Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008979g0010 Nicotiana tabacum HOM05D006641 ORTHO05D007573 8.5e-123 443.7 231 100.0
Nitab4.5_0001301g0080 Nicotiana tabacum HOM05D006641 ORTHO05D007573 3.1e-101 372.1 203 95.6
Peaxi162Scf00691g00003 Petunia axillaris HOM05D006641 ORTHO05D007573 6.8e-88 327.8 212 81.6
PGSC0003DMG400009037 Solanum tuberosum HOM05D006641 ORTHO05D007573 1.4e-80 303.5 203 78.8
Sopen01g031320 Solanum pennellii HOM05D006641 ORTHO05D007573 1.5e-79 300.1 203 77.8
Solyc01g079550.2 Solanum lycopersicum HOM05D006641 ORTHO05D007573 2.6e-79 299.3 203 77.3
Oeu008464.1 Olea europaea HOM05D006641 ORTHO05D007573 1.5e-58 230.3 202 62.9
Migut.D00088 Erythranthe guttata HOM05D006641 ORTHO05D007573 1.4e-48 197.2 207 53.6
SalBow3G3599 Salvia bowleyana HOM05D006641 ORTHO05D007573 1.2e-47 194.1 207 51.7
Hma1.2p1_0486F.1_g163110 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 2.6e-47 193.0 193 53.9
Hma1.2p1_0486F.1_g163121 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 2.6e-47 193.0 193 53.9
Duzib138G1609 Durio zibethinus HOM05D006641 ORTHO05D007573 8.4e-46 188.0 201 52.2
SGA_v2.0_scaffold376G50279 Striga asiatica HOM05D006641 ORTHO05D007573 1.1e-45 187.6 203 51.7
Dinv33109 Davidia involucrata HOM05D006641 ORTHO05D007573 2.4e-45 186.4 200 52.5
Thecc.01G311800 Theobroma cacao HOM05D006641 ORTHO05D007573 2.4e-45 186.4 191 52.9
QL12p020167 Quercus lobata HOM05D006641 ORTHO05D007573 3.5e-44 182.6 200 50.5
DCAR_005769 Daucus carota HOM05D006641 ORTHO05D007573 6.0e-44 181.8 205 48.8
Cc01_g21330 Coffea canephora HOM05D006641 ORTHO05D007573 7.8e-44 181.4 226 48.7
DCAR_002902 Daucus carota HOM05D006641 ORTHO05D007573 1.3e-43 180.6 204 51.0
Gorai.001G143700 Gossypium raimondii HOM05D006641 ORTHO05D007573 1.7e-43 180.3 195 51.8
Cfa005814 Carpinus fangiana HOM05D006641 ORTHO05D007573 2.3e-43 179.9 202 52.0
Gohir.D07G132300 Gossypium hirsutum HOM05D006641 ORTHO05D007573 3.0e-43 179.5 195 51.8
Gohir.A07G127900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 3.9e-43 179.1 195 51.3
CSS0030498 Camellia sinensis var. sinensis HOM05D006641 ORTHO05D007573 6.6e-43 178.3 200 47.5
Atru.chr5.1033 Acer truncatum HOM05D006641 ORTHO05D007573 1.1e-42 177.6 204 50.0
Sabra02G0160400 Salix brachista HOM05D006641 ORTHO05D007573 7.3e-42 174.9 190 53.2
Duzib211G0496 Durio zibethinus HOM05D006641 ORTHO05D007573 9.6e-42 174.5 201 48.3
Hma1.2p1_0212F.1_g090010 Hydrangea macrophylla HOM05D006641 ORTHO05D007573 1.2e-41 174.1 203 50.2
Duzib133G1491 Durio zibethinus HOM05D006641 ORTHO05D007573 1.6e-41 173.7 201 48.8
