Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009306g0010 Nicotiana tabacum HOM05D004946 ORTHO05D006101 7.3e-210 733.8 412 100.0
PGSC0003DMG401005635 Solanum tuberosum HOM05D004946 ORTHO05D006101 4.7e-132 475.3 357 76.8
Sopen03g038310 Solanum pennellii HOM05D004946 ORTHO05D006101 1.4e-128 463.8 357 75.4
Nitab4.5_0000974g0090 Nicotiana tabacum HOM05D004946 ORTHO05D006101 2.3e-123 446.4 355 74.6
CAN.G1889.4 Capsicum annuum HOM05D004946 ORTHO05D006101 1.1e-120 437.6 356 73.6
Peaxi162Scf00015g01034 Petunia axillaris HOM05D004946 ORTHO05D006101 4.3e-109 399.1 327 68.2
Nitab4.5_0000208g0330 Nicotiana tabacum HOM05D004946 ORTHO05D006101 5.8e-98 362.1 356 63.2
Nitab4.5_0012710g0020 Nicotiana tabacum HOM05D004946 ORTHO05D006101 1.3e-94 350.9 356 62.1
Dinv15680 Davidia involucrata HOM05D004946 ORTHO05D006101 6.8e-91 338.6 368 56.8
Solyc03g119460.4 Solanum lycopersicum HOM05D004946 ORTHO05D006101 7.1e-88 328.6 357 59.7
Actinidia18931 Actinidia chinensis HOM05D004946 ORTHO05D006101 9.3e-80 301.6 369 53.7
Dinv28107 Davidia involucrata HOM05D004946 ORTHO05D006101 5.1e-78 295.8 368 53.0
Hma1.2p1_2409F.1_g321510 Hydrangea macrophylla HOM05D004946 ORTHO05D006101 6.9e-75 285.4 404 47.3
Hma1.2p1_0701F.1_g205890 Hydrangea macrophylla HOM05D004946 ORTHO05D006101 1.5e-74 284.3 342 52.3
Atru.chr9.855 Acer truncatum HOM05D004946 ORTHO05D006101 7.6e-74 282.0 369 51.8
Cc04_g07080 Coffea canephora HOM05D004946 ORTHO05D006101 8.4e-73 278.5 358 52.8
Cfa019764 Carpinus fangiana HOM05D004946 ORTHO05D006101 5.4e-72 275.8 370 49.2
Peaxi162Scf00634g00318 Petunia axillaris HOM05D004946 ORTHO05D006101 7.1e-72 275.4 315 54.6
MSTRG.11071 Avicennia marina HOM05D004946 ORTHO05D006101 1.3e-70 271.2 360 50.0
Prupe.5G221700 Prunus persica HOM05D004946 ORTHO05D006101 1.3e-70 271.2 368 52.7
MD14G1227000 Malus domestica HOM05D004946 ORTHO05D006101 3.0e-70 270.0 369 50.4
Thecc.03G035700 Theobroma cacao HOM05D004946 ORTHO05D006101 3.0e-70 270.0 370 51.6
Haze_18683 Corylus avellana HOM05D004946 ORTHO05D006101 1.5e-69 267.7 370 49.5
Duzib084G0074 Durio zibethinus HOM05D004946 ORTHO05D006101 2.5e-69 266.9 371 49.6
Oeu064714.1 Olea europaea HOM05D004946 ORTHO05D006101 2.1e-68 263.8 360 48.6
CSS0004173 Camellia sinensis var. sinensis HOM05D004946 ORTHO05D006101 1.8e-67 260.8 370 49.7
QL10p025417 Quercus lobata HOM05D004946 ORTHO05D006101 2.2e-65 253.8 370 48.9
FAN08G1246 Fragaria x ananassa HOM05D004946 ORTHO05D006101 8.4e-65 251.9 368 47.6
FAN18G2620 Fragaria x ananassa HOM05D004946 ORTHO05D006101 8.4e-65 251.9 368 47.0
Gohir.D09G049200 Gossypium hirsutum HOM05D004946 ORTHO05D006101 1.1e-64 251.5 370 49.2
Oeu056801.1 Olea europaea HOM05D004946 ORTHO05D006101 1.1e-64 251.5 350 49.4
Ciclev10020493m.g Citrus clementina HOM05D004946 ORTHO05D006101 1.4e-64 251.1 367 50.7
FvH4_5g12080 Fragaria vesca HOM05D004946 ORTHO05D006101 1.4e-64 251.1 368 47.0
