Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009175g0010 Nicotiana tabacum HOM05D005270 ORTHO05D006239 1.3e-249 865.9 449 100.0
Solyc08g079070.2 Solanum lycopersicum HOM05D005270 ORTHO05D006239 7.0e-198 694.1 426 85.4
PGSC0003DMG400004791 Solanum tuberosum HOM05D005270 ORTHO05D006239 5.5e-195 684.5 407 87.7
Sopen08g027530 Solanum pennellii HOM05D005270 ORTHO05D006239 6.1e-194 681.0 407 87.2
Nitab4.5_0000993g0070 Nicotiana tabacum HOM05D005270 ORTHO05D006239 1.0e-193 680.2 432 83.3
CAN.G1217.18 Capsicum annuum HOM05D000486 ORTHO05D000375 1.8e-190 669.5 403 85.9
Peaxi162Scf00002g00815 Petunia axillaris HOM05D005270 ORTHO05D006239 1.5e-187 659.8 407 83.3
Hma1.2p1_1414F.1_g281890 Hydrangea macrophylla HOM05D005270 ORTHO05D006239 6.6e-172 607.8 408 76.0
Dinv21601 Davidia involucrata HOM05D005270 ORTHO05D006239 8.6e-172 607.4 408 76.2
Cc08_g12920 Coffea canephora HOM05D005270 ORTHO05D006239 2.8e-170 602.4 400 76.5
Lj2A211T58 Lonicera japonica HOM05D005270 ORTHO05D006239 4.0e-169 598.6 409 74.1
MSTRG.25537 Avicennia marina HOM05D005270 ORTHO05D006239 5.2e-169 598.2 408 74.8
Oeu038010.1 Olea europaea HOM05D005270 ORTHO05D006239 4.4e-168 595.1 408 74.3
CSS0023019 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 5.8e-168 594.7 408 75.0
CSS0046114 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 5.8e-168 594.7 408 75.0
Actinidia27450 Actinidia chinensis HOM05D005270 ORTHO05D006239 2.4e-166 589.3 408 74.5
SGA_v2.0_scaffold144G35994 Striga asiatica HOM05D005270 ORTHO05D003965 3.2e-166 589.0 406 73.6
Actinidia05188 Actinidia chinensis HOM05D005270 ORTHO05D006239 9.2e-166 587.4 408 74.3
Dinv39103 Davidia involucrata HOM05D000201 ORTHO05D001515 2.8e-162 575.9 396 75.3
Rhsim07G0104300 Rhododendron simsii HOM05D005270 ORTHO05D006239 3.1e-161 572.4 409 72.4
Migut.E01048 Erythranthe guttata HOM05D005270 ORTHO05D006239 1.2e-160 570.5 408 71.8
Duzib068G0557 Durio zibethinus HOM05D005270 ORTHO05D006239 3.7e-159 565.5 402 73.4
CiPaw.11G150400 Carya illinoinensis HOM05D005270 ORTHO05D006239 4.1e-158 562.0 408 71.3
ClCG01G003850 Citrullus lanatus HOM05D005270 ORTHO05D006239 6.0e-157 558.1 406 71.7
GSVIVG01004774001 Vitis vinifera HOM05D005270 ORTHO05D006239 7.8e-157 557.8 408 71.6
MD06G1067000 Malus domestica HOM05D005270 ORTHO05D006239 1.3e-156 557.0 408 72.5
CANSAT21G2027 Cannabis sativa HOM05D005270 ORTHO05D006239 5.1e-156 555.1 410 70.7
Gohir.A03G010000 Gossypium hirsutum HOM05D005270 ORTHO05D006239 6.6e-156 554.7 402 71.9
Sed0019529 Sechium edule HOM05D005270 ORTHO05D006239 8.6e-156 554.3 414 70.3
GSVIVG01001274001 Vitis vinifera HOM05D005270 ORTHO05D006239 8.6e-156 554.3 408 71.3
Eucgr.D02030 Eucalyptus grandis HOM05D005270 ORTHO05D006239 1.5e-155 553.5 418 69.6
Atru.chr9.1379_Atru.chr9.1380 Acer truncatum HOM05D005270 ORTHO05D006239 1.9e-155 553.1 408 72.1
Gohir.D03G160700 Gossypium hirsutum HOM05D005270 ORTHO05D006239 2.5e-155 552.7 407 72.0
QL12p013868 Quercus lobata HOM05D005270 ORTHO05D006239 2.5e-155 552.7 411 71.8
MELO3C005559.2 Cucumis melo HOM05D005270 ORTHO05D006239 3.3e-155 552.4 410 70.5
PGR031G3926 Punica granatum HOM05D005270 ORTHO05D006239 3.3e-155 552.4 411 70.8
RcHm_v2.0_Chr7g0202331 Rosa chinensis HOM05D005270 ORTHO05D006239 3.3e-155 552.4 408 71.1
vmacro14106 Vaccinium macrocarpon HOM05D005270 ORTHO05D006239 3.3e-155 552.4 444 66.7
