Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 1.4e-32 142.5 78 100.0
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 2.1e-25 118.6 80 83.8
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 4.5e-20 100.9 74 77.0
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 4.5e-20 100.9 84 69.0
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 4.5e-20 100.9 82 70.7
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 7.7e-20 100.1 77 74.0
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 7.7e-20 100.1 84 67.9
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 5.0e-19 97.4 84 71.4
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 3.3e-18 94.7 82 65.9
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 9.5e-18 93.2 84 65.5
Nitab4.5_0002319g0020 Nicotiana tabacum HOM05D004722 ORTHO05D005453 6.1e-17 90.5 77 70.1
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 4.4e-15 84.3 74 64.9
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 1.4e-13 79.3 64 68.8
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 3.2e-13 78.2 69 65.2
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 4.1e-13 77.8 78 60.3
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.2e-12 76.3 69 66.7
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.2e-12 76.3 69 66.7
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 1.2e-12 76.3 67 67.2
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 1.2e-12 76.3 85 57.6
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 4.6e-12 74.3 66 68.2
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 5.9e-12 73.9 80 57.5
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 5.9e-12 73.9 67 67.2
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 1.3e-11 72.8 66 59.1
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 2.3e-11 72.0 64 65.6
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 2.9e-11 71.6 67 62.7
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 6.6e-11 70.5 81 55.6
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 8.6e-11 70.1 69 62.3
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 1.1e-10 69.7 69 65.2
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 1.5e-10 69.3 63 61.9
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.9e-10 68.9 66 65.2
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 1.9e-10 68.9 75 57.3
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 2.5e-10 68.6 64 65.6
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 2.5e-10 68.6 69 63.8
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 2.5e-10 68.6 70 62.9
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 2.5e-10 68.6 64 64.1
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 3.3e-10 68.2 86 51.2
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 4.3e-10 67.8 77 61.0
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 4.3e-10 67.8 76 57.9
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 4.3e-10 67.8 70 62.9
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 5.6e-10 67.4 65 61.5
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 5.6e-10 67.4 65 61.5
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 5.6e-10 67.4 80 55.0
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 5.6e-10 67.4 80 55.0
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 5.6e-10 67.4 80 55.0
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 5.6e-10 67.4 80 55.0
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 5.6e-10 67.4 80 55.0
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 5.6e-10 67.4 74 59.5
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 5.6e-10 67.4 75 54.7
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 7.3e-10 67.0 82 56.1
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 7.3e-10 67.0 64 62.5
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 9.5e-10 66.6 66 62.1
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 9.5e-10 66.6 84 53.6
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 9.5e-10 66.6 76 56.6
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 9.5e-10 66.6 67 65.7
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.2e-09 66.2 84 58.3
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 1.2e-09 66.2 77 53.2
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 2.1e-09 65.5 75 56.0
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 3.6e-09 64.7 67 58.2
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 3.6e-09 64.7 71 62.0
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 3.6e-09 64.7 77 59.7
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 4.7e-09 64.3 76 52.6
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 4.7e-09 64.3 73 56.2
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 6.2e-09 63.9 66 59.1
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 6.2e-09 63.9 68 57.4
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 6.2e-09 63.9 66 60.6
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 8.0e-09 63.5 61 60.7
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 8.0e-09 63.5 69 53.6
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 1.4e-08 62.8 67 58.2
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 1.4e-08 62.8 71 60.6
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 1.8e-08 62.4 77 53.2
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 1.8e-08 62.4 68 57.4
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 1.8e-08 62.4 74 56.8
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 2.3e-08 62.0 80 50.0
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 2.3e-08 62.0 80 50.0
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 2.3e-08 62.0 63 65.1
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 3.1e-08 61.6 69 56.5
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 3.1e-08 61.6 69 58.0
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 3.1e-08 61.6 71 60.6
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 4.0e-08 61.2 71 54.9
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 4.0e-08 61.2 74 56.8
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 4.0e-08 61.2 78 51.3
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 5.2e-08 60.8 67 56.7
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 6.8e-08 60.5 78 51.3
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 6.8e-08 60.5 64 59.4
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 8.9e-08 60.1 66 53.0
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 8.9e-08 60.1 68 54.4
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.2e-07 59.7 66 53.0
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 1.2e-07 59.7 74 52.7
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 1.2e-07 59.7 69 58.0
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.2e-07 59.7 68 52.9
QL04p001566 Quercus lobata HOM05D004722 ORTHO05D005453 1.2e-07 59.7 54 63.0
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 1.5e-07 59.3 76 51.3
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 1.5e-07 59.3 65 56.9
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 1.5e-07 59.3 76 57.9
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.5e-07 59.3 86 48.8
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 2.0e-07 58.9 77 49.4
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 2.0e-07 58.9 65 55.4
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 2.6e-07 58.5 74 54.1
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 2.6e-07 58.5 75 50.7
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 2.6e-07 58.5 75 54.7
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 9.8e-07 56.6 68 51.5
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 9.8e-07 56.6 67 55.2
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.3e-06 56.2 67 52.2
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 1.7e-06 55.8 65 53.8
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.7e-06 55.8 83 47.0
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 1.7e-06 55.8 70 57.1
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 2.9e-06 55.1 81 46.9
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 2.9e-06 55.1 63 58.7
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 3.7e-06 54.7 81 49.4
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 3.7e-06 54.7 78 46.2
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 4.9e-06 54.3 63 58.7
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 6.4e-06 53.9 57 56.1
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 6.4e-06 53.9 64 53.1
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 8.3e-06 53.5 59 52.5
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 8.3e-06 53.5 87 43.7
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 8.3e-06 53.5 87 43.7


User provided reference genes

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