Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009001g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 0.0e+00 1578.5 840 100.0
Nitab4.5_0000159g0160 Nicotiana tabacum HOM05D004393 ORTHO05D004897 0.0e+00 1421.0 873 88.0
Solyc11g017130.2 Solanum lycopersicum HOM05D004393 ORTHO05D004897 0.0e+00 1184.1 872 77.4
Sopen11g009080 Solanum pennellii HOM05D004393 ORTHO05D004897 0.0e+00 1182.5 872 77.2
Peaxi162Scf00495g00119 Petunia axillaris HOM05D004393 ORTHO05D004897 0.0e+00 1100.1 875 72.0
CAN.G61.21 Capsicum annuum HOM05D004393 ORTHO05D004897 0.0e+00 1090.9 889 71.9
Peaxi162Scf00268g01216 Petunia axillaris HOM05D004393 ORTHO05D004897 7.0e-268 927.5 838 61.7
Nitab4.5_0004461g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 2.3e-263 912.5 855 60.6
Sopen06g023940 Solanum pennellii HOM05D004393 ORTHO05D004897 5.0e-258 894.8 853 59.7
Solyc06g065450.3 Solanum lycopersicum HOM05D004393 ORTHO05D004897 6.2e-256 887.9 853 59.6
CAN.G199.23 Capsicum annuum HOM05D004393 ORTHO05D004897 3.7e-253 878.6 860 58.8
Nitab4.5_0000303g0030 Nicotiana tabacum HOM05D004393 ORTHO05D004897 5.4e-252 874.8 855 58.6
PGSC0003DMG402026117 Solanum tuberosum HOM05D004393 ORTHO05D004897 1.9e-180 637.1 629 58.2
Oeu021008.1 Olea europaea HOM05D004393 ORTHO05D004897 2.1e-171 607.1 874 45.9
Cc00_g08770 Coffea canephora HOM05D004393 ORTHO05D004897 1.2e-169 601.3 875 46.5
Oeu039591.2 Olea europaea HOM05D004393 ORTHO05D004897 4.1e-167 592.8 885 46.6
Rhsim06G0097300 Rhododendron simsii HOM05D004393 ORTHO05D004897 7.7e-158 562.0 882 43.2
MSTRG.25436 Avicennia marina HOM05D004393 ORTHO05D004897 5.0e-157 559.3 882 45.7
TAR381G1591 Trochodendron aralioides HOM05D004393 ORTHO05D004897 1.8e-154 550.8 862 44.1
Nn5g27793 Nelumbo nucifera HOM05D004393 ORTHO05D004897 4.4e-153 546.2 952 40.4
Duzib116G0396 Durio zibethinus HOM05D004393 ORTHO05D004897 1.1e-148 531.6 1007 38.8
Actinidia23321 Actinidia chinensis HOM05D004393 ORTHO05D004897 1.4e-146 524.6 1155 35.8
vmacro12498 Vaccinium macrocarpon HOM05D004393 ORTHO05D004897 1.8e-146 524.2 976 40.9
Gohir.A09G117000 Gossypium hirsutum HOM05D004393 ORTHO05D004897 1.9e-143 514.2 885 41.0
PGSC0003DMG400009216 Solanum tuberosum HOM05D004393 ORTHO05D004897 1.9e-143 514.2 295 87.1
GSVIVG01034506001 Vitis vinifera HOM05D004393 ORTHO05D004897 1.9e-143 514.2 910 40.4
Gohir.D09G113900 Gossypium hirsutum HOM05D004393 ORTHO05D004897 3.0e-141 506.9 887 41.0
Gorai.006G131600 Gossypium raimondii HOM05D004393 ORTHO05D004897 5.0e-141 506.1 896 40.6
QL02p034089 Quercus lobata HOM05D004393 ORTHO05D004897 4.4e-137 493.0 1077 36.0
Atru.chr13.1813 Acer truncatum HOM05D004393 ORTHO05D004897 2.1e-134 484.2 1006 37.0
Ciclev10000264m.g Citrus clementina HOM05D004393 ORTHO05D004897 2.1e-134 484.2 907 40.8
