Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 4.9e-216 754.2 388 100.0
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 5.8e-193 677.6 384 90.6
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 2.8e-187 658.7 388 86.6
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 1.1e-183 646.7 384 85.4
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.6e-182 642.9 388 85.1
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 6.1e-182 641.0 384 85.2
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 7.9e-182 640.6 384 84.9
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 3.9e-181 638.3 383 84.6
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 1.1e-178 630.2 388 82.2
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 1.9e-175 619.4 388 80.2
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 1.6e-174 616.3 383 80.9
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 1.0e-173 613.6 388 79.4
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 2.3e-173 612.5 384 79.2
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 1.5e-172 609.8 388 78.9
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 1.4e-170 603.2 387 78.0
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 2.2e-168 595.9 388 77.8
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 3.6e-166 588.6 383 78.1
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 1.1e-164 583.6 384 76.0
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 4.4e-164 581.6 388 76.3
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 7.4e-164 580.9 388 76.0
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 2.2e-163 579.3 389 75.8
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 4.8e-163 578.2 388 75.3
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 1.8e-162 576.2 388 76.3
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 9.1e-162 573.9 383 76.0
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.0e-161 572.8 388 74.2
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 2.0e-161 572.8 388 73.2
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 2.9e-160 568.9 388 74.2
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 5.0e-160 568.2 388 75.0
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 1.5e-159 566.6 388 75.0
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 9.4e-159 563.9 388 73.7
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 1.2e-158 563.5 388 73.5
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 2.1e-158 562.8 388 72.9
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 3.6e-158 562.0 388 74.0
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 4.7e-158 561.6 388 73.7
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 1.4e-157 560.1 381 74.0
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 1.4e-157 560.1 388 73.5
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 3.0e-157 558.9 388 72.4
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 5.2e-157 558.1 388 73.7
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 1.2e-156 557.0 389 73.0
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 2.0e-156 556.2 384 72.9
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 1.3e-155 553.5 388 73.7
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 1.7e-155 553.1 388 72.2
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 2.2e-155 552.7 381 73.2
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 2.8e-155 552.4 377 72.9
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 4.8e-155 551.6 389 72.5
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 1.4e-154 550.1 388 73.2
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 1.4e-154 550.1 388 73.2
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.4e-154 550.1 385 73.2
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 2.4e-154 549.3 383 72.1
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 7.0e-154 547.7 390 71.5
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 2.0e-153 546.2 388 71.6
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 5.9e-153 544.7 393 71.5
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 1.7e-152 543.1 388 73.2
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 2.9e-152 542.3 406 69.7
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 3.8e-152 542.0 350 78.9
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 5.0e-152 541.6 385 70.9
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 6.5e-152 541.2 388 70.6
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 1.1e-151 540.4 383 70.5
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 1.9e-151 539.7 389 70.7
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 2.5e-151 539.3 391 71.1
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 5.5e-151 538.1 384 71.6
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 1.6e-150 536.6 385 71.2
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 2.7e-150 535.8 389 71.0
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 6.8e-149 531.2 387 69.5
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 1.5e-148 530.0 384 70.6
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.0e-148 529.6 388 70.9
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 4.4e-148 528.5 415 67.5
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 5.7e-148 528.1 383 70.0
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 7.5e-148 527.7 385 70.4
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 1.7e-147 526.6 388 68.3
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 2.2e-147 526.2 384 69.8
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 6.3e-147 524.6 391 69.6
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 8.3e-147 524.2 388 70.4
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 2.0e-145 519.6 396 67.9
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.5e-143 513.5 420 65.7
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.9e-143 513.1 420 65.5
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 4.2e-143 511.9 389 68.1
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 5.5e-143 511.5 361 71.2
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.8e-142 509.2 420 65.2
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 4.7e-142 508.4 388 66.0
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.4e-141 506.9 420 65.2
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 3.0e-141 505.8 392 67.1
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 3.0e-141 505.8 388 69.3
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 4.0e-141 505.4 348 74.4
