Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008987g0050 Nicotiana tabacum HOM05D005857 ORTHO05D007193 4.8e-34 147.1 68 100.0
Nitab4.5_0006159g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.6e-21 105.5 56 83.9
Solyc01g102830.3 Solanum lycopersicum HOM05D005857 ORTHO05D007193 4.7e-21 104.0 56 82.1
Sopen01g045230 Solanum pennellii HOM05D005857 ORTHO05D007193 4.7e-21 104.0 56 82.1
PGSC0003DMG400018258 Solanum tuberosum HOM05D005857 ORTHO05D007193 4.7e-21 104.0 56 82.1
CAN.G1379.7 Capsicum annuum HOM05D005857 ORTHO05D007193 6.1e-21 103.6 56 82.1
Peaxi162Scf00194g01021 Petunia axillaris HOM05D005857 ORTHO05D007193 6.1e-21 103.6 55 83.6
Nitab4.5_0000521g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 6.8e-20 100.1 56 82.1
Sc03g0005520 Simmondsia chinensis HOM05D005857 ORTHO05D007193 6.8e-20 100.1 56 78.6
Nitab4.5_0001085g0140 Nicotiana tabacum HOM05D005857 ORTHO05D007193 3.7e-18 94.4 52 80.8
Nitab4.5_0004030g0040 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.1e-17 92.8 53 83.0
Potri.004G229900 Populus trichocarpa HOM05D005857 ORTHO05D007193 5.3e-17 90.5 55 74.5
ATR1089G102 Amborella trichopoda HOM05D005857 ORTHO05D007193 7.0e-17 90.1 57 68.4
CSS0043387 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 1.6e-16 89.0 55 74.5
HanXRQChr11g0343801 Helianthus annuus HOM05D005857 ORTHO05D007193 2.0e-16 88.6 55 74.5
Manes.14G164233 Manihot esculenta HOM05D005857 ORTHO05D007193 2.0e-16 88.6 55 70.9
SalBow1G1563 Salvia bowleyana HOM05D005857 ORTHO05D007193 2.7e-16 88.2 55 72.7
CSS0006636 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 4.5e-16 87.4 55 72.7
vmacro01623 Vaccinium macrocarpon HOM05D005857 ORTHO05D007193 5.9e-16 87.0 55 70.9
SGA_v2.0_scaffold100G29556 Striga asiatica HOM05D001195 ORTHO05D001138 7.7e-16 86.7 55 74.5
Oeu000158.1 Olea europaea HOM05D005857 ORTHO05D007193 1.3e-15 85.9 55 70.9
Cc08_g11670 Coffea canephora HOM05D005857 ORTHO05D007193 1.7e-15 85.5 55 70.9
CsaV3_5G027560 Cucumis sativus L. HOM05D005857 ORTHO05D007193 2.9e-15 84.7 65 60.0
Manes.06G013700 Manihot esculenta HOM05D005857 ORTHO05D007193 2.9e-15 84.7 55 67.3
Gohir.A05G160000 Gossypium hirsutum HOM05D005857 ORTHO05D007193 5.0e-15 84.0 55 67.3
Gohir.D05G162700 Gossypium hirsutum HOM05D005857 ORTHO05D007193 5.0e-15 84.0 55 67.3
Gorai.009G167700 Gossypium raimondii HOM05D005857 ORTHO05D007193 5.0e-15 84.0 55 67.3
HanXRQChr10g0285581 Helianthus annuus HOM05D005857 ORTHO05D007193 5.0e-15 84.0 55 72.7
Lsat_1_v5_gn_9_83180 Lactuca sativa HOM05D005857 ORTHO05D007193 5.0e-15 84.0 56 73.2
PSO210G5758 Papaver somniferum HOM05D005857 ORTHO05D007193 5.0e-15 84.0 54 70.4
Oeu010607.1 Olea europaea HOM05D005857 ORTHO05D007193 6.5e-15 83.6 55 69.1
CANSAT01G1822 Cannabis sativa HOM05D005857 ORTHO05D007193 8.5e-15 83.2 53 71.7
PSO447G0367 Papaver somniferum HOM05D005857 ORTHO05D007193 8.5e-15 83.2 54 68.5
C08p16740 Brassica napus HOM05D005857 ORTHO05D007193 1.1e-14 82.8 68 58.8
BolC5t29979H Brassica oleracea HOM05D005857 ORTHO05D007193 1.1e-14 82.8 66 57.6
Thecc.06G020800 Theobroma cacao HOM05D005857 ORTHO05D007193 1.1e-14 82.8 55 67.3
AL1G26340 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 1.5e-14 82.4 54 68.5
AT1G14450 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 1.5e-14 82.4 54 68.5
BcaB03g13096 Brassica carinata HOM05D005857 ORTHO05D007193 1.5e-14 82.4 54 68.5