Thecc.08G202200 Theobroma cacao HOM05D004393 ORTHO05D004897 2.1e-134 484.2 1076 36.5
COL.COLO4_29964 Corchorus olitorius HOM05D004393 ORTHO05D004897 8.6e-133 478.8 995 37.7
MD05G1040500 Malus domestica HOM05D004393 ORTHO05D004897 2.3e-130 470.7 1050 35.0
Manes.18G099700 Manihot esculenta HOM05D004393 ORTHO05D004897 3.4e-129 466.8 991 37.4
Sabra13G0097000 Salix brachista HOM05D004393 ORTHO05D004897 4.4e-129 466.5 978 37.2
SGA_v2.0_scaffold118G32462 Striga asiatica HOM05D004393 ORTHO05D004897 5.8e-129 466.1 845 41.8
Haze_17905 Corylus avellana HOM05D004393 ORTHO05D004897 5.4e-127 459.5 1220 33.7
CiPaw.16G062700 Carya illinoinensis HOM05D004393 ORTHO05D004897 3.0e-125 453.8 1277 32.1
Migut.C01240 Erythranthe guttata HOM05D004393 ORTHO05D004897 3.0e-125 453.8 853 41.3
AUR62023578 Chenopodium quinoa HOM05D004393 ORTHO05D004897 3.9e-125 453.4 944 35.3
AUR62004661 Chenopodium quinoa HOM05D004393 ORTHO05D004897 1.1e-124 451.8 964 35.4
Sc01g0001720 Simmondsia chinensis HOM05D004393 ORTHO05D004897 2.1e-123 447.6 1058 34.1
Aqoxy6G00122 Aquilegia oxysepala HOM05D004393 ORTHO05D004897 2.8e-123 447.2 891 38.9
CSS0013393 Camellia sinensis var. sinensis HOM05D004393 ORTHO05D004897 8.1e-123 445.7 1191 35.9
Potri.013G114700 Populus trichocarpa HOM05D004393 ORTHO05D004897 1.8e-122 444.5 1061 33.6
PSO782G0828 Papaver somniferum HOM05D004393 ORTHO05D004897 2.0e-121 441.0 952 38.2
arahy.Tifrunner.gnm1.ann1.Y0NS3Z Arachis hypogaea HOM05D004393 ORTHO05D004897 2.6e-121 440.7 986 34.4
TWI60G1027 Tripterygium wilfordii HOM05D004393 ORTHO05D004897 1.7e-120 438.0 998 35.7
SalBow7G1128 Salvia bowleyana HOM05D004393 ORTHO05D004897 2.9e-120 437.2 898 38.8
arahy.Tifrunner.gnm1.ann1.1646XJ Arachis hypogaea HOM05D004393 ORTHO05D004897 1.4e-119 434.9 979 33.9
Hund27078 Selenicereus undatus HOM05D004393 ORTHO05D004897 1.9e-119 434.5 1061 33.4
Cpa.g.sc66.57 Carica papaya HOM05D004393 ORTHO05D004897 4.6e-118 429.9 1229 31.7
MD10G1046600 Malus domestica HOM05D004393 ORTHO05D004897 1.3e-117 428.3 1046 33.7
CsaV3_7G024210 Cucumis sativus L. HOM05D004393 ORTHO05D004897 1.7e-117 427.9 1110 32.7
PSO170G6764 Papaver somniferum HOM05D004393 ORTHO05D004897 5.1e-117 426.4 951 38.0
MELO3C023669.2 Cucumis melo HOM05D004393 ORTHO05D004897 2.4e-114 417.5 975 35.0
Prupe.8G054200 Prunus persica HOM05D004393 ORTHO05D004897 5.8e-113 412.9 1185 32.5
PGR042G3903 Punica granatum HOM05D004393 ORTHO05D004897 1.1e-111 408.7 1048 33.7
RcHm_v2.0_Chr6g0272171 Rosa chinensis HOM05D004393 ORTHO05D004897 1.9e-111 407.9 1073 34.2
MBI16_g07683_MAGBIO Magnolia biondii HOM05D004393 ORTHO05D004897 2.7e-110 404.1 966 35.3
CANSAT25G3510 Cannabis sativa HOM05D004393 ORTHO05D004897 3.5e-110 403.7 1010 34.9
