Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009153g0010 Nicotiana tabacum HOM05D003025 ORTHO05D003305 3.6e-311 1070.8 589 100.0
Sopen05g006590 Solanum pennellii HOM05D003025 ORTHO05D003305 1.0e-180 637.5 585 67.2
Peaxi162Scf00188g01025 Petunia axillaris HOM05D003025 ORTHO05D003305 1.7e-175 620.2 591 67.2
PGSC0003DMG400025716 Solanum tuberosum HOM05D003025 ORTHO05D003305 1.2e-173 614.0 609 65.0
Solyc05g011830.4 Solanum lycopersicum HOM05D003025 ORTHO05D003305 1.0e-119 434.9 337 76.0
Peaxi162Scf00026g00314 Petunia axillaris HOM05D003025 ORTHO05D003305 2.7e-117 426.8 646 43.0
PGSC0003DMG400001936 Solanum tuberosum HOM05D003025 ORTHO05D003305 2.6e-115 420.2 589 46.2
Sopen04g001270 Solanum pennellii HOM05D003025 ORTHO05D003305 1.1e-113 414.8 590 45.6
Solyc04g005290.3 Solanum lycopersicum HOM05D003025 ORTHO05D003305 1.9e-110 404.1 590 44.9
Nitab4.5_0001071g0040 Nicotiana tabacum HOM05D003025 ORTHO05D003305 1.1e-107 394.8 593 45.5
Nitab4.5_0002491g0030 Nicotiana tabacum HOM05D003025 ORTHO05D003305 4.4e-99 366.3 610 43.3
Nitab4.5_0003339g0090 Nicotiana tabacum HOM05D003025 ORTHO05D003305 6.3e-98 362.5 608 41.9
Nitab4.5_0001196g0010 Nicotiana tabacum HOM05D003025 ORTHO05D003305 7.7e-96 355.5 669 38.4
PGSC0003DMG400025718 Solanum tuberosum HOM05D003025 ORTHO05D003305 2.8e-69 267.3 291 61.2
Sopen01g005700 Solanum pennellii HOM05D003025 ORTHO05D051140 8.4e-50 202.6 619 31.5
Cc11_g11550 Coffea canephora HOM05D003025 ORTHO05D003305 7.1e-49 199.5 626 32.7
Solyc01g010140.1 Solanum lycopersicum HOM05D003025 ORTHO05D051140 2.4e-44 184.5 615 31.2
Dinv15582 Davidia involucrata HOM05D003025 ORTHO05D003305 4.4e-43 180.3 466 34.3
Dinv34020 Davidia involucrata HOM05D003025 ORTHO05D003305 7.8e-40 169.5 438 33.8
Oeu003749.3 Olea europaea HOM05D003025 ORTHO05D003305 3.9e-39 167.2 637 29.7
Oeu062245.1 Olea europaea HOM05D003025 ORTHO05D003305 1.2e-35 155.6 599 28.9
Lj6A773T133 Lonicera japonica HOM05D003025 ORTHO05D003305 4.5e-35 153.7 626 28.3
TAR622G0187 Trochodendron aralioides HOM05D003025 ORTHO05D003305 2.2e-34 151.4 385 32.2
CSS0010260 Camellia sinensis var. sinensis HOM05D003025 ORTHO05D003305 3.8e-34 150.6 486 28.8
Hma1.2p1_0428F.1_g150820 Hydrangea macrophylla HOM05D003025 ORTHO05D003305 1.9e-33 148.3 493 30.6
CANSAT64G2528 Cannabis sativa HOM05D003025 ORTHO05D003305 2.7e-32 144.4 515 29.7
TAR374G0527 Trochodendron aralioides HOM05D003025 ORTHO05D003305 2.3e-31 141.4 416 30.0
Actinidia19904 Actinidia chinensis HOM05D003025 ORTHO05D003305 6.2e-29 133.3 423 30.7
Lj3A1027T87 Lonicera japonica HOM05D003025 ORTHO05D003305 6.2e-29 133.3 469 30.3
MSTRG.13475 Avicennia marina HOM05D003025 ORTHO05D003305 3.1e-28 131.0 679 25.5
