Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 3.4e-174 615.1 375 100.0
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 9.1e-151 537.3 332 89.2
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 2.2e-149 532.7 330 88.8
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 2.2e-149 532.7 330 88.8
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 1.6e-142 510.0 329 83.6
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 2.3e-138 496.1 257 98.4
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 1.2e-134 483.8 328 82.9
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 1.7e-109 400.2 331 70.1
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 2.4e-106 389.8 329 67.2
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 2.4e-106 389.8 336 65.8
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 2.6e-105 386.3 248 78.2
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 3.4e-105 386.0 327 67.3
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 1.7e-104 383.6 332 63.9
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 6.4e-104 381.7 328 67.7
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 1.1e-103 380.9 337 66.8
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 3.2e-103 379.4 329 64.7
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 2.7e-102 376.3 336 63.7
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 4.6e-102 375.6 248 74.6
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 7.8e-102 374.8 245 78.0
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 3.9e-101 372.5 333 63.7
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 5.1e-101 372.1 330 63.3
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 8.7e-101 371.3 335 62.7
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 8.7e-101 371.3 327 66.1
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.1e-100 370.9 333 63.4
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 3.3e-100 369.4 337 62.9
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 4.3e-100 369.0 341 60.7
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 3.6e-99 365.9 328 64.3
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 8.1e-99 364.8 332 63.3
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 1.8e-98 363.6 330 64.8
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 5.3e-98 362.1 248 75.0
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 5.3e-98 362.1 329 62.6
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 9.0e-98 361.3 347 62.8
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 1.2e-97 360.9 328 62.5
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 1.2e-97 360.9 335 62.7
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 1.5e-97 360.5 345 58.0
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 1.5e-97 360.5 327 62.4
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 2.0e-97 360.1 328 64.3
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 2.6e-97 359.8 345 59.4
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 2.6e-97 359.8 331 63.7
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 2.6e-97 359.8 290 66.6
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 4.4e-97 359.0 327 61.2
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 5.8e-97 358.6 327 60.2
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 5.8e-97 358.6 368 58.7
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 1.3e-96 357.5 327 63.3
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 1.7e-96 357.1 331 60.4
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 2.2e-96 356.7 333 62.2
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 2.9e-96 356.3 346 59.0
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 2.9e-96 356.3 346 59.0
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 8.4e-96 354.8 331 60.1
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 1.4e-95 354.0 328 59.5
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 1.4e-95 354.0 333 61.9
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 1.9e-95 353.6 335 61.2
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 3.2e-95 352.8 327 58.7
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 7.1e-95 351.7 332 61.4
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 9.3e-95 351.3 248 72.2
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 9.3e-95 351.3 248 72.2
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 1.6e-94 350.5 329 61.1
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 2.1e-94 350.1 331 60.7
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 2.7e-94 349.7 330 63.3
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 3.5e-94 349.4 329 62.9
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 4.6e-94 349.0 253 73.9
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 4.6e-94 349.0 328 63.1
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 3.0e-93 346.3 331 61.3
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 6.6e-93 345.1 268 68.7
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 6.6e-93 345.1 333 59.8
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 8.7e-93 344.7 330 63.0
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.9e-92 343.6 328 61.9
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 7.3e-92 341.7 327 61.8
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.4e-90 337.4 248 71.0
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 5.3e-90 335.5 327 59.0
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 5.3e-90 335.5 342 59.6
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 9.0e-90 334.7 326 57.4
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 2.9e-88 329.7 287 63.1
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 2.9e-88 329.7 242 70.2
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 3.8e-88 329.3 336 58.3
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.9e-87 327.0 350 58.3