Phvul.004G084400 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 2.3e-109 401.0 1182 30.9
Lalb_Chr03g0035861 Lupinus albus HOM05D004393 ORTHO05D004897 4.3e-108 396.7 1165 30.6
Glyma.02G074500 Glycine max HOM05D004393 ORTHO05D004897 6.2e-107 392.9 1202 29.9
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 1.1e-106 392.1 1023 33.0
FAN27G3511 Fragaria x ananassa HOM05D004393 ORTHO05D004897 1.8e-106 391.3 1033 32.8
Glyma.16G156500 Glycine max HOM05D004393 ORTHO05D004897 1.8e-106 391.3 1225 29.6
FAN20G0457 Fragaria x ananassa HOM05D004393 ORTHO05D004897 6.9e-106 389.4 1043 32.1
FvH4_2g12232 Fragaria vesca HOM05D004393 ORTHO05D004897 9.0e-106 389.0 1024 33.0
Sed0026578 Sechium edule HOM05D004393 ORTHO05D004897 1.5e-105 388.3 1087 32.3
Ah.05g177790 Amaranthus hybridus HOM05D004393 ORTHO05D004897 1.9e-103 381.3 1103 30.6
VMungo0464G1718 Vigna mungo HOM05D004393 ORTHO05D004897 2.4e-103 380.9 1261 29.6
ClCG09G010400 Citrullus lanatus HOM05D004393 ORTHO05D004897 9.3e-103 379.0 1155 30.6
Lj2g0019211 Lotus japonicus HOM05D004393 ORTHO05D004897 3.5e-102 377.1 1318 28.7
Lalb_Chr01g0009981 Lupinus albus HOM05D004393 ORTHO05D004897 1.0e-101 375.6 1131 29.9
ATR0584G230 Amborella trichopoda HOM05D004393 ORTHO05D004897 2.6e-97 360.9 844 35.8
SGA_v2.0_scaffold24G10548 Striga asiatica HOM05D004393 ORTHO05D004897 3.2e-95 354.0 850 37.6
Cfa018204 Carpinus fangiana HOM05D004393 ORTHO05D004897 1.0e-93 349.0 419 49.2
SHI09053 Sapria himalayana HOM05D004393 ORTHO05D004897 1.2e-89 335.5 919 32.0
THA.LOC104813097 Tarenaya hassleriana HOM05D004393 ORTHO05D004897 3.4e-89 334.0 1230 27.2
HPP92_019371 Vanilla planifolia HOM05D004393 ORTHO05D004897 7.6e-89 332.8 931 31.9
DCAR_014776 Daucus carota HOM05D004393 ORTHO05D004897 1.3e-85 322.0 391 50.1
A09p32120 Brassica napus HOM05D004393 ORTHO05D004897 1.8e-85 321.6 845 34.0
BraA09t38751Z Brassica rapa HOM05D004393 ORTHO05D004897 3.7e-83 313.9 1200 28.5
Lsat_1_v5_gn_4_119261 Lactuca sativa HOM05D004393 ORTHO05D004897 8.2e-83 312.8 825 32.8
Peaxi162Scf00207g01618 Petunia axillaris HOM05D004393 ORTHO05D004897 5.9e-81 306.6 279 63.4
AT1G34355 Arabidopsis thaliana HOM05D004393 ORTHO05D004897 7.7e-81 306.2 601 36.8
Thhalv10006568m.g Eutrema salsugineum HOM05D004393 ORTHO05D004897 1.4e-79 302.0 620 36.6
C06p11600 Brassica napus HOM05D004393 ORTHO05D004897 4.2e-79 300.4 636 36.3
CARHR033810 Cardamine hirsuta HOM05D004393 ORTHO05D004897 5.5e-79 300.1 725 33.4
BolC6t36294H Brassica oleracea HOM05D004393 ORTHO05D004897 2.1e-78 298.1 636 36.3
BcaC08g43782 Brassica carinata HOM05D004393 ORTHO05D004897 2.7e-78 297.7 637 36.3
Carub.0001s3249 Capsella rubella HOM05D004393 ORTHO05D004897 1.8e-77 295.0 713 34.1
VMungo0720G0020 Vigna mungo HOM05D004393 ORTHO05D004897 2.3e-77 294.7 1124 27.5