Gorai.006G060600 Gossypium raimondii HOM05D004946 ORTHO05D006101 3.2e-64 250.0 370 48.9
FAN18G3139 Fragaria x ananassa HOM05D004946 ORTHO05D006101 9.3e-64 248.4 368 46.7
Potri.012G056200 Populus trichocarpa HOM05D004946 ORTHO05D006101 3.5e-63 246.5 368 46.7
Actinidia35090 Actinidia chinensis HOM05D004946 ORTHO05D006101 7.9e-63 245.4 313 52.1
COL.COLO4_11303 Corchorus olitorius HOM05D004946 ORTHO05D006101 6.2e-60 235.7 385 44.2
FAN04G0770 Fragaria x ananassa HOM05D004946 ORTHO05D006101 6.2e-60 235.7 359 46.2
RcHm_v2.0_Chr7g0185491 Rosa chinensis HOM05D004946 ORTHO05D006101 5.3e-59 232.6 366 45.4
Gohir.D08G105600 Gossypium hirsutum HOM05D004946 ORTHO05D006101 6.9e-59 232.3 372 45.2
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 1.0e-57 228.4 341 48.1
Eucgr.K02226 Eucalyptus grandis HOM05D004946 ORTHO05D006101 2.2e-57 227.3 390 45.9
ECA238G2506 Erigeron canadensis HOM05D004946 ORTHO05D006101 4.9e-57 226.1 360 44.2
Migut.I00881 Erythranthe guttata HOM05D004946 ORTHO05D006101 6.5e-57 225.7 377 45.9
FAN13G1851 Fragaria x ananassa HOM05D004946 ORTHO05D006101 1.9e-56 224.2 357 45.7
TWI15G0834 Tripterygium wilfordii HOM05D004946 ORTHO05D006101 2.5e-56 223.8 375 46.1
Nn3g17855 Nelumbo nucifera HOM05D004946 ORTHO05D006101 7.1e-56 222.2 370 48.4
vmacro16446 Vaccinium macrocarpon HOM05D004946 ORTHO05D006101 1.6e-55 221.1 374 44.9
Rhsim12G0143100 Rhododendron simsii HOM05D004946 ORTHO05D006101 2.7e-55 220.3 333 47.7
Aqoxy3G00287 Aquilegia oxysepala HOM05D004946 ORTHO05D006101 1.8e-54 217.6 369 45.3
Gohir.A08G095000 Gossypium hirsutum HOM05D004946 ORTHO05D006101 3.3e-53 213.4 308 47.4
PGR044G1576 Punica granatum HOM05D004946 ORTHO05D006101 9.6e-53 211.8 374 44.4
CsaV3_1G006630 Cucumis sativus L. HOM05D004946 ORTHO05D006101 8.2e-52 208.8 371 43.7
arahy.Tifrunner.gnm1.ann1.G56NCJ Arachis hypogaea HOM05D004946 ORTHO05D006101 1.4e-51 208.0 369 43.4
Lalb_Chr05g0222491 Lupinus albus HOM05D004946 ORTHO05D006101 1.8e-51 207.6 367 43.9
Sc12g0007670 Simmondsia chinensis HOM05D004946 ORTHO05D006101 1.8e-51 207.6 360 43.3
arahy.Tifrunner.gnm1.ann1.94ZJ0E Arachis hypogaea HOM05D004946 ORTHO05D006101 3.1e-51 206.8 369 43.4
MELO3C002087.2 Cucumis melo HOM05D004946 ORTHO05D006101 3.1e-51 206.8 371 43.4
Nn4g23854 Nelumbo nucifera HOM05D004946 ORTHO05D006101 3.1e-51 206.8 363 44.6
arahy.Tifrunner.gnm1.ann1.N3S6I2 Arachis hypogaea HOM05D004946 ORTHO05D006101 1.2e-50 204.9 369 42.8
Gohir.A09G048000 Gossypium hirsutum HOM05D004946 ORTHO05D006101 1.2e-50 204.9 330 47.0
CANSAT80G1182 Cannabis sativa HOM05D004946 ORTHO05D006101 3.4e-50 203.4 371 43.7
CiPaw.16G086800 Carya illinoinensis HOM05D004946 ORTHO05D006101 5.9e-50 202.6 370 42.4
Manes.01G011100 Manihot esculenta HOM05D004946 ORTHO05D006101 7.6e-50 202.2 368 44.6
Lj4g0022250 Lotus japonicus HOM05D004946 ORTHO05D006101 3.8e-49 199.9 370 45.4
VMungo0720G2584 Vigna mungo HOM05D004946 ORTHO05D006101 6.5e-49 199.1 371 42.0