FvH4_5g00280 Fragaria vesca HOM05D005270 ORTHO05D006239 5.6e-155 551.6 408 71.3
FAN08G1405 Fragaria x ananassa HOM05D005270 ORTHO05D006239 5.6e-155 551.6 408 71.3
FAN18G1040 Fragaria x ananassa HOM05D005270 ORTHO05D006239 5.6e-155 551.6 408 71.3
Thecc.03G257000 Theobroma cacao HOM05D005270 ORTHO05D006239 1.6e-154 550.1 405 71.6
SalBow1G0839 Salvia bowleyana HOM05D005270 ORTHO05D006239 3.6e-154 548.9 386 73.6
CsaV3_5G003980 Cucumis sativus L. HOM05D005270 ORTHO05D006239 6.2e-154 548.1 410 70.0
Sc01g0009340 Simmondsia chinensis HOM05D005270 ORTHO05D006239 6.2e-154 548.1 408 70.3
Prupe.5G075500 Prunus persica HOM05D005270 ORTHO05D006239 8.1e-154 547.7 408 71.6
FAN04G3018 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.1e-153 547.4 413 70.5
TWI81G0718 Tripterygium wilfordii HOM05D005270 ORTHO05D006239 1.1e-153 547.4 409 70.2
Gohir.A09G195500 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.8e-153 546.6 408 70.3
Gorai.006G212700 Gossypium raimondii HOM05D005270 ORTHO05D006239 1.8e-153 546.6 402 70.9
Ciclev10020501m.g Citrus clementina HOM05D005270 ORTHO05D006239 8.9e-153 544.3 408 70.3
FAN13G2928 Fragaria x ananassa HOM05D005270 ORTHO05D006239 8.9e-153 544.3 408 70.3
unitig_0.g1234 Utricularia gibba HOM05D005270 ORTHO05D006239 8.9e-153 544.3 409 68.2
Gohir.D09G190100 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.2e-152 543.9 402 70.6
Potri.001G120400 Populus trichocarpa HOM05D005270 ORTHO05D006239 1.5e-152 543.5 415 70.8
Manes.01G076600 Manihot esculenta HOM05D005270 ORTHO05D006239 5.8e-152 541.6 409 69.9
Sabra01G0092800 Salix brachista HOM05D005270 ORTHO05D006239 7.6e-152 541.2 415 70.1
Glyma.05G056400 Glycine max HOM05D005270 ORTHO05D006239 1.1e-150 537.3 412 68.0
HanXRQChr03g0087851 Helianthus annuus HOM05D005270 ORTHO05D006239 7.1e-150 534.6 408 68.1
MBI04_g37584_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 9.2e-150 534.3 405 69.4
Lsat_1_v5_gn_6_90321 Lactuca sativa HOM05D005270 ORTHO05D006239 6.0e-149 531.6 408 69.1
Lj4g0020394 Lotus japonicus HOM05D005270 ORTHO05D006239 1.1e-147 527.3 369 72.9
arahy.Tifrunner.gnm1.ann1.9F7ELE Arachis hypogaea HOM05D005270 ORTHO05D006239 1.5e-147 526.9 412 67.5
Lalb_Chr05g0225581 Lupinus albus HOM05D005270 ORTHO05D006239 2.5e-147 526.2 411 67.6
TAR629G2769 Trochodendron aralioides HOM05D005270 ORTHO05D006239 3.3e-147 525.8 350 76.0
arahy.Tifrunner.gnm1.ann1.VW53Z5 Arachis hypogaea HOM05D005270 ORTHO05D006239 1.2e-146 523.9 412 67.2
Aqoxy7G00723 Aquilegia oxysepala HOM05D005270 ORTHO05D006239 6.2e-146 521.5 402 67.7
Glyma.17G138600 Glycine max HOM05D005270 ORTHO05D006239 1.8e-145 520.0 411 66.4
Carub.0001s1190 Capsella rubella HOM05D005270 ORTHO05D006239 2.4e-145 519.6 418 65.8
Psat4g070360 Pisum sativum HOM05D005270 ORTHO05D006239 5.3e-145 518.5 408 66.9
Ca_25339_v3 Cicer arietinum L. HOM05D005270 ORTHO05D006239 9.0e-145 517.7 402 67.7
PSO170G6680 Papaver somniferum HOM05D005270 ORTHO05D006239 1.5e-144 516.9 409 68.7
Cpa.g.sc29.127 Carica papaya HOM05D005270 ORTHO05D006239 2.0e-144 516.5 508 57.1
Medtr4g101620 Medicago truncatula HOM05D005270 ORTHO05D006239 3.4e-144 515.8 411 66.4
CARHR012530 Cardamine hirsuta HOM05D005270 ORTHO05D006239 5.8e-144 515.0 418 65.8
Aa31LG1G2400 Aethionema arabicum HOM05D005270 ORTHO05D006239 2.2e-143 513.1 417 65.2