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 8.9e-141 504.2 388 67.0
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 2.0e-140 503.1 387 68.0
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 3.4e-140 502.3 386 68.1
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 9.8e-140 500.7 385 68.1
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 1.8e-138 496.5 387 67.2
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 1.8e-138 496.5 385 68.1
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 9.2e-138 494.2 388 65.2
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 1.6e-137 493.4 385 67.5
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 4.5e-137 491.9 384 68.0
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 5.9e-137 491.5 354 73.7
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 5.9e-137 491.5 386 67.6
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 5.9e-137 491.5 386 67.6
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 1.3e-136 490.3 386 67.6
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 1.3e-136 490.3 385 67.5
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 2.3e-136 489.6 385 66.8
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 2.3e-136 489.6 386 67.1
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 2.9e-136 489.2 385 67.0
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 1.1e-135 487.3 384 64.1
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.9e-135 486.5 388 64.4
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 1.9e-135 486.5 388 64.4
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 3.3e-135 485.7 348 71.6
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 1.0e-133 480.7 385 67.0
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 1.4e-133 480.3 385 67.0
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 2.6e-132 476.1 385 66.5
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 2.6e-132 476.1 385 66.2
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 7.0e-130 468.0 347 67.4
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 1.0e-128 464.2 399 61.9
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 5.0e-128 461.8 384 64.1
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 2.3e-125 453.0 390 61.8
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 2.2e-123 446.4 385 63.1
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 3.7e-123 445.7 392 61.0
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 9.2e-122 441.0 389 59.9
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 8.6e-120 434.5 397 58.9
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 1.5e-119 433.7 388 59.8
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 1.6e-118 430.3 378 60.3
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 1.7e-115 420.2 399 56.1
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 3.3e-111 406.0 388 56.4
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 3.5e-105 386.0 388 55.2
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 8.4e-99 364.8 297 60.3
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 2.3e-96 356.7 271 67.5
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 6.9e-93 345.1 421 48.7
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 1.9e-90 337.0 437 45.3
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 5.8e-84 315.5 226 69.0
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 7.1e-82 308.5 297 59.3
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 7.9e-81 305.1 368 47.3
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 1.8e-80 303.9 265 57.4
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 3.3e-71 273.1 386 42.0
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 6.7e-64 248.8 142 92.3
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 2.4e-61 240.4 164 75.0
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 2.0e-60 237.3 461 35.4
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 2.3e-48 197.2 244 45.9
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 2.0e-47 194.1 152 71.1
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 6.1e-41 172.6 170 57.6
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 9.8e-39 165.2 128 68.0
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 2.7e-36 157.1 392 30.1
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 2.3e-32 144.1 149 56.4
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 2.6e-31 140.6 155 53.5
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 1.4e-29 134.8 89 76.4
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 2.4e-29 134.0 177 45.8
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 4.1e-29 133.3 108 63.0
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 7.0e-29 132.5 138 56.5
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.6e-28 131.3 79 79.7
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 1.6e-25 121.3 120 57.5
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 1.5e-23 114.8 213 38.0
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 6.3e-22 109.4 82 64.6
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 1.1e-21 108.6 126 54.0
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 5.4e-21 106.3 82 64.6
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 2.0e-20 104.4 126 52.4
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 1.6e-17 94.7 125 49.6
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 3.1e-16 90.5 75 61.3
Zm00001eb193770 Zea mays HOM05D004239 ORTHO05D445176 2.9e-14 84.0 82 52.4
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 1.4e-13 81.6 106 44.3
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 1.6e-12 78.2 43 90.7
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 2.7e-12 77.4 47 74.5
Potri.015G125201 Populus trichocarpa HOM05D004239 ORTHO05D005191 7.8e-12 75.9 51 64.7
arahy.Tifrunner.gnm1.ann1.04YHM3 Arachis hypogaea HOM05D004239 ORTHO05D005191 1.3e-11 75.1 101 50.5
Oeu038248.1 Olea europaea HOM05D004239 ORTHO05D288322 1.3e-11 75.1 41 87.8
Zm00001eb313220 Zea mays HOM05D004239 ORTHO05D005191 8.6e-11 72.4 80 51.2
Zm00001eb342830 Zea mays HOM05D004239 ORTHO05D005191 1.2e-07 62.0 50 66.0
RcHm_v2.0_Chr3g0454471 Rosa chinensis HOM05D004239 ORTHO05D005191 7.5e-07 59.3 36 83.3
CBR_g19142 Chara braunii HOM05D007151 ORTHO05D009056 1.7e-06 58.2 122 30.3
Zm00001eb019540 Zea mays HOM05D000931 ORTHO05D001924 1.7e-06 58.2 38 73.7
Zm00001eb406200 Zea mays HOM05D004239 ORTHO05D005191 8.3e-06 55.8 80 43.8


User provided reference genes

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