Gorai.004G113500 Gossypium raimondii HOM05D004946 ORTHO05D006101 4.2e-48 196.4 370 41.6
Medtr8g104260 Medicago truncatula HOM05D004946 ORTHO05D006101 3.6e-47 193.4 368 40.8
arahy.Tifrunner.gnm1.ann1.X2WJJP Arachis hypogaea HOM05D004946 ORTHO05D006101 4.6e-47 193.0 367 41.1
Psat7g010600 Pisum sativum HOM05D004946 ORTHO05D006101 1.8e-46 191.0 368 39.7
unitig_8.g3895 Utricularia gibba HOM05D004946 ORTHO05D006101 2.5e-45 187.2 344 41.6
AUR62008463 Chenopodium quinoa HOM05D004946 ORTHO05D006101 4.3e-45 186.4 328 42.4
Ca_25442_v3 Cicer arietinum L. HOM05D004946 ORTHO05D006101 5.7e-45 186.0 363 44.9
AUR62021632 Chenopodium quinoa HOM05D004946 ORTHO05D006101 2.8e-44 183.7 328 43.0
Lalb_Chr09g0331081 Lupinus albus HOM05D004946 ORTHO05D006101 4.8e-44 183.0 371 41.2
Glyma.10G040800 Glycine max HOM05D004946 ORTHO05D006101 3.1e-43 180.3 368 40.8
GSVIVG01008293001 Vitis vinifera HOM05D004946 ORTHO05D006101 3.1e-43 180.3 352 41.2
HPP92_004811 Vanilla planifolia HOM05D004946 ORTHO05D006101 9.0e-43 178.7 370 43.0
DCAR_023206 Daucus carota HOM05D004946 ORTHO05D006101 1.2e-42 178.3 324 44.1
AUR62038115 Chenopodium quinoa HOM05D004946 ORTHO05D006101 4.5e-42 176.4 323 42.1
Sabra12G0039900 Salix brachista HOM05D004946 ORTHO05D006101 4.5e-42 176.4 365 39.5
PSO478G0599 Papaver somniferum HOM05D004946 ORTHO05D006101 1.0e-41 175.3 368 40.8
Phvul.007G154000 Phaseolus vulgaris HOM05D004946 ORTHO05D006101 3.2e-40 170.2 372 44.1
PSO017G0469 Papaver somniferum HOM05D004946 ORTHO05D006101 4.2e-40 169.9 369 39.6
ClCG04G011130 Citrullus lanatus HOM05D004946 ORTHO05D006101 5.5e-40 169.5 389 38.8
A07p29630 Brassica napus HOM05D004946 ORTHO05D006101 9.4e-40 168.7 374 39.6
HPP92_004808 Vanilla planifolia HOM05D004946 ORTHO05D006101 4.6e-39 166.4 346 43.4
CDE02G4219 Ceratophyllum demersum HOM05D004946 ORTHO05D006101 7.9e-39 165.6 372 39.2
BcaC08g45619 Brassica carinata HOM05D004946 ORTHO05D006101 6.7e-38 162.5 368 38.3
Sp5g29040 Schrenkiella parvula HOM05D004946 ORTHO05D006101 6.7e-38 162.5 371 39.4
TPR.G32702 Trifolium pratense HOM05D004946 ORTHO05D006101 4.3e-37 159.8 369 37.4
HanXRQChr06g0184711 Helianthus annuus HOM05D004946 ORTHO05D006101 9.7e-37 158.7 352 38.1
GSVIVG01008294001 Vitis vinifera HOM05D004946 ORTHO05D006101 3.7e-36 156.8 349 39.3
CARHR066930 Cardamine hirsuta HOM05D004946 ORTHO05D006101 1.1e-35 155.2 367 39.5
C06p33810 Brassica napus HOM05D004946 ORTHO05D006101 1.8e-35 154.5 372 37.9
Sed0008793 Sechium edule HOM05D004946 ORTHO05D006101 2.4e-35 154.1 276 41.7
SGA_v2.0_scaffold5G02571 Striga asiatica HOM05D004946 ORTHO05D006101 2.4e-35 154.1 368 38.9
BolC6t38494H Brassica oleracea HOM05D004946 ORTHO05D006101 2.0e-34 151.0 372 37.6
BraA07t30604Z Brassica rapa HOM05D004946 ORTHO05D006101 1.3e-33 148.3 377 37.4
AT1G73840 Arabidopsis thaliana HOM05D004946 ORTHO05D006101 2.9e-33 147.1 371 39.9
Thhalv10018702m.g Eutrema salsugineum HOM05D004946 ORTHO05D006101 2.5e-32 144.1 366 41.0
