Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 3409.4 1690 100.0
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 3112.4 1871 85.7
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 2821.2 1703 84.1
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 1986.1 1154 86.8
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 1913.7 1276 77.6
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 1749.2 1755 54.0
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 1664.8 1711 52.5
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 1616.3 1726 50.7
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 1613.2 1751 51.6
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 1532.7 1816 47.6
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 1520.4 1746 48.4
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 1508.0 1728 48.7
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 1505.3 1735 48.9
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 1498.8 1761 48.1
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 1489.9 1726 49.0
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 1481.1 1765 47.8
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 1475.7 1746 48.1
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 1473.8 1729 49.0
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 1470.7 1750 47.1
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 1469.1 1746 47.9
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 1468.8 1747 48.1
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 1466.4 1745 47.7
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 1450.6 1754 47.1
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 1448.3 1746 47.3
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 1441.0 1745 47.2
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 1438.3 1743 47.3
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 1435.6 1736 46.7
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 1432.5 1746 47.2
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 1431.4 1767 46.5
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 1416.4 1732 45.8
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 1414.8 1764 46.1
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 1414.1 1724 46.9
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 1412.9 1753 46.1
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 1411.4 1756 46.2
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 1405.2 1763 45.5
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 1396.3 1732 46.8
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 1388.6 1753 45.8
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 1351.7 1709 45.2
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 1338.6 1745 44.5
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 1323.5 1743 44.5
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 1320.8 1760 44.5
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 1320.4 1746 43.6
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 1310.4 1754 44.2
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 1309.3 1754 44.1
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 1308.9 1757 43.9
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 1305.8 1752 44.3
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 1302.3 1765 44.5
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 1300.8 1735 43.9
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 1298.9 1747 43.1
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 1297.0 1743 43.7
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 1292.7 1749 43.4
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 1288.9 1755 44.4
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 1286.9 1749 43.7
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1278.8 1718 42.4
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1273.8 1737 41.9
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 1259.2 1743 43.1
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 1255.0 1763 42.4
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 1251.9 1742 42.6
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 1248.8 1743 41.8
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 1247.6 1738 42.3
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 1245.7 1591 44.2
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 1245.0 1740 42.0
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 1239.9 1768 41.9
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 1238.4 1731 41.9
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 1237.2 1754 41.3
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 1235.7 1714 42.2
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 1230.3 1757 42.0
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 1226.1 1734 42.0
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 1221.5 1714 43.6
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 1221.1 1746 42.0
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 1220.7 1786 41.0
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 1219.1 1730 41.8
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 1211.1 1721 41.6
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 1201.4 1726 41.5
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 1201.4 1727 41.3
CAN.G1044.9 Capsicum annuum HOM05D004165 ORTHO05D005063 0.0e+00 1199.1 891 70.4
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 1196.8 1727 41.3
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 1196.0 1741 41.2
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 1156.7 1746 41.1
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 1135.2 1361 47.3
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 0.0e+00 1094.7 1535 43.1
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 4.7e-279 965.7 1757 37.3
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 8.0e-271 938.3 1502 39.7
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 1.3e-265 921.0 914 53.4
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 1.5e-261 907.5 1720 34.1
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 4.1e-251 872.8 1504 38.2
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 6.0e-250 869.0 882 54.2
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 1.4e-246 857.8 1555 36.4
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 6.2e-239 832.4 895 51.6
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 1.6e-234 817.8 1027 46.9
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 7.3e-232 808.9 453 89.6
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 6.9e-230 802.4 861 51.5
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 7.8e-226 788.9 746 56.7
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 1.1e-211 741.9 1772 31.2
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 1.8e-209 734.6 925 44.1
CAN.G1044.7 Capsicum annuum HOM05D004165 ORTHO05D005063 2.8e-191 674.1 408 84.8
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 7.2e-171 606.3 1694 29.2
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 3.0e-161 574.3 1700 28.2
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 6.8e-161 573.2 1931 26.9
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 4.0e-153 547.4 445 60.4
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 1.3e-151 542.3 454 58.6
Dinv05635 Davidia involucrata HOM05D004165 ORTHO05D005063 1.8e-145 521.9 803 40.6
Haze_25071 Corylus avellana HOM05D004165 ORTHO05D005063 3.9e-140 504.2 815 39.1
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 4.7e-138 497.3 850 36.2
COL.COLO4_22365 Corchorus olitorius HOM05D004165 ORTHO05D005063 6.0e-133 480.3 841 37.0
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 2.8e-130 471.5 938 35.7
DCAR_016673 Daucus carota HOM05D004165 ORTHO05D005063 1.0e-116 426.4 808 36.1
Haze_25069 Corylus avellana HOM05D004165 ORTHO05D005063 1.9e-110 405.6 439 51.7
Oeu054940.1 Olea europaea HOM05D004165 ORTHO05D005063 9.0e-105 386.7 665 38.2
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 4.6e-101 374.4 456 45.0
SHI11781 Sapria himalayana HOM05D004165 ORTHO05D005063 2.5e-86 325.5 892 29.9
SHI11786 Sapria himalayana HOM05D004165 ORTHO05D005063 6.7e-84 317.4 451 39.7
Cpa.g.sc72.14 Carica papaya HOM05D004165 ORTHO05D005063 4.8e-82 311.2 248 62.5
CDE07G1151 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 2.2e-79 302.4 814 29.6
Cpa.g.sc72.15 Carica papaya HOM05D004165 ORTHO05D005063 6.1e-77 294.3 347 47.3
SEGI_28346 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 1.4e-62 246.5 970 25.7
Os01g0182832 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 1.1e-59 236.9 688 28.2
TAR629G2775 Trochodendron aralioides HOM05D004165 ORTHO05D005063 2.8e-58 232.3 783 25.4
SHI11785 Sapria himalayana HOM05D004165 ORTHO05D005063 2.6e-56 225.7 407 35.4
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 6.1e-53 214.5 168 61.3
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 3.0e-52 212.2 117 88.9
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 8.8e-52 210.7 1083 24.0
AagrBONN_evm.TU.Sc2ySwM_344.5500 Anthoceros agrestis HOM05D004165 ORTHO05D005063 3.2e-46 192.2 475 31.6
SMO116G0288 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 1.2e-45 190.3 416 32.0
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 7.0e-41 174.5 127 70.9
arahy.Tifrunner.gnm1.ann1.SA1CMP Arachis hypogaea HOM05D004165 ORTHO05D023735 8.9e-28 131.0 136 53.7
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 4.1e-17 95.5 72 63.9
Lsat_1_v5_gn_3_81660 Lactuca sativa HOM05D000921 ORTHO05D002852 2.1e-13 83.2 63 60.3
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 4.7e-13 82.0 150 33.3
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 8.1e-13 81.3 68 55.9
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 4.4e-11 75.5 74 48.6
Cpa.g.c46795 Carica papaya HOM05D004165 ORTHO05D005063 1.7e-10 73.6 58 65.5
Lsat_1_v5_gn_3_124661 Lactuca sativa HOM05D004165 ORTHO05D232501 9.2e-09 67.8 58 63.8
Lsat_1_v5_gn_5_173760 Lactuca sativa HOM05D000298 ORTHO05D233122 1.7e-07 63.5 145 35.2


User provided reference genes

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