Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 1.1e-193 679.9 348 100.0
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 1.8e-177 625.9 353 91.2
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 4.5e-152 541.6 388 76.0
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 2.0e-147 526.2 387 74.4
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 2.3e-140 502.7 386 72.0
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 3.7e-138 495.4 328 79.3
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 1.2e-128 463.8 302 79.8
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 1.2e-117 427.2 378 62.7
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 4.7e-117 425.2 389 63.2
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 1.0e-116 424.1 325 68.9
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 2.6e-115 419.5 374 61.8
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 3.4e-115 419.1 364 64.3
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 2.8e-114 416.0 385 60.3
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 6.3e-114 414.8 384 60.7
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 6.3e-114 414.8 385 60.5
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 1.8e-113 413.3 307 69.1
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 1.8e-113 413.3 368 62.0
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 3.1e-113 412.5 370 61.1
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 9.2e-113 411.0 371 61.7
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 1.2e-112 410.6 340 65.3
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 1.2e-112 410.6 377 60.7
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 3.5e-112 409.1 382 61.5
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 7.7e-112 407.9 377 61.3
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 2.3e-111 406.4 388 59.3
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 2.9e-111 406.0 302 69.2
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 3.8e-111 405.6 344 63.7
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 6.6e-111 404.8 386 59.1
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 8.6e-111 404.4 374 59.1
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 1.1e-110 404.1 393 59.0
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 4.3e-110 402.1 339 64.0
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 4.3e-110 402.1 336 64.0
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 1.6e-109 400.2 382 59.2
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 2.1e-109 399.8 319 64.9
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 2.8e-109 399.4 327 64.5
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 4.7e-109 398.7 349 61.9
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 8.0e-109 397.9 377 59.7
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 1.8e-108 396.7 382 59.7
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 2.3e-108 396.4 375 60.3
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 6.8e-108 394.8 323 63.2
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 2.6e-107 392.9 313 66.5
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 3.4e-107 392.5 375 60.0
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 3.4e-107 392.5 372 58.1
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 3.4e-107 392.5 310 65.5
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 5.7e-107 391.7 306 67.3
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 1.3e-106 390.6 306 65.7
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 1.7e-106 390.2 290 69.3
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 2.2e-106 389.8 365 58.1
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 6.4e-106 388.3 389 58.1
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 6.4e-106 388.3 373 59.2
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 8.3e-106 387.9 302 67.9
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 1.8e-105 386.7 386 58.3
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 3.2e-105 386.0 320 65.3
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 5.4e-105 385.2 304 65.5
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 9.2e-105 384.4 394 55.1
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 1.6e-104 383.6 339 59.9
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 3.5e-104 382.5 371 57.1
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 4.6e-104 382.1 380 57.4
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 1.7e-103 380.2 389 55.3
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 1.7e-103 380.2 319 61.1
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 5.0e-103 378.6 369 57.5
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 8.6e-103 377.9 364 57.1
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 8.6e-103 377.9 376 56.9
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 2.5e-102 376.3 321 61.7
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 2.5e-102 376.3 310 65.2
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 3.3e-102 375.9 328 60.7
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 5.6e-102 375.2 332 60.2
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 5.6e-102 375.2 391 56.3
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 5.6e-102 375.2 306 63.4
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 1.6e-101 373.6 314 63.7
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 2.1e-101 373.2 323 61.9
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 2.8e-101 372.9 369 56.1
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 4.7e-101 372.1 373 59.5
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 4.7e-101 372.1 324 61.1
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 1.0e-100 370.9 378 54.2
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 1.4e-100 370.5 382 55.8
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.4e-100 370.5 322 59.6
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 4.0e-100 369.0 381 56.4
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.6e-99 366.3 375 54.7
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 3.4e-99 365.9 377 54.4
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 5.8e-99 365.2 309 61.2
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 2.2e-98 363.2 379 54.9
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 6.4e-98 361.7 380 54.2
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 8.3e-98 361.3 379 53.8