HPP92_022434 Vanilla planifolia HOM05D005270 ORTHO05D006239 3.8e-143 512.3 395 66.6
PSO017G6911 Papaver somniferum HOM05D005270 ORTHO05D006239 6.4e-143 511.5 406 67.7
AL1G23510 Arabidopsis lyrata HOM05D005270 ORTHO05D006239 1.1e-142 510.8 418 64.6
A06p09330 Brassica napus HOM05D005270 ORTHO05D006239 3.2e-142 509.2 419 64.7
Thhalv10007790m.g Eutrema salsugineum HOM05D005270 ORTHO05D006239 5.4e-142 508.4 417 64.5
C05p11010 Brassica napus HOM05D005270 ORTHO05D006239 1.6e-141 506.9 418 64.4
Sp1g10840 Schrenkiella parvula HOM05D005270 ORTHO05D006239 6.0e-141 505.0 418 64.1
BolC5t29844H Brassica oleracea HOM05D005270 ORTHO05D006239 1.0e-140 504.2 418 64.1
ATR1152G004 Amborella trichopoda HOM05D005270 ORTHO05D006239 1.3e-140 503.8 363 69.7
THA.LOC104809459 Tarenaya hassleriana HOM05D005270 ORTHO05D006239 1.7e-140 503.4 417 65.5
BraA06t24120Z Brassica rapa HOM05D005270 ORTHO05D006239 3.9e-140 502.3 422 63.3
AT1G12230 Arabidopsis thaliana HOM05D005270 ORTHO05D006239 6.6e-140 501.5 438 62.1
TPR.G37612 Trifolium pratense HOM05D005270 ORTHO05D006239 6.6e-140 501.5 412 66.0
CDE12G0422 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 2.8e-138 496.1 408 64.7
DCAR_006814 Daucus carota HOM05D005270 ORTHO05D006239 1.1e-137 494.2 405 65.7
ECA240G0014 Erigeron canadensis HOM05D000201 ORTHO05D006239 3.1e-137 492.7 411 64.0
AUR62007475 Chenopodium quinoa HOM05D005270 ORTHO05D006239 6.7e-132 474.9 378 67.5
Duzib205G1833 Durio zibethinus HOM05D005270 ORTHO05D006239 1.6e-130 470.3 406 63.8
Zm00001eb172680 Zea mays HOM05D005270 ORTHO05D006239 8.1e-130 468.0 407 62.4
EL10Ac5g13010 Beta vulgaris HOM05D005270 ORTHO05D006239 4.0e-129 465.7 415 61.9
Phvul.003G218000 Phaseolus vulgaris HOM05D005270 ORTHO05D006239 3.2e-126 456.1 414 59.4
VMungo0251G3554 Vigna mungo HOM05D005270 ORTHO05D006239 5.5e-126 455.3 316 72.5
AagrBONN_evm.TU.Sc2ySwM_369.586 Anthoceros agrestis HOM05D005270 ORTHO05D006239 1.3e-124 450.7 401 59.6
Pp3c15_6350 Physcomitrium patens HOM05D005270 ORTHO05D006239 9.6e-123 444.5 352 63.9
SalBow1G5553 Salvia bowleyana HOM05D005270 ORTHO05D006239 2.1e-122 443.4 424 58.3
COL.COLO4_37215 Corchorus olitorius HOM05D005270 ORTHO05D006239 4.2e-118 429.1 287 73.9
BcaC05g25195 Brassica carinata HOM05D005270 ORTHO05D006239 1.5e-115 420.6 381 59.3
CBR_g37411 Chara braunii HOM05D005270 ORTHO05D006239 5.5e-102 375.6 342 55.6
Sed0011689 Sechium edule HOM05D005270 ORTHO05D006239 2.8e-82 310.1 245 67.8
Psat5g235160 Pisum sativum HOM05D005270 ORTHO05D006239 3.2e-78 296.6 267 60.7
Psat5g232960 Pisum sativum HOM05D005270 ORTHO05D006239 8.8e-76 288.5 267 58.8
Mapoly0029s0033 Marchantia polymorpha HOM05D005270 ORTHO05D006239 1.3e-71 274.6 218 61.9
CDE04G1696 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 1.0e-68 265.0 223 64.1
Os08g0154300 Oryza sativa ssp. japonica HOM05D005270 ORTHO05D006239 6.3e-66 255.8 226 61.1
Haze_07851 Corylus avellana HOM05D005270 ORTHO05D006239 2.7e-56 223.8 264 50.0
Mapoly0029s0029 Marchantia polymorpha HOM05D005270 ORTHO05D006239 6.0e-56 222.6 207 55.1
Gorai.N027100 Gossypium raimondii HOM05D005270 ORTHO05D006239 7.8e-56 222.2 169 67.5
Atru.chr9.1382 Acer truncatum HOM05D005270 ORTHO05D006239 4.7e-53 213.0 171 70.2
DCAR_004923 Daucus carota HOM05D005270 ORTHO05D006239 8.9e-52 208.8 238 51.3
CDE04G2727 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 1.9e-49 201.1 209 53.1