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 2.4e-87 326.6 332 58.4
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 4.2e-87 325.9 328 60.4
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 7.1e-87 325.1 347 54.8
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 9.3e-87 324.7 330 58.2
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 3.5e-86 322.8 241 70.5
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 2.3e-85 320.1 329 58.7
COL.COLO4_15124 Corchorus olitorius HOM05D004645 ORTHO05D005693 5.1e-85 318.9 216 74.5
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 8.7e-85 318.2 248 68.5
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 1.5e-84 317.4 347 57.6
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 1.6e-83 313.9 328 57.3
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 4.8e-83 312.4 329 59.0
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 8.1e-83 311.6 251 63.3
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 6.9e-82 308.5 249 65.5
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 9.0e-82 308.1 330 58.2
DCAR_010525 Daucus carota HOM05D004645 ORTHO05D005693 1.9e-79 300.4 223 70.4
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 1.3e-77 294.3 246 67.1
Haze_00365 Corylus avellana HOM05D004645 ORTHO05D005693 1.8e-77 293.9 215 71.6
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 2.3e-77 293.5 291 57.7
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 1.1e-76 291.2 329 55.6
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 9.6e-76 288.1 241 63.9
QL09p020526 Quercus lobata HOM05D004645 ORTHO05D005693 1.6e-75 287.3 214 72.9
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 8.2e-75 285.0 334 52.7
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 1.4e-74 284.3 280 57.5
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 5.8e-73 278.9 331 50.5
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 7.6e-73 278.5 404 48.5
Ca_19601_v3 Cicer arietinum L. HOM05D004645 ORTHO05D005693 1.3e-72 277.7 218 67.9
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 8.4e-72 275.0 295 59.3
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 2.5e-71 273.5 370 46.5
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 3.2e-71 273.1 253 58.9
vmacro06368 Vaccinium macrocarpon HOM05D004645 ORTHO05D005693 4.2e-71 272.7 231 67.1
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 4.6e-70 269.2 339 52.2
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 4.6e-70 269.2 335 50.4
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 6.7e-69 265.4 334 51.2
Lj3g0007707 Lotus japonicus HOM05D004645 ORTHO05D005693 4.1e-66 256.1 206 67.5
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 2.0e-65 253.8 358 47.2
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 2.9e-64 250.0 338 48.5
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 3.8e-64 249.6 348 47.7
Rhsim03G0224700 Rhododendron simsii HOM05D004645 ORTHO05D005693 7.2e-63 245.4 337 50.7
Sc08g0005180 Simmondsia chinensis HOM05D004645 ORTHO05D005693 1.2e-62 244.6 218 66.5
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 1.6e-62 244.2 337 51.3
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 3.6e-62 243.0 292 51.7
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 3.6e-62 243.0 292 51.7
Cfa016080 Carpinus fangiana HOM05D004645 ORTHO05D005693 3.6e-62 243.0 189 68.3
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 1.4e-61 241.1 333 47.1
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 1.8e-61 240.7 258 55.4
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 1.8e-61 240.7 258 55.4
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 1.8e-61 240.7 258 55.4
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 1.7e-56 224.2 250 54.0
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 2.9e-48 196.8 215 54.4
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 1.1e-47 194.9 264 43.6
TAR636G0353 Trochodendron aralioides HOM05D004645 ORTHO05D005693 4.1e-42 176.4 134 71.6
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 1.9e-39 167.5 154 61.0
FAN01G0394 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.6e-38 164.5 101 82.2
CARHR077490 Cardamine hirsuta HOM05D004645 ORTHO05D005693 1.7e-35 154.5 221 48.4
HPP92_028759 Vanilla planifolia HOM05D004645 ORTHO05D005693 4.7e-30 136.3 128 60.2
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 9.1e-26 122.1 154 39.0
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 2.0e-25 120.9 139 44.6
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 4.5e-25 119.8 132 43.9
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 4.0e-21 106.7 114 47.4
Actinidia04560 Actinidia chinensis HOM05D004645 ORTHO05D005693 5.2e-21 106.3 114 60.5
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 3.4e-20 103.6 158 36.7
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 2.2e-19 100.9 113 46.9
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 3.2e-18 97.1 129 40.3
Sabra13G0065800 Salix brachista HOM05D004645 ORTHO05D005693 1.2e-17 95.1 112 51.8
Psat0s904g0040 Pisum sativum HOM05D004645 ORTHO05D005693 1.7e-16 91.3 112 50.0
Dinv17242 Davidia involucrata HOM05D004645 ORTHO05D005693 1.1e-15 88.6 122 54.1
QL09p020516 Quercus lobata HOM05D004645 ORTHO05D005693 1.3e-11 75.1 33 97.0
FAN01G2860 Fragaria x ananassa HOM05D004645 ORTHO05D005693 2.2e-11 74.3 114 50.0
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 6.4e-11 72.8 48 66.7
Cpa.g.c34419 Carica papaya HOM05D004645 ORTHO05D005693 8.3e-11 72.4 134 38.8
Haze_00364 Corylus avellana HOM05D004645 ORTHO05D005693 7.0e-10 69.3 115 48.7
ECA075G0001 Erigeron canadensis HOM05D004645 ORTHO05D005693 7.8e-09 65.9 50 70.0
Oeu057736.1 Olea europaea HOM05D004645 ORTHO05D005693 2.1e-06 57.8 123 39.0
Os04g0392300 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 4.7e-06 56.6 114 36.0


User provided reference genes

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