BcaB03g15098 Brassica carinata HOM05D004946 ORTHO05D006101 5.5e-32 142.9 391 37.6
Gohir.D11G132850 Gossypium hirsutum HOM05D004946 ORTHO05D006101 2.7e-31 140.6 181 54.7
Gohir.D05G109701 Gossypium hirsutum HOM05D004946 ORTHO05D006101 1.4e-30 138.3 181 54.1
BcaB03g15093 Brassica carinata HOM05D004946 ORTHO05D006101 5.2e-30 136.3 358 37.7
C06p47990 Brassica napus HOM05D004946 ORTHO05D006101 5.2e-30 136.3 358 37.7
Cpa.g.sc3.508 Carica papaya HOM05D004946 ORTHO05D006101 1.1e-29 135.2 201 48.8
Aa31LG4G4160 Aethionema arabicum HOM05D004946 ORTHO05D006101 1.5e-29 134.8 396 35.6
BcaB03g15731 Brassica carinata HOM05D004946 ORTHO05D006101 3.3e-29 133.7 382 36.6
Glyma.08G041600 Glycine max HOM05D004946 ORTHO05D006101 4.4e-29 133.3 348 37.1
Gohir.D08G202000 Gossypium hirsutum HOM05D004946 ORTHO05D006101 2.2e-28 131.0 158 55.7
A07p39700 Brassica napus HOM05D004946 ORTHO05D006101 3.7e-28 130.2 362 37.8
BraA07t31519Z Brassica rapa HOM05D004946 ORTHO05D006101 3.7e-28 130.2 366 36.9
Lsat_1_v5_gn_2_12261 Lactuca sativa HOM05D004946 ORTHO05D006101 1.8e-27 127.9 362 40.9
BcaB03g15090 Brassica carinata HOM05D004946 ORTHO05D006101 3.1e-27 127.1 364 36.8
Ah.11g048200 Amaranthus hybridus HOM05D004946 ORTHO05D006101 7.0e-27 125.9 350 34.6
EL10Ac5g11063 Beta vulgaris HOM05D004946 ORTHO05D006101 9.1e-27 125.6 221 40.7
Carub.0002s2060 Capsella rubella HOM05D004946 ORTHO05D006101 1.2e-26 125.2 370 34.9
AL2G33660 Arabidopsis lyrata HOM05D004946 ORTHO05D006101 1.7e-25 121.3 370 34.3
Zm00001eb292700 Zea mays HOM05D004946 ORTHO05D006101 6.5e-25 119.4 356 34.3
THA.LOC104812144 Tarenaya hassleriana HOM05D004946 ORTHO05D006101 1.5e-24 118.2 368 37.5
Ca_25456_v3 Cicer arietinum L. HOM05D004946 ORTHO05D006101 4.2e-24 116.7 267 36.7
ATR1125G052 Amborella trichopoda HOM05D004946 ORTHO05D006101 1.8e-22 111.3 360 35.6
Glyma.05G234300 Glycine max HOM05D004946 ORTHO05D006101 2.3e-22 110.9 326 37.4
MBI02_g11379_MAGBIO Magnolia biondii HOM05D004946 ORTHO05D006101 3.0e-22 110.5 179 44.1
Ca_15108_v3 Cicer arietinum L. HOM05D004946 ORTHO05D006101 4.1e-19 100.1 157 46.5
SGA_v2.0_scaffold37G14831 Striga asiatica HOM05D004946 ORTHO05D006101 1.2e-18 98.6 330 32.4
BcaB03g15096 Brassica carinata HOM05D004946 ORTHO05D006101 2.0e-18 97.8 308 34.7
BcaNung06927 Brassica carinata HOM05D004946 ORTHO05D006101 1.2e-15 88.6 176 43.2
Gohir.A11G277050 Gossypium hirsutum HOM05D004946 ORTHO05D006101 6.8e-14 82.8 84 58.3
DCAR_015143 Daucus carota HOM05D004946 ORTHO05D006101 8.8e-14 82.4 321 29.0
CDE06G1062 Ceratophyllum demersum HOM05D004946 ORTHO05D006101 9.8e-13 79.0 241 33.2
Os05g0513300 Oryza sativa ssp. japonica HOM05D004946 ORTHO05D006101 2.2e-12 77.8 216 31.9
Glyma.13G127700 Glycine max HOM05D004946 ORTHO05D006101 1.4e-11 75.1 100 50.0
CANSAT80G2575 Cannabis sativa HOM05D004946 ORTHO05D006101 3.0e-06 57.4 80 48.8


User provided reference genes

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