SEGI_36758 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 9.2e-41 172.2 128 67.2
SEGI_05849 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 2.7e-40 170.6 100 80.0
Cre14.g630847 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 5.6e-38 162.9 342 33.6
Gorai.003G169200 Gossypium raimondii HOM05D005270 ORTHO05D006239 1.8e-36 157.9 145 62.8
PRCOL_00004111 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 2.4e-33 147.5 219 36.5
FAN11G3467 Fragaria x ananassa HOM05D005270 ORTHO05D006239 3.5e-32 143.7 166 50.0
Cre01.g032650 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 4.6e-32 143.3 355 30.1
FAN28G1011 Fragaria x ananassa HOM05D005270 ORTHO05D006239 4.6e-32 143.3 166 50.0
MCO13G140 Micromonas commoda HOM05D005270 ORTHO05D006239 1.0e-31 142.1 266 33.1
AUR62039933 Chenopodium quinoa HOM05D005270 ORTHO05D006239 2.4e-28 131.0 120 58.3
Atru.chr9.1383 Acer truncatum HOM05D005270 ORTHO05D006239 5.3e-28 129.8 120 57.5
SEGI_03700 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 7.6e-27 125.9 118 55.9
PRCOL_00004269 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 9.6e-22 109.0 256 30.9
RcHm_v2.0_Chr6g0270571 Rosa chinensis HOM05D005270 ORTHO05D006239 8.1e-21 105.9 78 67.9
BcaC07g38600 Brassica carinata HOM05D000238 ORTHO05D037998 9.9e-19 99.0 82 64.6
CAN.G1488.1 Capsicum annuum HOM05D005270 ORTHO05D006239 2.2e-18 97.8 131 44.3
RcHm_v2.0_Chr6g0254981 Rosa chinensis HOM05D005270 ORTHO05D006239 2.9e-18 97.4 58 81.0
CSS0018551 Camellia sinensis var. sinensis HOM05D000691 ORTHO05D000378 3.8e-18 97.1 62 72.6
CAN.G605.8 Capsicum annuum HOM05D005270 ORTHO05D006239 8.4e-18 95.9 51 86.3
FAN04G2435 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.4e-17 94.4 79 62.0
MBI03_g13472_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 5.4e-17 93.2 99 51.5
Ca_29061_v3 Cicer arietinum L. HOM05D001546 ORTHO05D002908 1.2e-16 92.0 141 34.8
GSVIVG01028518001 Vitis vinifera HOM05D005270 ORTHO05D006239 4.6e-16 90.1 49 81.6
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 6.7e-15 86.3 53 77.4
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 8.7e-15 85.9 67 62.7
FAN14G3934 Fragaria x ananassa HOM05D000617 ORTHO05D000478 2.5e-14 84.3 71 62.0
FAN23G0587 Fragaria x ananassa HOM05D016072 ORTHO05D006239 2.5e-14 84.3 71 62.0
PRCOL_00005862 Prasinoderma coloniale HOM05D005270 ORTHO05D333221 3.3e-14 84.0 189 31.2
MBI14_g06401_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 7.4e-14 82.8 51 78.4
MBI15_g47610_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 9.6e-14 82.4 50 80.0
SalBow1G3426 Salvia bowleyana HOM05D005270 ORTHO05D006239 1.6e-13 81.6 50 70.0
FAN26G2512 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.8e-13 80.9 52 75.0
FAN10G1808 Fragaria x ananassa HOM05D016072 ORTHO05D006239 1.2e-11 75.5 67 59.7
FAN23G1777 Fragaria x ananassa HOM05D016072 ORTHO05D006239 1.2e-11 75.5 67 59.7
MBI18_g46779_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D004199 7.1e-09 66.2 49 67.3
MBI16_g06311_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 1.0e-07 62.4 40 75.0
BcaC07g41719 Brassica carinata HOM05D005270 ORTHO05D039702 2.3e-07 61.2 50 68.0
BolC8t52299H Brassica oleracea HOM05D005270 ORTHO05D039702 2.3e-07 61.2 50 68.0


User provided reference genes

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