 720 56.8
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 1.4e-213 746.9 728 57.1
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 1.4e-213 746.9 727 55.4
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 1.8e-213 746.5 778 53.0
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 4.1e-213 745.3 729 57.9
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 4.1e-213 745.3 735 54.8
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 7.0e-213 744.6 726 56.9
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 7.7e-212 741.1 740 55.4
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 1.9e-210 736.5 749 54.5
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 2.5e-210 736.1 735 55.5
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 3.2e-210 735.7 725 54.3
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 4.2e-210 735.3 718 56.0
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 3.6e-209 732.3 804 51.6
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 1.0e-208 730.7 734 55.0
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 1.8e-208 729.9 727 55.0
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 3.0e-208 729.2 715 55.0
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 4.0e-208 728.8 731 54.3
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 5.2e-208 728.4 715 55.1
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 8.8e-208 727.6 728 56.3
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 1.2e-207 727.2 719 54.4
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 1.2e-207 727.2 718 55.2
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 3.3e-207 725.7 740 55.8
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 9.7e-207 724.2 715 54.8
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 9.7e-207 724.2 717 54.4
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 2.2e-206 723.0 702 57.3
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 2.8e-206 722.6 724 54.3
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 2.8e-206 722.6 721 54.4
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 3.7e-206 722.2 723 54.5
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 3.7e-206 722.2 696 57.0
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 4.8e-206 721.8 716 55.6
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 6.3e-206 721.5 735 54.8
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 1.1e-205 720.7 718 54.6
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 3.5e-204 715.7 720 53.9
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 7.7e-204 714.5 716 53.5
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 7.7e-204 714.5 728 54.3
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 1.0e-203 714.1 720 53.9
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 1.0e-203 714.1 720 53.9
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 3.8e-203 712.2 747 53.3
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 5.0e-203 711.8 726 52.8
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 6.5e-203 711.4 750 52.5
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 1.9e-202 709.9 718 53.6
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 3.2e-202 709.1 721 54.4
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 5.5e-202 708.4 718 53.5
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 2.7e-201 706.1 721 53.8
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 3.6e-201 705.7 714 54.6
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 3.0e-200 702.6 840 49.4
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 1.3e-198 697.2 717 52.9
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 1.3e-198 697.2 717 52.9
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 1.4e-197 693.7 717 53.3
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 2.3e-195 686.4 881 47.6
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 5.0e-195 685.3 749 50.9
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 6.5e-195 684.9 710 53.1
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 1.5e-191 673.7 814 49.9
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 5.7e-191 671.8 723 52.1
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 4.1e-189 665.6 726 51.7
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 3.3e-186 656.0 695 52.8
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 4.3e-186 655.6 721 51.9
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 2.7e-180 636.3 730 50.4
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 1.0e-179 634.4 756 49.9
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.4e-176 624.0 840 45.8
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 5.8e-175 618.6 963 42.2
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 1.3e-174 617.5 743 49.0
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 7.8e-172 608.2 644 54.0
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 2.8e-169 599.7 784 44.6
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 2.9e-166 589.7 714 46.6
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 1.6e-164 583.9 554 58.8
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 6.0e-164 582.0 635 52.3
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 7.3e-162 575.1 717 46.7
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 4.3e-154 549.3 909 38.3
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 5.6e-154 548.9 720 44.7
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 2.1e-153 547.0 669 49.0
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 6.6e-147 525.4 561 52.6
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 1.9e-138 497.3 478 57.7
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 3.4e-135 486.5 588 50.7
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 6.1e-116 422.5 451 54.1
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 2.5e-101 374.0 287 65.5
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 9.4e-101 372.1 562 43.6
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 6.1e-92 342.8 475 45.5
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 3.0e-83 313.9 227 67.8
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 8.6e-78 295.8 232 65.1
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 6.1e-76 289.7 232 63.8
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 5.2e-75 286.6 278 55.8
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 5.7e-74 283.1 388 43.6
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 2.4e-56 224.6 253 47.0
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.5e-53 214.5 151 66.9
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 4.4e-42 177.2 125 66.4
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 2.2e-41 174.9 136 63.2
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.5e-37 162.2 176 50.0
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 3.0e-30 137.9 74 86.5
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 5.3e-27 127.1 276 38.0
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 5.1e-22 110.5 121 47.9
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 4.3e-21 107.5 48 93.8
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 7.4e-13 80.1 82 52.4
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 2.6e-10 71.6 62 50.0
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 7.6e-10 70.1 54 63.0
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 1.7e-09 68.9 57 54.4
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 3.8e-09 67.8 62 54.8
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 1.2e-07 62.8 33 75.8
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 2.1e-07 62.0 52 59.6


User provided reference genes

Program Settings