Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 6.3e-97 357.5 182 100.0
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 8.8e-75 283.9 151 90.7
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 3.4e-74 282.0 151 92.7
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 5.7e-74 281.2 151 91.4
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.3e-73 280.0 151 90.7
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 8.3e-73 277.3 151 90.7
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 4.1e-72 275.0 152 88.8
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 5.4e-72 274.6 152 88.2
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 9.1e-72 273.9 151 87.4
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 9.1e-72 273.9 152 88.2
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 9.1e-72 273.9 151 90.7
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 2.0e-71 272.7 151 87.4
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 2.7e-71 272.3 151 88.1
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 3.5e-71 271.9 151 87.4
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 5.9e-71 271.2 150 87.3
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 5.9e-71 271.2 150 87.3
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 7.7e-71 270.8 154 85.1
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 1.3e-70 270.0 151 86.8
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.2e-70 269.2 148 87.8
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 2.9e-70 268.9 151 87.4
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 3.8e-70 268.5 151 87.4
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 3.8e-70 268.5 151 86.1
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 5.0e-70 268.1 151 85.4
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 6.5e-70 267.7 151 86.1
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 8.5e-70 267.3 150 87.3
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 8.5e-70 267.3 151 86.1
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 1.1e-69 266.9 151 85.4
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 1.5e-69 266.5 151 84.8
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 1.9e-69 266.2 151 85.4
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.5e-69 265.8 151 85.4
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 2.5e-69 265.8 151 84.8
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 2.5e-69 265.8 149 85.2
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 7.2e-69 264.2 150 88.0
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 7.2e-69 264.2 151 84.8
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 9.4e-69 263.8 151 85.4
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 1.2e-68 263.5 171 78.4
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 2.7e-68 262.3 151 83.4
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 2.7e-68 262.3 151 84.1
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 6.1e-68 261.2 151 84.1
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 6.1e-68 261.2 151 84.1
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 8.0e-68 260.8 172 75.0
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.0e-67 260.4 152 81.6
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 1.4e-67 260.0 152 83.6
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 1.4e-67 260.0 174 73.6
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.8e-67 259.6 150 82.7
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 1.8e-67 259.6 155 80.0
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 1.8e-67 259.6 152 80.3
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 1.8e-67 259.6 151 84.1
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 1.8e-67 259.6 151 82.1
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 2.3e-67 259.2 151 81.5
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 2.3e-67 259.2 152 80.3
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 2.3e-67 259.2 154 81.8
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 2.3e-67 259.2 151 83.4
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 3.0e-67 258.8 161 77.6
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 4.0e-67 258.5 152 83.6
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 5.2e-67 258.1 152 80.9
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 5.2e-67 258.1 151 82.1
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 8.8e-67 257.3 151 82.8
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 8.8e-67 257.3 145 84.8
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 1.2e-66 256.9 151 81.5
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 1.5e-66 256.5 152 81.6
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 1.5e-66 256.5 151 83.4
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 1.5e-66 256.5 169 76.3
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.0e-66 256.1 151 81.5
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 2.0e-66 256.1 151 82.1
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 2.0e-66 256.1 151 80.8
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 2.6e-66 255.8 149 83.9
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 2.6e-66 255.8 147 83.7
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 2.6e-66 255.8 151 82.1
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 3.4e-66 255.4 150 82.0
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 3.4e-66 255.4 151 82.1
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 3.4e-66 255.4 145 82.1
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 4.4e-66 255.0 153 83.0
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 5.7e-66 254.6 151 80.8
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 5.7e-66 254.6 151 80.1
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 9.8e-66 253.8 153 82.4
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.3e-65 253.4 153 82.4
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.3e-65 253.4 152 82.9
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 2.2e-65 252.7 150 82.0
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 2.8e-65 252.3 149 81.2
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 2.8e-65 252.3 151 80.1
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 3.7e-65 251.9 153 81.0
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 4.9e-65 251.5 151 76.2
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 6.3e-65 251.1 151 83.4
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 6.3e-65 251.1 151 82.1
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 6.3e-65 251.1 151 80.8
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 6.3e-65 251.1 151 76.8
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 8.3e-65 250.8 151 78.8
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.4e-64 250.0 153 82.4
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 3.1e-64 248.8 151 80.1
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 5.4e-64 248.1 151 80.8
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 5.4e-64 248.1 151 80.8
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 7.0e-64 247.7 151 78.1
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 9.2e-64 247.3 151 80.1
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 1.6e-63 246.5 151 80.8
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 2.0e-63 246.1 158 76.6
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 2.7e-63 245.7 154 78.6
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 7.7e-63 244.2 151 74.2
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 1.7e-62 243.0 150 75.3
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 2.9e-62 242.3 152 77.0
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 5.0e-62 241.5 150 83.3
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 4.3e-61 238.4 150 72.7
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 7.3e-61 237.7 150 74.0
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 1.2e-60 236.9 148 80.4
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 8.0e-60 234.2 150 73.3
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 8.0e-60 234.2 150 72.0
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 1.0e-59 233.8 153 70.6
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 1.0e-59 233.8 150 72.7
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 1.4e-59 233.4 150 72.7
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 1.8e-59 233.0 150 72.7
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 2.3e-59 232.6 157 68.8
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 2.3e-59 232.6 150 71.3
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 4.0e-59 231.9 150 73.3
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 4.0e-59 231.9 154 69.5
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 5.2e-59 231.5 151 71.5
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 3.4e-58 228.8 150 70.0
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 1.7e-57 226.5 150 70.7
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 4.9e-57 224.9 151 72.8
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 4.9e-57 224.9 151 72.8
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 9.2e-56 220.7 168 63.7
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 1.7e-54 216.5 151 71.5
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 5.0e-54 214.9 151 70.2
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 5.0e-54 214.9 143 72.0
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 1.6e-52 209.9 126 81.7
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 6.2e-52 208.0 120 84.2
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 1.4e-51 206.8 149 64.4
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 6.8e-51 204.5 152 59.9
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 1.2e-50 203.8 150 64.7
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 9.8e-50 200.7 122 81.1
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.7e-49 199.9 153 64.7
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 4.3e-45 185.3 109 78.0
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 7.3e-45 184.5 125 68.8
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 7.3e-45 184.5 109 77.1
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 2.1e-44 183.0 149 55.7
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 2.2e-41 172.9 180 55.0
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.2e-36 157.1 95 81.1
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 4.0e-35 152.1 149 47.7
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 7.1e-32 141.4 73 90.4
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 1.7e-30 136.7 120 61.7
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 8.6e-30 134.4 73 79.5
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.9e-29 133.3 71 85.9
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.9e-29 133.3 100 67.0
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 4.7e-28 128.6 165 42.4
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 8.1e-28 127.9 75 80.0
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 2.6e-26 122.9 79 77.2
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 5.8e-26 121.7 80 75.0
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.3e-25 120.6 65 86.2
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.9e-25 119.4 65 84.6
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 4.9e-25 118.6 75 80.0
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 4.9e-25 118.6 89 68.5
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 6.0e-23 111.7 149 40.3
Solyc12g043060.1 Solanum lycopersicum HOM05D005040 ORTHO05D005984 5.1e-14 82.0 48 89.6
TAR383G0869 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.1e-08 64.3 42 71.4
COL.COLO4_30360 Corchorus olitorius HOM05D005040 ORTHO05D005984 6.7e-06 55.1 29 86.2


User provided reference genes

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