Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 4.2e-130 468.0 229 100.0
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.6e-113 412.9 213 93.9
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 1.6e-105 386.3 215 87.4
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 4.3e-103 378.3 215 86.0
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 7.4e-103 377.5 215 86.0
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 2.1e-102 375.9 215 85.6
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 4.8e-102 374.8 209 88.0
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 5.5e-98 361.3 215 81.9
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 2.5e-95 352.4 207 81.2
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 4.8e-94 348.2 218 77.5
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 1.7e-91 339.7 215 78.1
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 3.8e-91 338.6 217 77.4
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 3.8e-91 338.6 215 74.9
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 1.4e-90 336.7 217 76.5
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 1.4e-90 336.7 215 77.2
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 5.5e-90 334.7 208 78.4
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 1.6e-89 333.2 208 77.9
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 2.7e-89 332.4 213 76.5
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 1.0e-88 330.5 216 76.9
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 1.0e-88 330.5 190 82.6
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 3.0e-88 328.9 197 80.7
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 5.1e-88 328.2 213 74.6
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 6.7e-88 327.8 215 75.8
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 6.7e-88 327.8 215 75.8
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 8.8e-88 327.4 205 77.1
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 3.3e-87 325.5 213 75.1
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 3.3e-87 325.5 213 75.1
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 3.3e-87 325.5 207 76.8
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 5.7e-87 324.7 205 77.1
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 1.7e-86 323.2 224 72.8
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 2.8e-86 322.4 206 76.2
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 2.8e-86 322.4 207 77.3
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 3.7e-86 322.0 206 76.2
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 3.7e-86 322.0 224 72.8
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 3.7e-86 322.0 224 72.3
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 3.7e-86 322.0 224 72.8
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 3.7e-86 322.0 224 72.8
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 1.1e-85 320.5 198 79.8
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 1.8e-85 319.7 188 81.4
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 2.4e-85 319.3 210 75.7
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 3.1e-85 318.9 209 74.6
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 9.1e-85 317.4 207 74.9
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 2.6e-84 315.8 208 74.5
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 3.4e-84 315.5 208 75.5
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 3.4e-84 315.5 207 75.8
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 4.5e-84 315.1 211 73.5
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 1.3e-83 313.5 204 75.0
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 1.3e-83 313.5 216 70.8
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 1.3e-83 313.5 195 77.9
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 2.2e-83 312.8 188 79.3
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 6.5e-83 311.2 206 73.3
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 1.9e-82 309.7 192 78.6
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 4.2e-82 308.5 188 79.3
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 5.5e-82 308.1 222 69.8
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 2.1e-81 306.2 192 77.1
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 2.1e-81 306.2 192 78.1
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 2.7e-81 305.8 187 78.6
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 2.7e-81 305.8 195 75.4
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 6.1e-81 304.7 189 78.3
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 7.9e-81 304.3 198 74.2
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 1.0e-80 303.9 216 69.9
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 1.4e-80 303.5 194 76.3
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 2.3e-80 302.8 219 69.4
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 3.0e-80 302.4 218 69.3
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 3.9e-80 302.0 207 71.0
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 6.7e-80 301.2 206 71.8
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 1.1e-79 300.4 198 73.7
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 3.3e-79 298.9 184 79.3
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 7.4e-79 297.7 188 77.1
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 9.7e-79 297.4 194 75.3
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 1.7e-78 296.6 194 76.3
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 2.8e-78 295.8 215 70.2
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 6.3e-78 294.7 229 65.9
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 1.4e-77 293.5 187 76.5
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 4.1e-77 292.0 184 77.7
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 4.1e-77 292.0 186 76.3
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 9.1e-77 290.8 227 67.0
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 1.2e-76 290.4 184 76.6
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 3.5e-76 288.9 193 74.1
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 3.5e-76 288.9 188 73.9
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 4.5e-76 288.5 183 77.6
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 5.9e-76 288.1 184 76.6
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 5.9e-76 288.1 215 66.5
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 5.9e-76 288.1 182 74.7
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 1.0e-75 287.3 224 64.7
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 1.7e-75 286.6 183 77.0
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 2.9e-75 285.8 226 69.0
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 5.0e-75 285.0 217 69.6
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 1.1e-74 283.9 183 75.4
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 2.5e-74 282.7 218 67.4
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 7.2e-74 281.2 192 71.9
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 4.7e-73 278.5 228 64.0
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 8.0e-73 277.7 192 71.4
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 8.0e-73 277.7 187 73.8
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 2.3e-72 276.2 193 72.5
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 5.2e-72 275.0 184 74.5
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 6.7e-72 274.6 199 64.8
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 2.6e-71 272.7 195 70.3
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 2.2e-70 269.6 173 76.3
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 4.8e-70 268.5 190 70.0
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 4.8e-70 268.5 217 63.6
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 4.8e-70 268.5 217 63.6
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 6.3e-70 268.1 220 62.7
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 1.4e-69 266.9 187 71.1
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 4.1e-69 265.4 187 71.1
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 9.1e-69 264.2 186 71.0
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 9.1e-69 264.2 186 71.0
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 9.1e-69 264.2 180 71.1
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 9.1e-69 264.2 192 68.2
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 2.0e-68 263.1 217 63.6
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 1.7e-67 260.0 186 69.4
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 7.2e-66 254.6 148 81.1
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 2.1e-65 253.1 163 76.7
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 1.5e-63 246.9 168 68.5
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 9.7e-63 244.2 172 73.3
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.1e-58 230.7 185 65.9
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 9.8e-55 217.6 189 61.9
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 3.7e-54 215.7 120 84.2
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 5.9e-52 208.4 116 85.3
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 3.6e-49 199.1 115 80.9
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 1.7e-46 190.3 162 61.1
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 1.8e-45 186.8 107 78.5
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 5.4e-45 185.3 173 54.9
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 5.6e-42 175.3 179 46.9
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 3.4e-39 166.0 144 52.8
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 3.7e-38 162.5 170 48.8
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 5.4e-37 158.7 153 50.3
Lalb_Chr01g0010161 Lupinus albus HOM05D005690 ORTHO05D007075 1.2e-28 131.0 64 90.6
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 5.1e-27 125.6 176 36.4
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 1.1e-16 91.3 144 34.0
Lalb_Chr01g0010151 Lupinus albus HOM05D005690 ORTHO05D007075 5.8e-15 85.5 62 66.1
MCO03G451 Micromonas commoda HOM05D005690 ORTHO05D007075 9.3e-13 78.2 168 31.5
CDE07G0610 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 1.6e-12 77.4 112 42.0
Nn2g10688 Nelumbo nucifera HOM05D005690 ORTHO05D007075 2.8e-09 66.6 50 66.0
HanXRQChr10g0292531 Helianthus annuus HOM05D005690 ORTHO05D007075 1.3e-06 57.8 55 58.2


User provided reference genes

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