MBI03_g21081_MAGBIO Magnolia biondii HOM05D005857 ORTHO05D007193 1.5e-14 82.4 53 69.8
COL.COLO4_31107 Corchorus olitorius HOM05D005857 ORTHO05D007193 1.9e-14 82.0 55 67.3
FAN18G0749 Fragaria x ananassa HOM05D005857 ORTHO05D007193 2.5e-14 81.6 53 69.8
Sp1g12820 Schrenkiella parvula HOM05D005857 ORTHO05D007193 2.5e-14 81.6 65 58.5
BcaB08g34397 Brassica carinata HOM05D005857 ORTHO05D007193 3.2e-14 81.3 66 56.1
Thhalv10005238m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 3.2e-14 81.3 55 65.5
FvH4_5g27520 Fragaria vesca HOM05D005857 ORTHO05D007193 3.2e-14 81.3 53 67.9
QL02p103650 Quercus lobata HOM05D005857 ORTHO05D007193 3.2e-14 81.3 65 56.9
CARHR014900 Cardamine hirsuta HOM05D005857 ORTHO05D007193 4.2e-14 80.9 67 56.7
Duzib133G0295 Durio zibethinus HOM05D005857 ORTHO05D007193 4.2e-14 80.9 55 67.3
FAN04G0073 Fragaria x ananassa HOM05D005857 ORTHO05D007193 4.2e-14 80.9 53 69.8
PGR042G3007 Punica granatum HOM05D005857 ORTHO05D007193 4.2e-14 80.9 55 65.5
BcaC05g25348 Brassica carinata HOM05D005857 ORTHO05D007193 5.5e-14 80.5 54 66.7
A06p10470 Brassica napus HOM05D005857 ORTHO05D007193 5.5e-14 80.5 54 66.7
C05p12250 Brassica napus HOM05D005857 ORTHO05D007193 5.5e-14 80.5 54 66.7
BraA06t24227Z Brassica rapa HOM05D005857 ORTHO05D007193 5.5e-14 80.5 54 66.7
DCAR_001733 Daucus carota HOM05D005857 ORTHO05D007193 5.5e-14 80.5 55 67.3
Migut.B00707 Erythranthe guttata HOM05D005857 ORTHO05D007193 5.5e-14 80.5 55 67.3
Thhalv10009257m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 5.5e-14 80.5 54 66.7
TWI23G0165 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 5.5e-14 80.5 54 68.5
TWI59G0768 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 5.5e-14 80.5 55 67.3
BcaB07g30330 Brassica carinata HOM05D005857 ORTHO05D007193 7.2e-14 80.1 55 65.5
BcaC03g17146 Brassica carinata HOM05D005857 ORTHO05D007193 7.2e-14 80.1 55 65.5
C02p50660 Brassica napus HOM05D005857 ORTHO05D007193 7.2e-14 80.1 55 65.5
BolC2t11149H Brassica oleracea HOM05D005857 ORTHO05D007193 7.2e-14 80.1 55 65.5
BraA02t08316Z Brassica rapa HOM05D005857 ORTHO05D007193 7.2e-14 80.1 55 65.5
Carub.0005s0154 Capsella rubella HOM05D005857 ORTHO05D007193 7.2e-14 80.1 55 65.5
CARHR145070 Cardamine hirsuta HOM05D005857 ORTHO05D007193 7.2e-14 80.1 55 65.5
Os02g0564200 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 7.2e-14 80.1 54 64.8
Prupe.1G586500 Prunus persica HOM05D005857 ORTHO05D007193 7.2e-14 80.1 53 67.9
THA.LOC104805131 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 7.2e-14 80.1 66 51.5
Cpa.g.sc34.126 Carica papaya HOM05D005857 ORTHO05D007193 9.4e-14 79.7 55 63.6
Sp2g13760 Schrenkiella parvula HOM05D005857 ORTHO05D007193 9.4e-14 79.7 55 65.5
AT2G02510 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 1.2e-13 79.3 55 63.6
THA.LOC104801779 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 1.2e-13 79.3 61 59.0
Aa31LG1G600 Aethionema arabicum HOM05D005857 ORTHO05D007193 1.6e-13 79.0 56 64.3
Aqoxy5G01841 Aquilegia oxysepala HOM05D005857 ORTHO05D007193 1.6e-13 79.0 54 66.7
Carub.0001s1416 Capsella rubella HOM05D005857 ORTHO05D007193 1.6e-13 79.0 54 64.8
RcHm_v2.0_Chr7g0218891 Rosa chinensis HOM05D005857 ORTHO05D007193 1.6e-13 79.0 53 66.0
Aa31LG2G7600 Aethionema arabicum HOM05D005857 ORTHO05D007193 2.1e-13 78.6 55 63.6
TAR628G1233 Trochodendron aralioides HOM05D005857 ORTHO05D007193 2.1e-13 78.6 54 66.7