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 8.3e-98 361.3 312 61.5
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 2.4e-97 359.8 377 53.8
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 2.3e-95 353.2 298 61.4
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 2.3e-95 353.2 354 55.9
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 1.1e-94 350.9 300 60.0
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 7.3e-94 348.2 445 48.3
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 2.1e-93 346.7 334 55.1
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 3.7e-90 335.9 211 79.6
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 1.1e-86 324.3 290 60.0
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 1.1e-86 324.3 290 60.0
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 1.6e-85 320.5 348 51.7
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 8.9e-84 314.7 206 75.7
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 4.7e-77 292.4 284 53.2
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 6.8e-76 288.5 328 49.1
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 2.7e-72 276.6 334 47.0
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 2.3e-71 273.5 296 47.6
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 2.3e-71 273.5 289 52.2
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 6.6e-71 271.9 295 54.9
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 7.3e-70 268.5 296 47.0
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.6e-69 267.3 298 44.6
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 2.1e-69 266.9 291 46.0
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 8.1e-69 265.0 291 47.1
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 2.4e-68 263.5 297 46.1
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 3.1e-68 263.1 297 46.5
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 1.2e-67 261.2 299 45.5
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.6e-67 260.0 291 45.0
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 4.4e-67 259.2 297 45.5
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 7.6e-67 258.5 297 44.1
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 3.8e-66 256.1 292 43.5
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 4.9e-66 255.8 296 45.3
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 6.4e-66 255.4 228 61.0
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 8.4e-66 255.0 301 51.8
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 1.1e-65 254.6 297 43.4
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.4e-65 254.2 297 44.4
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 4.2e-65 252.7 297 45.8
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 4.2e-65 252.7 295 45.4
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 5.4e-65 252.3 297 45.5
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 7.1e-65 251.9 297 45.5
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 7.1e-65 251.9 297 44.4
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 9.3e-65 251.5 297 44.4
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 9.3e-65 251.5 297 44.4
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 2.7e-64 250.0 302 43.4
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 2.7e-64 250.0 298 45.3
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.5e-64 249.6 297 43.4
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 3.5e-64 249.6 298 44.0
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 3.5e-64 249.6 297 46.1
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 7.9e-64 248.4 303 44.2
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 7.9e-64 248.4 290 44.5
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 3.9e-63 246.1 272 46.7
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.9e-62 243.8 301 43.9
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 2.5e-62 243.4 298 44.3
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 2.1e-61 240.4 302 43.7
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 2.8e-61 240.0 302 43.4
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 2.8e-61 240.0 297 43.1
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 6.2e-61 238.8 304 43.1
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 8.1e-61 238.4 218 56.0
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 1.1e-60 238.0 293 41.3
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 9.3e-57 224.9 276 43.5
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.3e-55 221.1 270 41.9
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 4.8e-53 212.6 191 51.8
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 3.8e-50 203.0 298 40.6
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 4.9e-50 202.6 191 50.8
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 1.9e-49 200.7 277 41.5
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 3.2e-49 199.9 284 40.5
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 1.3e-45 188.0 239 48.5
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 3.7e-45 186.4 191 48.7
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 2.0e-43 180.6 234 46.2
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 4.2e-41 172.9 283 40.6
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 6.7e-39 165.6 222 41.0
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 5.7e-38 162.5 128 55.5
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 2.8e-37 160.2 294 35.4
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 4.1e-36 156.4 128 53.9
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 4.1e-36 156.4 128 53.9
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.9e-33 147.5 270 35.6
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 5.5e-33 146.0 188 41.5
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 5.5e-33 146.0 188 41.5
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.6e-32 144.4 85 83.5
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 1.7e-29 134.4 111 53.2
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 8.2e-29 132.1 189 46.6
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 5.9e-27 125.9 94 71.3
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 2.5e-17 94.0 147 39.5
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 3.2e-17 93.6 148 38.5
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 4.4e-14 83.2 57 73.7
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 1.2e-06 58.5 77 42.9


User provided reference genes

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