Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009210g0040 Nicotiana tabacum HOM05D006991 ORTHO05D009188 0.0e+00 1308.1 642 100.0
Nitab4.5_0002160g0070 Nicotiana tabacum HOM05D006991 ORTHO05D009188 0.0e+00 1284.2 642 97.8
CAN.G78.50 Capsicum annuum HOM05D006991 ORTHO05D009188 0.0e+00 1204.9 642 90.3
PGSC0003DMG400000156 Solanum tuberosum HOM05D006991 ORTHO05D009188 0.0e+00 1201.0 643 90.2
Sopen01g038120 Solanum pennellii HOM05D006991 ORTHO05D009188 0.0e+00 1185.2 643 89.0
Peaxi162Scf00020g00011 Petunia axillaris HOM05D006991 ORTHO05D009188 0.0e+00 1178.3 664 87.0
Solyc01g094330.3 Solanum lycopersicum HOM05D006991 ORTHO05D009188 0.0e+00 1161.0 671 84.9
Cc02_g37710 Coffea canephora HOM05D006991 ORTHO05D009188 7.0e-276 953.7 637 73.8
MSTRG.28216 Avicennia marina HOM05D006991 ORTHO05D009188 1.6e-272 942.6 644 71.3
Lj9A581T68 Lonicera japonica HOM05D006991 ORTHO05D009188 4.0e-271 937.9 636 70.6
Dinv43786 Davidia involucrata HOM05D006991 ORTHO05D009188 6.8e-271 937.2 656 70.7
Migut.N01431 Erythranthe guttata HOM05D006991 ORTHO05D009188 7.0e-268 927.2 642 69.3
HanXRQChr04g0121651 Helianthus annuus HOM05D006991 ORTHO05D009188 2.3e-263 912.1 641 69.1
DCAR_015941 Daucus carota HOM05D006991 ORTHO05D009188 4.9e-261 904.4 642 68.1
GSVIVG01026850001 Vitis vinifera HOM05D006991 ORTHO05D009188 4.1e-260 901.4 643 68.9
SGA_v2.0_scaffold43G16441 Striga asiatica HOM05D006991 ORTHO05D009188 4.6e-259 897.9 650 68.2
CSS0011179 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 1.0e-258 896.7 642 69.3
ECA236G3544 Erigeron canadensis HOM05D006991 ORTHO05D009188 1.0e-258 896.7 636 69.2
SalBow5G3488 Salvia bowleyana HOM05D006991 ORTHO05D009188 2.3e-258 895.6 662 67.1
SalBow5G3803 Salvia bowleyana HOM05D006991 ORTHO05D009188 2.3e-258 895.6 662 67.1
Lsat_1_v5_gn_7_5201 Lactuca sativa HOM05D006991 ORTHO05D009188 9.5e-257 890.2 640 67.7
QL08p049512 Quercus lobata HOM05D006991 ORTHO05D009188 6.8e-255 884.0 644 68.2
TWI23G0867 Tripterygium wilfordii HOM05D006991 ORTHO05D009188 1.2e-254 883.2 657 66.2
Ciclev10019238m.g Citrus clementina HOM05D006991 ORTHO05D009188 5.8e-254 880.9 646 67.2
Nn6g33525 Nelumbo nucifera HOM05D006991 ORTHO05D009188 3.7e-253 878.2 637 66.1
MD01G1054400 Malus domestica HOM05D006991 ORTHO05D009188 8.3e-253 877.1 636 67.9
Haze_15467 Corylus avellana HOM05D006991 ORTHO05D009188 3.2e-252 875.2 639 67.8
Prupe.2G164100 Prunus persica HOM05D006991 ORTHO05D009188 5.4e-252 874.4 639 67.8
RcHm_v2.0_Chr1g0354041 Rosa chinensis HOM05D006991 ORTHO05D009188 4.6e-251 871.3 644 65.4
