Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2931.4 1501 100.0
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 2671.7 1501 91.5
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 2654.0 1501 90.9
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 2649.8 1461 92.5
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 2222.6 1504 75.9
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 2165.6 1548 73.1
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 2159.8 1511 74.6
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 2154.4 1507 74.0
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 2140.9 1507 74.7
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 2127.1 1508 74.2
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 2107.8 1506 73.1
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 2097.0 1505 72.8
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 2088.9 1507 72.1
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 2087.4 1509 72.8
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 2080.1 1507 72.6
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 2078.5 1505 72.6
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2076.2 1224 88.8
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 2076.2 1507 71.9
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 2072.0 1507 72.5
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 2072.0 1504 72.2
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 2068.1 1505 72.4
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 2064.7 1507 72.2
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 2060.8 1507 72.3
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 2053.9 1515 71.5
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 2052.7 1507 71.5
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 2052.3 1507 71.4
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 2049.2 1506 71.9
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 2043.9 1507 70.9
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 2041.9 1507 71.0
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 2041.5 1507 71.0
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 2038.5 1507 70.9
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 2036.9 1506 70.6
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 2035.4 1507 70.8
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 2031.9 1507 70.5
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 2030.0 1507 70.6
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 2028.4 1512 70.2
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 2028.1 1504 70.4
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 2026.1 1513 70.1
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 2024.2 1508 70.5
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 2022.7 1511 70.0
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 2019.6 1535 70.2
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 2018.4 1520 70.7
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 2008.8 1507 70.2
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 2005.3 1512 69.9
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 2003.0 1508 70.0
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 1995.7 1509 70.2
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 1993.4 1508 69.8
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 1991.5 1506 70.3
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 1988.0 1507 69.4
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 1987.6 1507 69.4
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 1986.8 1507 69.9
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 1978.8 1525 69.8
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 1969.1 1516 68.3
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 1968.0 1516 68.3
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 1964.9 1516 68.3
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 1959.9 1509 69.3
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 1947.9 1508 67.5
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 1944.5 1511 67.6
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 1936.8 1506 67.9
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 1931.8 1504 67.8
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 1920.6 1505 67.6
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 1912.5 1508 66.8
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 1897.9 1509 66.8
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 1894.0 1506 66.5
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 1892.1 1506 66.6
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 1892.1 1506 66.6
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 1892.1 1507 66.9
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 1890.5 1507 67.0
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 1889.8 1506 66.3
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 1885.2 1444 69.3
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 1880.5 1506 66.4
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 1878.2 1508 66.6
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 1873.6 1511 66.3
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 1870.5 1513 65.1
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 1866.7 1515 65.0
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 1851.6 1520 65.1
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 1847.4 1514 64.9
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 1838.5 1507 65.4
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1720.7 1518 61.3
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 1679.1 1521 59.4
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 1674.8 1328 68.0
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 1665.6 1508 59.0
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 1602.8 1265 67.2
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 1590.5 1260 68.5
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 1539.2 1523 57.2
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1494.9 1002 76.1
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 1450.6 1504 55.9
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 1346.3 1557 49.8
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1254.6 1584 47.3
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1252.3 1584 46.8
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1239.9 1000 65.5
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 0.0e+00 1216.4 1519 47.8
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1180.6 842 71.7
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1154.0 1550 44.3
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1121.7 834 69.3
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 3.1e-311 1072.4 898 67.0
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 1.6e-302 1043.5 1252 49.3
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 8.6e-301 1037.7 976 58.4
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 1.2e-299 1033.9 1135 53.8
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.3e-298 1029.6 850 62.5
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 7.9e-230 802.0 439 91.8
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 1.7e-224 784.3 1911 31.8
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 2.5e-207 727.2 670 59.4
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 1.2e-196 691.8 670 57.6
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 7.3e-191 672.5 412 83.7
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 3.3e-175 620.5 517 65.2
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 8.7e-144 516.2 655 45.8
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 1.8e-141 508.4 268 96.3
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 3.0e-128 464.5 325 73.2
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 1.8e-117 428.7 372 61.0
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 6.5e-115 420.2 248 84.3
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 6.7e-112 410.2 419 54.4
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 5.3e-101 374.0 302 63.9
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 1.1e-98 366.3 517 44.9
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 7.5e-95 353.6 541 44.0
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 2.4e-93 348.6 335 57.9
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 5.5e-90 337.4 242 69.8
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 6.8e-88 330.5 217 80.2
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.3e-80 305.4 309 55.3
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 3.2e-69 268.5 341 49.6
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 5.1e-67 261.2 328 46.3
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 2.3e-59 235.7 155 75.5
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 9.3e-45 187.2 218 47.7
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 5.6e-34 151.4 118 65.3
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 2.5e-26 125.9 82 78.0
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 1.9e-21 109.8 98 62.2
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 1.9e-21 109.8 98 65.3
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 2.5e-21 109.4 109 54.1
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 5.5e-21 108.2 92 65.2
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 7.1e-21 107.8 139 51.8
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 7.9e-20 104.4 70 77.1
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 6.7e-19 101.3 86 62.8
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 4.1e-08 65.5 44 72.7


User provided reference genes

Program Settings