CiPaw.05G121600 Carya illinoinensis HOM05D003025 ORTHO05D003305 4.0e-28 130.6 431 27.1
GSVIVG01010102001 Vitis vinifera HOM05D003025 ORTHO05D003305 6.9e-28 129.8 448 29.7
Oeu021806.1 Olea europaea HOM05D003025 ORTHO05D003305 2.9e-26 124.4 667 25.8
vmacro01298 Vaccinium macrocarpon HOM05D003025 ORTHO05D003305 1.4e-25 122.1 401 32.2
TWI31G1177 Tripterygium wilfordii HOM05D003025 ORTHO05D003305 1.2e-24 119.0 469 29.9
Actinidia07767 Actinidia chinensis HOM05D003025 ORTHO05D003305 1.6e-24 118.6 598 24.6
Actinidia31928 Actinidia chinensis HOM05D003025 ORTHO05D003305 2.7e-24 117.9 422 28.9
Rhsim09G0122100 Rhododendron simsii HOM05D003025 ORTHO05D003305 4.6e-24 117.1 413 29.1
Rhsim12G0071300 Rhododendron simsii HOM05D003025 ORTHO05D003305 4.6e-24 117.1 424 32.1
Migut.L01161 Erythranthe guttata HOM05D003025 ORTHO05D003305 6.0e-24 116.7 622 26.4
Gorai.005G147700 Gossypium raimondii HOM05D003025 ORTHO05D003305 7.9e-24 116.3 464 29.5
CiPaw.06G095000 Carya illinoinensis HOM05D003025 ORTHO05D003305 2.3e-23 114.8 462 26.4
Gohir.D02G131800 Gossypium hirsutum HOM05D003025 ORTHO05D003305 3.9e-23 114.0 464 29.5
Gohir.A03G106600 Gossypium hirsutum HOM05D003025 ORTHO05D003305 5.1e-23 113.6 452 29.9
Gohir.D13G085500 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.5e-22 112.1 472 27.1
Gorai.013G097400 Gossypium raimondii HOM05D003025 ORTHO05D003305 2.5e-22 111.3 489 27.8
COL.COLO4_27800 Corchorus olitorius HOM05D003025 ORTHO05D003305 3.3e-22 110.9 469 26.7
vmacro10474 Vaccinium macrocarpon HOM05D003025 ORTHO05D003305 7.4e-22 109.8 464 29.1
PGR102G2660 Punica granatum HOM05D003025 ORTHO05D003305 9.6e-22 109.4 453 26.7
Nn4g23540 Nelumbo nucifera HOM05D003025 ORTHO05D003305 2.1e-21 108.2 414 29.7
Sed0016639 Sechium edule HOM05D003025 ORTHO05D003305 2.8e-21 107.8 451 27.3
ClCG08G010610 Citrullus lanatus HOM05D003025 ORTHO05D003305 1.8e-20 105.1 429 29.1
Sc04g0007330 Simmondsia chinensis HOM05D003025 ORTHO05D003305 9.0e-20 102.8 460 26.7
Gohir.A13G088100 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.5e-19 102.1 453 26.7
TWI79G0747 Tripterygium wilfordii HOM05D003025 ORTHO05D003305 1.5e-19 102.1 466 27.0
Oeu024157.1 Olea europaea HOM05D003025 ORTHO05D003305 2.6e-19 101.3 259 34.4
Thecc.02G322700 Theobroma cacao HOM05D003025 ORTHO05D003305 2.6e-19 101.3 488 26.0
Manes.14G090300 Manihot esculenta HOM05D003025 ORTHO05D003305 3.4e-19 100.9 433 28.9
Duzib248G1661 Durio zibethinus HOM05D003025 ORTHO05D003305 4.5e-19 100.5 487 27.3
THA.LOC104824052 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 5.8e-19 100.1 417 28.8
Actinidia13406 Actinidia chinensis HOM05D003025 ORTHO05D003305 1.3e-18 99.0 353 28.0