Potri.002G157400 Populus trichocarpa HOM05D006991 ORTHO05D009188 7.8e-251 870.5 647 66.5
Rhsim07G0017800 Rhododendron simsii HOM05D006991 ORTHO05D009188 7.8e-251 870.5 630 68.1
FvH4_7g13830 Fragaria vesca HOM05D006991 ORTHO05D009188 1.0e-250 870.2 635 66.5
FAN03G2057 Fragaria x ananassa HOM05D006991 ORTHO05D009188 5.0e-250 867.8 639 66.0
Glyma.07G073500 Glycine max HOM05D006991 ORTHO05D009188 5.0e-250 867.8 646 66.3
Hma1.2p1_0001F.1_g001590 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 7.3e-249 864.0 644 66.1
CANSAT56G3382 Cannabis sativa HOM05D006991 ORTHO05D009188 2.8e-248 862.1 641 65.8
Lj3g0006815 Lotus japonicus HOM05D006991 ORTHO05D009188 3.6e-248 861.7 654 64.8
Lalb_Chr04g0256761 Lupinus albus HOM05D006991 ORTHO05D009188 3.1e-247 858.6 640 66.6
Thecc.01G363100 Theobroma cacao HOM05D006991 ORTHO05D009188 8.9e-247 857.1 640 67.2
Medtr8g031480 Medicago truncatula HOM05D006991 ORTHO05D009188 1.5e-246 856.3 653 65.4
TPR.G4402 Trifolium pratense HOM05D006991 ORTHO05D009188 2.0e-246 855.9 643 65.6
CSS0000914 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 3.4e-246 855.1 634 67.5
FAN10G0464 Fragaria x ananassa HOM05D006991 ORTHO05D009188 3.4e-246 855.1 662 63.6
FAN06G2381 Fragaria x ananassa HOM05D006991 ORTHO05D009188 1.1e-244 850.1 673 62.4
Duzib138G0243 Durio zibethinus HOM05D006991 ORTHO05D009188 1.6e-243 846.3 643 66.3
Cfa003952 Carpinus fangiana HOM05D006991 ORTHO05D009188 1.3e-242 843.2 641 66.0
PSO063G6634 Papaver somniferum HOM05D006991 ORTHO05D009188 1.3e-242 843.2 648 64.2
VMungo0331G1855 Vigna mungo HOM05D006991 ORTHO05D009188 5.1e-242 841.3 641 65.5
COL.COLO4_12678 Corchorus olitorius HOM05D006991 ORTHO05D009188 6.6e-242 840.9 645 65.4
FAN06G3007 Fragaria x ananassa HOM05D006991 ORTHO05D009188 8.6e-242 840.5 655 63.5
FAN01G0340 Fragaria x ananassa HOM05D006991 ORTHO05D009188 1.1e-241 840.1 655 63.5
Aqoxy5G03423_Aqoxy5G03424 Aquilegia oxysepala HOM05D006991 ORTHO05D009188 3.6e-240 835.1 642 65.3
PGR042G0621 Punica granatum HOM05D006991 ORTHO05D009188 8.1e-240 833.9 647 62.1
AUR62004323 Chenopodium quinoa HOM05D006991 ORTHO05D009188 1.5e-238 829.7 655 63.2
Ah.05g176510 Amaranthus hybridus HOM05D006991 ORTHO05D009188 1.7e-237 826.2 642 63.7
Sed0028010 Sechium edule HOM05D006991 ORTHO05D009188 1.4e-236 823.2 640 63.1
Atru.chr5.484 Acer truncatum HOM05D006991 ORTHO05D009188 4.1e-236 821.6 605 65.5
vmacro13305 Vaccinium macrocarpon HOM05D006991 ORTHO05D009188 2.1e-235 819.3 688 60.9