AL1G48910 Arabidopsis lyrata HOM05D004393 ORTHO05D004897 6.7e-77 293.1 574 37.3
Sp1g29580 Schrenkiella parvula HOM05D004393 ORTHO05D004897 2.0e-76 291.6 724 33.3
Aa31LG6G8430 Aethionema arabicum HOM05D004393 ORTHO05D004897 9.7e-76 289.3 699 35.5
Os11g0171700 Oryza sativa ssp. japonica HOM05D004393 ORTHO05D004897 9.7e-76 289.3 1103 28.0
BcaC07g37547 Brassica carinata HOM05D004393 ORTHO05D004897 8.2e-75 286.2 851 30.7
A10p12670 Brassica napus HOM05D004393 ORTHO05D004897 4.1e-74 283.9 421 42.5
BraA08t32845Z Brassica rapa HOM05D004393 ORTHO05D004897 9.1e-74 282.7 843 30.5
BraA10t43355Z Brassica rapa HOM05D004393 ORTHO05D004897 1.5e-73 282.0 421 42.3
BcaC04g20233 Brassica carinata HOM05D004393 ORTHO05D004897 4.5e-73 280.4 425 42.8
A08p08270 Brassica napus HOM05D004393 ORTHO05D004897 5.9e-73 280.0 837 29.5
C09p46070 Brassica napus HOM05D004393 ORTHO05D004897 5.0e-72 276.9 425 42.6
BolC9t57476H Brassica oleracea HOM05D004393 ORTHO05D004897 5.0e-72 276.9 425 42.6
Dinv01093 Davidia involucrata HOM05D004393 ORTHO05D004897 1.1e-71 275.8 803 32.8
Phvul.007G090600 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 5.5e-71 273.5 1154 26.2
Lj7C297T5 Lonicera japonica HOM05D004393 ORTHO05D004897 9.4e-71 272.7 323 51.4
Glyma.10G215100 Glycine max HOM05D004393 ORTHO05D004897 1.2e-70 272.3 459 39.4
Ca_10603_v3 Cicer arietinum L. HOM05D004393 ORTHO05D004897 1.0e-69 269.2 1003 28.9
Lj5g0027195 Lotus japonicus HOM05D004393 ORTHO05D004897 7.4e-68 263.1 1088 28.6
Zm00001eb091700 Zea mays HOM05D004393 ORTHO05D004897 4.8e-67 260.4 1090 27.2
BcaB07g33130 Brassica carinata HOM05D004393 ORTHO05D004897 3.1e-66 257.7 560 36.4
arahy.Tifrunner.gnm1.ann1.6817V4 Arachis hypogaea HOM05D004393 ORTHO05D004897 5.9e-65 253.4 380 42.6
CDE04G2403 Ceratophyllum demersum HOM05D004393 ORTHO05D004897 1.7e-64 251.9 399 41.9
arahy.Tifrunner.gnm1.ann1.MV35XS Arachis hypogaea HOM05D004393 ORTHO05D004897 6.5e-64 250.0 376 42.3
TAR624G0562 Trochodendron aralioides HOM05D004393 ORTHO05D004897 2.3e-61 241.5 391 43.2
TPR.G1817 Trifolium pratense HOM05D004393 ORTHO05D004897 1.5e-60 238.8 1139 26.2
BolC8t47860H Brassica oleracea HOM05D004393 ORTHO05D004897 6.3e-59 233.4 808 30.0
Psat6g185840 Pisum sativum HOM05D004393 ORTHO05D004897 3.1e-58 231.1 1090 26.0
HanXRQChr09g0268931 Helianthus annuus HOM05D004393 ORTHO05D004897 1.3e-56 225.7 1123 25.5
Medtr1g096000 Medicago truncatula HOM05D004393 ORTHO05D004897 6.1e-54 216.9 305 43.0
PGSC0003DMG401026117 Solanum tuberosum HOM05D004393 ORTHO05D004897 6.1e-54 216.9 172 68.0
BcaB04g17878 Brassica carinata HOM05D004393 ORTHO05D004897 5.2e-53 213.8 334 40.7
SEGI_03768 Sequoiadendron giganteum HOM05D004393 ORTHO05D004897 8.8e-53 213.0 291 41.9
BcaB06g26599 Brassica carinata HOM05D004393 ORTHO05D004897 2.0e-49 201.8 287 44.9