ClCG05G023550 Citrullus lanatus HOM05D003025 ORTHO05D003305 1.7e-18 98.6 462 26.2
Manes.06G079500 Manihot esculenta HOM05D003025 ORTHO05D003305 1.7e-18 98.6 450 26.4
MSTRG.7727 Avicennia marina HOM05D003025 ORTHO05D003305 3.8e-18 97.4 508 27.8
THA.LOC104805213 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 3.8e-18 97.4 473 28.8
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 8.4e-18 96.3 258 31.4
HanXRQChr12g0365071 Helianthus annuus HOM05D003025 ORTHO05D003305 8.4e-18 96.3 418 27.3
Dinv38641 Davidia involucrata HOM05D003025 ORTHO05D003305 1.4e-17 95.5 433 27.0
Migut.E00253 Erythranthe guttata HOM05D003025 ORTHO05D003305 1.4e-17 95.5 649 28.5
CsaV3_5G033470 Cucumis sativus L. HOM05D003025 ORTHO05D003305 2.5e-17 94.7 421 27.3
Sed0017206 Sechium edule HOM05D003025 ORTHO05D003305 2.5e-17 94.7 459 27.2
HanXRQChr08g0215591 Helianthus annuus HOM05D003025 ORTHO05D003305 3.2e-17 94.4 536 24.3
Haze_11858 Corylus avellana HOM05D003025 ORTHO05D003305 4.2e-17 94.0 476 24.6
EL10Ac6g14672 Beta vulgaris HOM05D003025 ORTHO05D003305 9.3e-17 92.8 450 27.3
PSO063G1603 Papaver somniferum HOM05D003025 ORTHO05D003305 1.2e-16 92.4 422 24.9
CsaV3_6G033910 Cucumis sativus L. HOM05D003025 ORTHO05D003305 6.1e-16 90.1 399 25.6
Duzib251G0179 Durio zibethinus HOM05D003025 ORTHO05D003305 2.3e-15 88.2 483 24.6
MELO3C011401.2 Cucumis melo HOM05D003025 ORTHO05D003305 3.0e-15 87.8 400 24.5
Oeu055083.2 Olea europaea HOM05D003025 ORTHO05D003305 5.1e-15 87.0 364 27.7
Gohir.D12G162800 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.5e-14 85.5 447 26.6
AT2G03810 Arabidopsis thaliana HOM05D003025 ORTHO05D003305 1.9e-14 85.1 414 29.0
Potri.008G111800 Populus trichocarpa HOM05D003025 ORTHO05D003305 2.5e-14 84.7 443 26.9
BolC7t43953H Brassica oleracea HOM05D003025 ORTHO05D003305 3.3e-14 84.3 422 28.9
BcaC06g31142 Brassica carinata HOM05D003025 ORTHO05D003305 4.3e-14 84.0 424 28.8
DCAR_030058 Daucus carota HOM05D003025 ORTHO05D003305 5.7e-14 83.6 432 27.5
Aa31LG2G6910 Aethionema arabicum HOM05D003025 ORTHO05D003305 7.4e-14 83.2 398 27.4
Carub.0005s0297 Capsella rubella HOM05D003025 ORTHO05D003305 7.4e-14 83.2 435 26.0
Sed0001557 Sechium edule HOM05D003025 ORTHO05D003305 7.4e-14 83.2 404 26.5
Ah.03g138600 Amaranthus hybridus HOM05D003025 ORTHO05D003305 9.7e-14 82.8 458 27.1
CSS0010060 Camellia sinensis var. sinensis HOM05D003025 ORTHO05D003305 9.7e-14 82.8 390 29.0
Gorai.008G175400 Gossypium raimondii HOM05D003025 ORTHO05D003305 9.7e-14 82.8 444 25.9
PSO782G5508 Papaver somniferum HOM05D003025 ORTHO05D003305 9.7e-14 82.8 418 25.1
arahy.Tifrunner.gnm1.ann1.161SS5 Arachis hypogaea HOM05D003025 ORTHO05D003305 1.3e-13 82.4 406 27.6