ATR0680G083 Amborella trichopoda HOM05D006991 ORTHO05D009188 1.3e-234 816.6 644 63.4
ClCG05G001680 Citrullus lanatus HOM05D006991 ORTHO05D009188 2.5e-233 812.4 645 62.9
Gorai.001G170100 Gossypium raimondii HOM05D006991 ORTHO05D009188 1.2e-232 810.1 649 64.7
Eucgr.E00177 Eucalyptus grandis HOM05D006991 ORTHO05D009188 4.7e-232 808.1 657 61.5
CDE05G1529 Ceratophyllum demersum HOM05D006991 ORTHO05D009188 6.2e-232 807.7 646 61.8
Thhalv10007047m.g Eutrema salsugineum HOM05D006991 ORTHO05D009188 1.1e-231 807.0 646 62.5
MELO3C006127.2 Cucumis melo HOM05D006991 ORTHO05D009188 1.4e-231 806.6 636 62.7
Gohir.D07G148700 Gossypium hirsutum HOM05D006991 ORTHO05D009188 5.2e-231 804.7 649 64.3
AT1G01770 Arabidopsis thaliana HOM05D006991 ORTHO05D009188 1.5e-230 803.1 642 62.8
BolC8t52898H Brassica oleracea HOM05D006991 ORTHO05D009188 1.5e-230 803.1 639 63.1
Hund27298 Selenicereus undatus HOM05D006991 ORTHO05D002850 9.9e-230 800.4 640 63.1
AL1G10570 Arabidopsis lyrata HOM05D006991 ORTHO05D009188 3.8e-229 798.5 645 62.3
Sp1g00530 Schrenkiella parvula HOM05D006991 ORTHO05D009188 4.9e-229 798.1 633 62.6
CsaV3_3G009060 Cucumis sativus L. HOM05D006991 ORTHO05D009188 6.4e-229 797.7 633 62.6
BraA09t42261Z Brassica rapa HOM05D006991 ORTHO05D009188 9.3e-228 793.9 637 62.6
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 3.5e-227 792.0 633 62.9
Carub.0001s0044 Capsella rubella HOM05D006991 ORTHO05D009188 6.6e-226 787.7 636 61.9
Aa31LG1G11140 Aethionema arabicum HOM05D006991 ORTHO05D009188 8.7e-226 787.3 647 61.1
THA.LOC104801448 Tarenaya hassleriana HOM05D006991 ORTHO05D009188 1.9e-225 786.2 649 59.5
Sc26g0001000 Simmondsia chinensis HOM05D006991 ORTHO05D009188 9.6e-225 783.9 632 63.0
Os07g0457300 Oryza sativa ssp. japonica HOM05D006991 ORTHO05D009188 1.8e-223 779.6 640 60.3
Cpa.g.sc18.226 Carica papaya HOM05D006991 ORTHO05D009188 5.3e-223 778.1 657 60.1
Gohir.A07G142900 Gossypium hirsutum HOM05D006991 ORTHO05D009188 5.8e-222 774.6 651 61.9
Zm00001eb306550 Zea mays HOM05D006991 ORTHO05D009188 1.3e-221 773.5 645 61.2
unitig_748.g7107 Utricularia gibba HOM05D006991 ORTHO05D009188 4.9e-221 771.5 610 63.1
Psat4g154080 Pisum sativum HOM05D006991 ORTHO05D009188 8.4e-221 770.8 582 65.3
HPP92_004979 Vanilla planifolia HOM05D006991 ORTHO05D009188 2.1e-211 739.6 635 57.6
EL10Ac1g00536 Beta vulgaris HOM05D006991 ORTHO05D009188 2.5e-209 732.6 638 58.8
Hma1.2p1_0001F.1_g001600 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 4.5e-206 721.8 490 71.4
arahy.Tifrunner.gnm1.ann1.NT7Z8Q Arachis hypogaea HOM05D006991 ORTHO05D009188 7.1e-204 714.5 644 57.5