Ciclev10021856m.g Citrus clementina HOM05D006641 ORTHO05D007573 2.8e-41 172.9 194 49.5
vmacro02409 Vaccinium macrocarpon HOM05D006641 ORTHO05D007573 8.1e-41 171.4 208 50.0
Eucgr.H01054 Eucalyptus grandis HOM05D006641 ORTHO05D007573 1.1e-40 171.0 209 48.3
Medtr1g087230 Medicago truncatula HOM05D006641 ORTHO05D007573 1.4e-40 170.6 204 45.1
CsaV3_7G029900 Cucumis sativus L. HOM05D006641 ORTHO05D007573 1.8e-40 170.2 185 51.4
Ca_10290_v3 Cicer arietinum L. HOM05D006641 ORTHO05D007573 2.4e-40 169.9 204 47.1
Ca_30054_v3 Cicer arietinum L. HOM05D006641 ORTHO05D007573 2.4e-40 169.9 204 47.1
Manes.05G002600 Manihot esculenta HOM05D006641 ORTHO05D007573 2.4e-40 169.9 202 51.0
Lalb_Chr02g0146781 Lupinus albus HOM05D006641 ORTHO05D007573 3.1e-40 169.5 200 48.0
Prupe.8G270900 Prunus persica HOM05D006641 ORTHO05D007573 3.1e-40 169.5 200 48.0
COL.COLO4_23247 Corchorus olitorius HOM05D006641 ORTHO05D007573 6.9e-40 168.3 192 47.9
MELO3C015931.2 Cucumis melo HOM05D006641 ORTHO05D007573 6.9e-40 168.3 185 51.9
Lj5g0026629 Lotus japonicus HOM05D006641 ORTHO05D007573 1.2e-39 167.5 206 49.0
Sed0015554 Sechium edule HOM05D006641 ORTHO05D007573 1.2e-39 167.5 183 49.2
Potri.014G122100 Populus trichocarpa HOM05D006641 ORTHO05D007573 1.5e-39 167.2 201 49.8
Potri.002G196900 Populus trichocarpa HOM05D006641 ORTHO05D007573 2.6e-39 166.4 202 49.0
TAR362G0542 Trochodendron aralioides HOM05D006641 ORTHO05D007573 2.6e-39 166.4 200 46.5
FAN13G0974 Fragaria x ananassa HOM05D001136 ORTHO05D007573 3.4e-39 166.0 202 48.5
Actinidia27614 Actinidia chinensis HOM05D006641 ORTHO05D007573 4.4e-39 165.6 190 50.0
TWI36G0114 Tripterygium wilfordii HOM05D006641 ORTHO05D007573 5.8e-39 165.2 190 50.5
Lsat_1_v5_gn_9_2880 Lactuca sativa HOM05D006641 ORTHO05D007573 9.9e-39 164.5 214 47.2
TPR.G19761 Trifolium pratense HOM05D006641 ORTHO05D007573 9.9e-39 164.5 201 47.3
FAN04G2480 Fragaria x ananassa HOM05D001136 ORTHO05D007573 1.3e-38 164.1 204 46.6
ECA247G2557 Erigeron canadensis HOM05D006641 ORTHO05D007573 2.9e-38 162.9 208 49.0
FvH4_5g39350 Fragaria vesca HOM05D006641 ORTHO05D007573 2.9e-38 162.9 202 48.0
Rhsim13G0005400 Rhododendron simsii HOM05D006641 ORTHO05D007573 2.9e-38 162.9 205 46.8
Sabra14G0090500 Salix brachista HOM05D006641 ORTHO05D007573 2.9e-38 162.9 201 48.3
FAN08G0230 Fragaria x ananassa HOM05D001136 ORTHO05D007573 3.8e-38 162.5 202 48.0
FAN08G2922 Fragaria x ananassa HOM05D006641 ORTHO05D007573 3.8e-38 162.5 202 48.0
FAN18G1732 Fragaria x ananassa HOM05D001136 ORTHO05D007573 3.8e-38 162.5 202 48.0