TAR624G0853 Trochodendron aralioides HOM05D004393 ORTHO05D004897 2.5e-47 194.9 158 65.2
C07p12350 Brassica napus HOM05D004393 ORTHO05D004897 2.3e-45 188.3 271 42.8
A07p08200 Brassica napus HOM05D004393 ORTHO05D004897 6.8e-45 186.8 279 40.9
BraA07t28604Z Brassica rapa HOM05D004393 ORTHO05D004897 6.8e-45 186.8 279 40.9
BcaC06g35663 Brassica carinata HOM05D004393 ORTHO05D004897 1.1e-42 179.5 250 43.6
ECA232G2172 Erigeron canadensis HOM05D004393 ORTHO05D004897 4.5e-41 174.1 238 47.1
Mapoly0005s0164 Marchantia polymorpha HOM05D004393 ORTHO05D004897 7.8e-41 173.3 810 24.7
AagrBONN_evm.TU.Sc2ySwM_344.4382 Anthoceros agrestis HOM05D004393 ORTHO05D004897 3.7e-35 154.5 803 25.4
Peaxi162Scf00207g01617 Petunia axillaris HOM05D004393 ORTHO05D004897 2.4e-34 151.8 203 45.3
Glyma.20G176566 Glycine max HOM05D004393 ORTHO05D004897 5.4e-34 150.6 276 39.5
SMO351G0170 Selaginella moellendorffii HOM05D004393 ORTHO05D004897 1.0e-32 146.4 340 31.8
AUR62012506 Chenopodium quinoa HOM05D004393 ORTHO05D004897 6.6e-32 143.7 216 42.6
Lalb_Chr24g0401061 Lupinus albus HOM05D004393 ORTHO05D004897 1.9e-31 142.1 173 45.1
Pp3c16_5970 Physcomitrium patens HOM05D043451 ORTHO05D004897 3.6e-30 137.9 268 38.1
Pp3c27_1110 Physcomitrium patens HOM05D004393 ORTHO05D004897 3.1e-29 134.8 276 35.1
BolC7t41736H Brassica oleracea HOM05D004393 ORTHO05D004897 2.0e-28 132.1 239 37.2
Pp3c5_9820 Physcomitrium patens HOM05D004393 ORTHO05D004897 2.2e-27 128.6 204 35.8
Lj7A297T46 Lonicera japonica HOM05D004393 ORTHO05D004897 2.0e-25 122.1 176 44.3
Sabra07G0062600 Salix brachista HOM05D004393 ORTHO05D004897 2.3e-24 118.6 306 33.7
EL10Ac1g00069 Beta vulgaris HOM05D004393 ORTHO05D004897 8.6e-24 116.7 158 44.3
Actinidia32880 Actinidia chinensis HOM05D004393 ORTHO05D004897 1.2e-22 112.8 163 46.6
CDE12G0855 Ceratophyllum demersum HOM05D004393 ORTHO05D004897 5.8e-20 104.0 120 50.0
Nitab4.5_0004558g0010 Nicotiana tabacum HOM05D004547 ORTHO05D016189 2.7e-17 95.1 125 52.8
PGR044G2736 Punica granatum HOM05D000582 ORTHO05D000456 6.0e-17 94.0 108 47.2
BcaB04g17879 Brassica carinata HOM05D004393 ORTHO05D004897 1.5e-15 89.4 89 56.2
arahy.Tifrunner.gnm1.ann1.9CDI8S Arachis hypogaea HOM05D004393 ORTHO05D004897 3.3e-15 88.2 85 49.4
Lalb_Chr24g0401081 Lupinus albus HOM05D004393 ORTHO05D004897 2.2e-11 75.5 100 44.0
Nitab4.5_0008254g0030 Nicotiana tabacum HOM05D016682 ORTHO05D013826 3.9e-08 64.7 57 63.2
SEGI_25836 Sequoiadendron giganteum HOM05D001370 ORTHO05D004632 1.1e-07 63.2 87 37.9
Lj7A297T45 Lonicera japonica HOM05D004393 ORTHO05D004897 7.3e-07 60.5 207 30.4
Eucgr.F02629 Eucalyptus grandis HOM05D004393 ORTHO05D004897 4.7e-06 57.8 143 33.6


User provided reference genes

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