Gohir.A12G159500 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.3e-13 82.4 433 26.6
AL5G13600 Arabidopsis lyrata HOM05D003025 ORTHO05D003305 1.6e-13 82.0 406 27.1
Sp2g14630 Schrenkiella parvula HOM05D003025 ORTHO05D003305 4.8e-13 80.5 403 25.6
Sc11g0002650 Simmondsia chinensis HOM05D003025 ORTHO05D003305 4.8e-13 80.5 423 25.1
VMungo1215G0401 Vigna mungo HOM05D003025 ORTHO05D003305 4.8e-13 80.5 407 26.3
BcaC04g21446 Brassica carinata HOM05D003025 ORTHO05D003305 6.3e-13 80.1 397 25.9
MD13G1056500 Malus domestica HOM05D003025 ORTHO05D003305 6.3e-13 80.1 249 29.3
Eucgr.G02421 Eucalyptus grandis HOM05D003025 ORTHO05D003305 8.2e-13 79.7 473 24.7
Nitab4.5_0000027g0390 Nicotiana tabacum HOM05D003025 ORTHO05D003305 1.4e-12 79.0 57 70.2
Sabra08G0084400 Salix brachista HOM05D003025 ORTHO05D003305 1.4e-12 79.0 469 25.8
C09p31660 Brassica napus HOM05D003025 ORTHO05D003305 5.3e-12 77.0 397 25.7
BolC9t56021H Brassica oleracea HOM05D003025 ORTHO05D003305 5.3e-12 77.0 397 25.7
Glyma.02G122700 Glycine max HOM05D003025 ORTHO05D003305 6.9e-12 76.6 399 26.6
MBI14_g31150_MAGBIO Magnolia biondii HOM05D003025 ORTHO05D003305 6.9e-12 76.6 470 24.9
arahy.Tifrunner.gnm1.ann1.8UFH9N Arachis hypogaea HOM05D003025 ORTHO05D003305 9.0e-12 76.3 405 26.7
ECA233G1104 Erigeron canadensis HOM05D003025 ORTHO05D003305 1.2e-11 75.9 497 28.2
Lsat_1_v5_gn_8_37061 Lactuca sativa HOM05D003025 ORTHO05D003305 1.2e-11 75.9 443 26.6
Prupe.1G293500 Prunus persica HOM05D003025 ORTHO05D003305 1.2e-11 75.9 492 23.4
MBI15_g31908_MAGBIO Magnolia biondii HOM05D003025 ORTHO05D003305 2.6e-11 74.7 396 26.0
MSTRG.780 Avicennia marina HOM05D003025 ORTHO05D003305 3.4e-11 74.3 228 31.1
BraA06t27196Z Brassica rapa HOM05D003025 ORTHO05D003305 5.9e-11 73.6 424 28.1
A06p42840 Brassica napus HOM05D003025 ORTHO05D003305 1.7e-10 72.0 397 27.0
CARHR146220 Cardamine hirsuta HOM05D003025 ORTHO05D003305 2.9e-10 71.2 377 24.9
Potri.010G138100 Populus trichocarpa HOM05D003025 ORTHO05D003305 1.1e-09 69.3 471 24.6
SGA_v2.0_scaffold16G07826 Striga asiatica HOM05D003025 ORTHO05D003305 1.1e-09 69.3 459 25.7
Glyma.01G064900 Glycine max HOM05D003025 ORTHO05D003305 1.4e-09 68.9 490 25.5
SGA_v2.0_scaffold59G20657 Striga asiatica HOM05D003025 ORTHO05D003305 1.4e-09 68.9 457 27.1
Aqoxy3G03750 Aquilegia oxysepala HOM05D003025 ORTHO05D003305 1.9e-09 68.6 460 22.6
Phvul.003G038300 Phaseolus vulgaris HOM05D003025 ORTHO05D003305 1.9e-09 68.6 454 23.6
VMungo0251G3127 Vigna mungo HOM05D003025 ORTHO05D003305 1.9e-09 68.6 386 25.1
RcHm_v2.0_Chr4g0437341 Rosa chinensis HOM05D003025 ORTHO05D003305 3.2e-09 67.8 131 36.6
AUR62007872 Chenopodium quinoa HOM05D003025 ORTHO05D003305 7.2e-09 66.6 469 24.3
MSTRG.781 Avicennia marina HOM05D003025 ORTHO05D003305 9.4e-09 66.2 160 32.5