Haze_05028 Corylus avellana HOM05D006641 ORTHO05D007573 6.4e-38 161.8 188 51.1
PGR119G1902 Punica granatum HOM05D006641 ORTHO05D007573 6.4e-38 161.8 213 46.9
CiPaw.07G116300 Carya illinoinensis HOM05D006641 ORTHO05D007573 8.4e-38 161.4 203 45.8
ClCG09G005170 Citrullus lanatus HOM05D006641 ORTHO05D007573 8.4e-38 161.4 201 48.3
Glyma.10G013800 Glycine max HOM05D006641 ORTHO05D007573 1.4e-37 160.6 207 44.9
MBI18_g28444_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 1.9e-37 160.2 184 48.9
RcHm_v2.0_Chr7g0241631 Rosa chinensis HOM05D006641 ORTHO05D007573 2.4e-37 159.8 204 47.1
PSO210G6531 Papaver somniferum HOM05D006641 ORTHO05D007573 3.2e-37 159.5 200 46.0
VMungo0007G0001 Vigna mungo HOM05D006641 ORTHO05D007573 3.2e-37 159.5 203 46.8
Glyma.19G215600 Glycine max HOM05D006641 ORTHO05D007573 4.2e-37 159.1 208 44.7
Nn3g21666 Nelumbo nucifera HOM05D006641 ORTHO05D007573 4.2e-37 159.1 203 47.8
Glyma.03G218800 Glycine max HOM05D006641 ORTHO05D007573 5.4e-37 158.7 201 46.3
Lj1g0024392 Lotus japonicus HOM05D006641 ORTHO05D007573 7.1e-37 158.3 201 46.8
VMungo1383G0778 Vigna mungo HOM05D006641 ORTHO05D007573 9.3e-37 157.9 201 44.3
Gohir.A08G119133 Gossypium hirsutum HOM05D006641 ORTHO05D007573 1.6e-36 157.1 202 45.5
Lalb_Chr15g0078301 Lupinus albus HOM05D006641 ORTHO05D007573 1.6e-36 157.1 205 47.3
Manes.01G226800 Manihot esculenta HOM05D006641 ORTHO05D007573 1.6e-36 157.1 202 47.5
Gohir.D08G139900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 2.7e-36 156.4 202 46.0
Gorai.004G144000 Gossypium raimondii HOM05D006641 ORTHO05D007573 2.7e-36 156.4 202 46.0
MD03G1296400 Malus domestica HOM05D006641 ORTHO05D007573 3.5e-36 156.0 203 46.3
HanXRQChr15g0465011 Helianthus annuus HOM05D006641 ORTHO05D007573 4.6e-36 155.6 193 47.2
Phvul.007G214900 Phaseolus vulgaris HOM05D006641 ORTHO05D007573 4.6e-36 155.6 199 46.2
PSO761G0656 Papaver somniferum HOM05D006641 ORTHO05D007573 6.0e-36 155.2 197 46.2
AUR62024668 Chenopodium quinoa HOM05D006641 ORTHO05D007573 1.7e-35 153.7 202 45.5
Phvul.001G212200 Phaseolus vulgaris HOM05D006641 ORTHO05D007573 2.3e-35 153.3 205 42.9
Aqoxy2G01829 Aquilegia oxysepala HOM05D006641 ORTHO05D007573 3.0e-35 152.9 204 45.1
Psat6g162160 Pisum sativum HOM05D006641 ORTHO05D007573 5.1e-35 152.1 202 42.6
EL10As5g23515 Beta vulgaris HOM05D006641 ORTHO05D007573 2.5e-34 149.8 206 43.7
MD11G1315800 Malus domestica HOM05D006641 ORTHO05D007573 4.3e-34 149.1 201 45.3
Psat3g020560 Pisum sativum HOM05D006641 ORTHO05D007573 4.3e-34 149.1 189 46.0
CANSAT25G1473 Cannabis sativa HOM05D006641 ORTHO05D007573 5.6e-34 148.7 197 45.2