Actinidia10005 Actinidia chinensis HOM05D006991 ORTHO05D009188 4.6e-203 711.8 532 66.0
CiPaw.02G028700 Carya illinoinensis HOM05D006991 ORTHO05D009188 3.1e-191 672.5 454 70.5
arahy.Tifrunner.gnm1.ann1.JH251T Arachis hypogaea HOM05D006991 ORTHO05D009188 9.1e-183 644.4 638 53.1
Pp3c9_2540 Physcomitrium patens HOM05D006991 ORTHO05D009188 1.3e-181 640.6 619 53.3
SMO164G0214 Selaginella moellendorffii HOM05D006991 ORTHO05D009188 1.2e-179 634.0 624 53.5
MBI18_g09765_MAGBIO Magnolia biondii HOM05D006991 ORTHO05D009188 3.6e-155 552.7 503 56.5
Ca_23659_v3 Cicer arietinum L. HOM05D006991 ORTHO05D009188 1.4e-154 550.8 617 48.6
CARHR000550 Cardamine hirsuta HOM05D006991 ORTHO05D009188 5.4e-151 538.9 427 62.1
Phvul.010G096000 Phaseolus vulgaris HOM05D006991 ORTHO05D009188 1.1e-148 531.2 358 70.4
Manes.01G259800 Manihot esculenta HOM05D006991 ORTHO05D009188 7.0e-135 485.3 336 70.5
TAR375G0043 Trochodendron aralioides HOM05D006991 ORTHO05D009188 1.6e-134 484.2 330 70.3
AagrBONN_evm.TU.Sc2ySwM_344.4948 Anthoceros agrestis HOM05D006991 ORTHO05D009188 9.2e-127 458.4 466 51.5
RcHm_v2.0_Chr1g0354021 Rosa chinensis HOM05D006991 ORTHO05D009188 1.3e-101 374.8 414 50.5
EL10Ac1g02136 Beta vulgaris HOM05D006991 ORTHO05D009188 7.7e-73 279.3 266 54.5
HanXRQChr01g0021681 Helianthus annuus HOM05D006991 ORTHO05D009188 6.3e-67 259.6 201 64.2
Sabra02G0125100 Salix brachista HOM05D006991 ORTHO05D009188 1.1e-66 258.8 197 64.5
EL10Ac3g06779 Beta vulgaris HOM05D006991 ORTHO05D009188 3.8e-64 250.4 175 64.0
QL09p021383 Quercus lobata HOM05D006991 ORTHO05D009188 2.8e-51 207.6 163 62.0
Ca_23662_v3 Cicer arietinum L. HOM05D006991 ORTHO05D028457 4.5e-49 200.3 150 66.0
CAN.G1527.6 Capsicum annuum HOM05D006991 ORTHO05D028457 2.9e-48 197.6 118 81.4
AUR62033321 Chenopodium quinoa HOM05D006991 ORTHO05D028457 2.9e-48 197.6 129 70.5
AUR62003727 Chenopodium quinoa HOM05D001417 ORTHO05D001496 2.1e-46 191.4 122 73.8
EL10Ac5g11247 Beta vulgaris HOM05D006991 ORTHO05D009188 8.8e-45 186.0 190 52.1
PSO782G3099 Papaver somniferum HOM05D006991 ORTHO05D028457 4.9e-35 153.7 177 46.3
HanXRQChr03g0092981 Helianthus annuus HOM05D006991 ORTHO05D226355 2.9e-32 144.4 111 63.1
HanXRQChr01g0025441 Helianthus annuus HOM05D006991 ORTHO05D009188 2.1e-30 138.3 74 82.4
CAN.G226.8 Capsicum annuum HOM05D006991 ORTHO05D000001 1.3e-27 129.0 64 92.2
AUR62036784 Chenopodium quinoa HOM05D006991 ORTHO05D138340 5.8e-20 103.6 84 56.0


User provided reference genes

Program Settings