Phvul.003G280500 Phaseolus vulgaris HOM05D003025 ORTHO05D003305 9.4e-09 66.2 384 24.5
BcaB07g30644 Brassica carinata HOM05D003025 ORTHO05D003305 2.7e-08 64.7 380 25.8
TPR.G38556 Trifolium pratense HOM05D003025 ORTHO05D003305 2.7e-08 64.7 403 24.3
unitig_22.g5562 Utricularia gibba HOM05D003025 ORTHO05D003305 2.7e-08 64.7 434 26.5
AUR62003057 Chenopodium quinoa HOM05D003025 ORTHO05D003305 3.6e-08 64.3 473 22.4
FAN07G1412 Fragaria x ananassa HOM05D003025 ORTHO05D003305 4.6e-08 63.9 238 26.9
HanXRQChr16g0528681 Helianthus annuus HOM05D003025 ORTHO05D003305 4.6e-08 63.9 415 24.6
Lalb_Chr04g0255461 Lupinus albus HOM05D003025 ORTHO05D003305 4.6e-08 63.9 108 38.0
Lj2g0017874 Lotus japonicus HOM05D003025 ORTHO05D003305 6.1e-08 63.5 425 26.4
Oeu001651.1 Olea europaea HOM05D003025 ORTHO05D003305 7.9e-08 63.2 88 39.8
Thhalv10004181m.g Eutrema salsugineum HOM05D003025 ORTHO05D003305 1.0e-07 62.8 394 23.9
QL10p020762 Quercus lobata HOM05D011573 ORTHO05D003305 1.4e-07 62.4 113 36.3
MELO3C012167.2 Cucumis melo HOM05D003025 ORTHO05D003305 1.8e-07 62.0 402 25.4
FvH4_4g29290 Fragaria vesca HOM05D003025 ORTHO05D003305 1.8e-07 62.0 238 26.9
Thhalv10008913m.g Eutrema salsugineum HOM05D003025 ORTHO05D003305 3.9e-07 60.8 163 33.7
ATR0691G160 Amborella trichopoda HOM05D003025 ORTHO05D003305 5.1e-07 60.5 411 24.1
Sabra10G0106400 Salix brachista HOM05D003025 ORTHO05D003305 5.1e-07 60.5 442 24.4
Os04g0467100 Oryza sativa ssp. japonica HOM05D003025 ORTHO05D003305 1.1e-06 59.3 36 66.7
FAN17G1716 Fragaria x ananassa HOM05D003025 ORTHO05D003305 2.0e-06 58.5 251 27.1
MD16G1055400 Malus domestica HOM05D003025 ORTHO05D003305 2.0e-06 58.5 532 22.9
Lsat_1_v5_gn_3_105000 Lactuca sativa HOM05D003025 ORTHO05D003305 2.5e-06 58.2 189 30.7
PSO478G4016 Papaver somniferum HOM05D003025 ORTHO05D003305 3.3e-06 57.8 81 40.7
Zm00001eb080280 Zea mays HOM05D041475 ORTHO05D003305 3.3e-06 57.8 36 63.9
A09p24740 Brassica napus HOM05D003025 ORTHO05D003305 4.3e-06 57.4 103 34.0
HanXRQChr15g0475601 Helianthus annuus HOM05D003025 ORTHO05D003305 4.3e-06 57.4 161 28.6
Medtr5g047930 Medicago truncatula HOM05D003025 ORTHO05D003305 4.3e-06 57.4 382 25.1
PSO017G6048 Papaver somniferum HOM05D003025 ORTHO05D003305 4.3e-06 57.4 81 40.7
BraA09t38060Z Brassica rapa HOM05D003025 ORTHO05D003305 5.7e-06 57.0 103 34.0
unitig_62.g23701 Utricularia gibba HOM05D003025 ORTHO05D003305 7.4e-06 56.6 136 33.1
C02p51790 Brassica napus HOM05D003025 ORTHO05D003305 9.7e-06 56.2 396 23.5
HanXRQChr17g0568661 Helianthus annuus HOM05D003025 ORTHO05D003305 9.7e-06 56.2 406 26.4


User provided reference genes

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