Glyma.02G013200 Glycine max HOM05D006641 ORTHO05D007573 1.6e-33 147.1 200 43.0
Cpa.g.sc18.26 Carica papaya HOM05D006641 ORTHO05D007573 2.1e-33 146.7 205 44.4
AUR62011824 Chenopodium quinoa HOM05D006641 ORTHO05D007573 2.8e-33 146.4 202 45.5
Ah.11g049320 Amaranthus hybridus HOM05D000446 ORTHO05D000321 3.6e-33 146.0 204 42.2
Gohir.A12G125900 Gossypium hirsutum HOM05D006641 ORTHO05D007573 8.1e-33 144.8 190 46.3
Medtr7g109410 Medicago truncatula HOM05D006641 ORTHO05D007573 8.1e-33 144.8 202 43.1
MBI19_g24818_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 2.4e-32 143.3 184 44.6
arahy.Tifrunner.gnm1.ann1.DB9XMS Arachis hypogaea HOM05D006641 ORTHO05D007573 9.0e-32 141.4 209 44.0
Gohir.D12G129400 Gossypium hirsutum HOM05D006641 ORTHO05D007573 2.0e-31 140.2 184 45.1
Gorai.008G140500 Gossypium raimondii HOM05D006641 ORTHO05D007573 2.0e-31 140.2 184 45.1
TAR589G0002 Trochodendron aralioides HOM05D006641 ORTHO05D007573 9.9e-31 137.9 163 46.6
TAR633G2793 Trochodendron aralioides HOM05D006641 ORTHO05D007573 9.9e-31 137.9 163 46.6
PSO357G0224 Papaver somniferum HOM05D006641 ORTHO05D007573 4.2e-29 132.5 209 42.1
PSO170G1046 Papaver somniferum HOM05D006641 ORTHO05D007573 2.1e-28 130.2 209 41.6
THA.LOC104801302 Tarenaya hassleriana HOM05D006641 ORTHO05D007573 3.9e-27 125.9 219 39.7
CiPaw.08G090800 Carya illinoinensis HOM05D006641 ORTHO05D007573 2.1e-25 120.2 192 41.1
ATR0706G193 Amborella trichopoda HOM05D006641 ORTHO05D007573 4.8e-25 119.0 207 37.7
CARHR249590 Cardamine hirsuta HOM05D006641 ORTHO05D007573 6.9e-24 115.2 219 39.3
BraA09t35814Z Brassica rapa HOM05D001136 ORTHO05D007573 2.0e-23 113.6 231 39.0
BcaB01g02078 Brassica carinata HOM05D006641 ORTHO05D007573 4.5e-23 112.5 223 36.3
C09p01650 Brassica napus HOM05D001136 ORTHO05D007573 7.6e-23 111.7 229 38.0
BcaC04g24036 Brassica carinata HOM05D001136 ORTHO05D007573 9.9e-23 111.3 229 38.0
A09p01550 Brassica napus HOM05D006641 ORTHO05D007573 9.9e-23 111.3 231 38.1
BolC9t53098H Brassica oleracea HOM05D001136 ORTHO05D007573 9.9e-23 111.3 229 38.0
Sp6g01980 Schrenkiella parvula HOM05D006641 ORTHO05D007573 9.9e-23 111.3 234 35.5
AT4G02090 Arabidopsis thaliana HOM05D006641 ORTHO05D007573 2.5e-21 106.7 203 36.5
Aa31LG5G1730 Aethionema arabicum HOM05D006641 ORTHO05D007573 3.2e-21 106.3 208 38.0
AL6G51140 Arabidopsis lyrata HOM05D006641 ORTHO05D007573 3.2e-21 106.3 219 36.5
Carub.0006s3513 Capsella rubella HOM05D006641 ORTHO05D007573 2.1e-20 103.6 221 37.6
Thhalv10029320m.g Eutrema salsugineum HOM05D006641 ORTHO05D007573 3.0e-19 99.8 240 33.8