Zm00001eb244200 Zea mays HOM05D005857 ORTHO05D007193 3.6e-13 77.8 54 63.0
AL5G11780 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 6.1e-13 77.0 55 60.0
SHI07423 Sapria himalayana HOM05D005857 ORTHO05D007193 6.1e-13 77.0 67 55.2
MD08G1249300 Malus domestica HOM05D005857 ORTHO05D007193 8.0e-13 76.6 53 64.2
MD15G1444100 Malus domestica HOM05D005857 ORTHO05D007193 8.0e-13 76.6 53 64.2
CiPaw.06G177300 Carya illinoinensis HOM05D005857 ORTHO05D007193 1.4e-12 75.9 53 66.0
Lsat_1_v5_gn_9_124880 Lactuca sativa HOM05D005857 ORTHO05D007193 1.4e-12 75.9 47 74.5
Cfa004425 Carpinus fangiana HOM05D005857 ORTHO05D007193 1.8e-12 75.5 53 64.2
Haze_09965 Corylus avellana HOM05D005857 ORTHO05D007193 1.8e-12 75.5 53 64.2
FAN08G0400 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.8e-12 75.5 47 72.3
TPR.G6546 Trifolium pratense HOM05D005857 ORTHO05D007193 1.8e-12 75.5 50 68.0
Psat0s2555g0160 Pisum sativum HOM05D005857 ORTHO05D007193 2.3e-12 75.1 49 67.3
Sed0006374 Sechium edule HOM05D005857 ORTHO05D007193 2.3e-12 75.1 53 62.3
CiPaw.05G001000 Carya illinoinensis HOM05D005857 ORTHO05D007193 3.0e-12 74.7 53 64.2
ECA236G3879 Erigeron canadensis HOM05D005857 ORTHO05D007193 3.0e-12 74.7 53 64.2
Glyma.17G002300 Glycine max HOM05D005857 ORTHO05D007193 3.0e-12 74.7 48 70.8
Phvul.003G091000 Phaseolus vulgaris HOM05D005857 ORTHO05D007193 5.2e-12 73.9 50 64.0
Medtr4g134550 Medicago truncatula HOM05D005857 ORTHO05D007193 6.8e-12 73.6 52 61.5
Lalb_Chr12g0195891 Lupinus albus HOM05D005857 ORTHO05D007193 8.8e-12 73.2 48 66.7
Actinidia11730 Actinidia chinensis HOM05D005857 ORTHO05D007193 2.0e-11 72.0 45 71.1
FAN13G1483 Fragaria x ananassa HOM05D005857 ORTHO05D007193 2.0e-11 72.0 46 65.2
Lj4g0009904 Lotus japonicus HOM05D005857 ORTHO05D007193 2.0e-11 72.0 50 64.0
MD11G1276400 Malus domestica HOM05D005857 ORTHO05D007193 2.0e-11 72.0 51 62.7
unitig_8.g2962 Utricularia gibba HOM05D005857 ORTHO05D007193 4.4e-11 70.9 47 68.1
AUR62040136 Chenopodium quinoa HOM05D005857 ORTHO05D007193 5.7e-11 70.5 56 58.9
Ca_13524_v3 Cicer arietinum L. HOM05D005857 ORTHO05D007193 5.7e-11 70.5 58 56.9
Atru.chr6.134 Acer truncatum HOM05D005857 ORTHO05D007193 1.3e-10 69.3 48 64.6
Atru.chr6.187 Acer truncatum HOM05D005857 ORTHO05D007193 1.3e-10 69.3 48 64.6
AUR62032483 Chenopodium quinoa HOM05D005857 ORTHO05D007193 1.7e-10 68.9 56 58.9
BcaC07g41575 Brassica carinata HOM05D005857 ORTHO05D007193 2.8e-10 68.2 66 53.0
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 4.8e-10 67.4 56 57.1
EL10Ac3g06399 Beta vulgaris HOM05D005857 ORTHO05D007193 6.3e-10 67.0 45 62.2
Ciclev10003044m.g Citrus clementina HOM05D005857 ORTHO05D007193 1.1e-09 66.2 48 60.4
Ciclev10003046m.g Citrus clementina HOM05D005857 ORTHO05D007193 1.1e-09 66.2 48 60.4
BolC8t49293H Brassica oleracea HOM05D005857 ORTHO05D007193 4.1e-09 64.3 34 79.4
Zm00001eb182520 Zea mays HOM05D005857 ORTHO05D007193 7.0e-09 63.5 53 52.8
Zm00001eb353890 Zea mays HOM05D005857 ORTHO05D007193 9.1e-09 63.2 41 61.0
A02p32930 Brassica napus HOM05D005857 ORTHO05D007193 2.7e-08 61.6 45 60.0
Zm00001eb203220 Zea mays HOM05D005857 ORTHO05D007193 1.9e-06 55.5 42 54.8
GSVIVG01023132001 Vitis vinifera HOM05D005857 ORTHO05D007193 3.3e-06 54.7 30 76.7
Zm00001eb203730 Zea mays HOM05D005857 ORTHO05D007193 7.2e-06 53.5 41 53.7


User provided reference genes

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