arahy.Tifrunner.gnm1.ann1.Q9I7GX Arachis hypogaea HOM05D006641 ORTHO05D007573 3.9e-19 99.4 174 37.4
Eucgr.K03540 Eucalyptus grandis HOM05D006641 ORTHO05D007573 4.8e-17 92.4 217 32.7
TPR.G4797 Trifolium pratense HOM05D006641 ORTHO05D007573 1.4e-16 90.9 147 40.8
Actinidia21410 Actinidia chinensis HOM05D000446 ORTHO05D000321 6.5e-14 82.0 129 41.1
Zm00001eb396340 Zea mays HOM05D006641 ORTHO05D007573 6.5e-14 82.0 214 31.8
Os03g0305200 Oryza sativa ssp. japonica HOM05D006641 ORTHO05D007573 4.2e-13 79.3 220 31.4
CDE05G1007 Ceratophyllum demersum HOM05D006641 ORTHO05D007573 7.1e-13 78.6 101 41.6
TWI75G0789 Tripterygium wilfordii HOM05D006641 ORTHO05D007573 1.3e-11 74.3 106 43.4
Zm00001eb014520 Zea mays HOM05D006641 ORTHO05D007573 5.7e-10 68.9 215 28.8
SEGI_04656 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 1.3e-09 67.8 190 33.2
Prupe.5G234600 Prunus persica HOM05D007478 ORTHO05D001700 2.4e-08 63.5 184 29.3
Gorai.001G084400 Gossypium raimondii HOM05D001935 ORTHO05D001700 9.0e-08 61.6 191 29.8
Gohir.D07G079675 Gossypium hirsutum HOM05D001935 ORTHO05D001700 2.0e-07 60.5 191 29.8
HPP92_018375 Vanilla planifolia HOM05D006641 ORTHO05D007573 2.0e-07 60.5 87 39.1
Gohir.A07G075100 Gossypium hirsutum HOM05D001935 ORTHO05D001700 2.6e-07 60.1 191 29.8
Psat4g000040 Pisum sativum HOM05D007478 ORTHO05D001700 4.5e-07 59.3 177 29.4
Lj4g0014270 Lotus japonicus HOM05D007478 ORTHO05D001700 5.9e-07 58.9 193 29.0
FAN08G3433 Fragaria x ananassa HOM05D007478 ORTHO05D001700 7.7e-07 58.5 196 29.1
RcHm_v2.0_Chr7g0178221 Rosa chinensis HOM05D007478 ORTHO05D001700 7.7e-07 58.5 198 28.3
ATR0326G051 Amborella trichopoda HOM05D001935 ORTHO05D001700 1.0e-06 58.2 197 28.4
SEGI_39105 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 1.3e-06 57.8 192 29.2
DCAR_007278 Daucus carota HOM05D001935 ORTHO05D001700 2.9e-06 56.6 81 38.3
CDE06G0938 Ceratophyllum demersum HOM05D001935 ORTHO05D001700 3.8e-06 56.2 91 36.3
FAN13G0345 Fragaria x ananassa HOM05D007478 ORTHO05D001700 3.8e-06 56.2 196 28.1
THA.LOC104802908 Tarenaya hassleriana HOM05D001935 ORTHO05D001700 3.8e-06 56.2 204 27.9
VMungo0251G2682 Vigna mungo HOM05D007478 ORTHO05D001700 3.8e-06 56.2 123 35.8
FvH4_5g17470 Fragaria vesca HOM05D007478 ORTHO05D001700 6.5e-06 55.5 196 27.6
Lj6P749T50 Lonicera japonica HOM05D001935 ORTHO05D001700 6.5e-06 55.5 190 27.4
Manes.14G171900 Manihot esculenta HOM05D007478 ORTHO05D001700 6.5e-06 55.5 194 25.8
TAR629G0885 Trochodendron aralioides HOM05D007478 ORTHO05D001700 8.5e-06 55.1 103 35.0


User provided reference genes

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