Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 3.1e-185 651.7 351 100.0
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.2e-123 447.2 351 70.1
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 1.4e-105 387.1 351 61.5
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 1.9e-105 386.7 351 61.5
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 5.4e-105 385.2 352 61.1
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 6.6e-103 378.3 351 60.7
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 3.3e-102 375.9 348 60.1
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 1.4e-89 334.0 351 52.4
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 5.4e-89 332.0 351 52.4
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 1.9e-86 323.6 351 49.6
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 1.4e-84 317.4 350 49.1
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 1.4e-84 317.4 350 51.4
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 1.8e-84 317.0 351 49.9
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 3.1e-84 316.2 350 51.4
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 1.2e-83 314.3 339 51.0
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 1.2e-83 314.3 306 54.6
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 2.6e-83 313.2 350 50.0
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 1.0e-82 311.2 324 52.8
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 1.3e-82 310.8 340 50.0
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 1.3e-82 310.8 306 53.9
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 3.8e-82 309.3 349 49.9
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.1e-81 307.8 305 53.1
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 3.2e-81 306.2 306 53.6
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 3.2e-81 306.2 337 50.7
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 7.1e-81 305.1 350 49.1
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 7.1e-81 305.1 341 49.9
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 9.3e-81 304.7 347 48.4
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 1.6e-80 303.9 317 50.8
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 3.5e-80 302.8 337 49.6
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 6.0e-80 302.0 306 52.0
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 6.0e-80 302.0 342 49.4
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 7.9e-80 301.6 352 47.2
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 1.0e-79 301.2 350 47.7
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 1.0e-79 301.2 353 47.0
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 1.3e-79 300.8 306 52.0
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 2.3e-79 300.1 343 48.1
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 3.9e-79 299.3 344 48.0
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.9e-79 299.3 344 48.0
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 3.9e-79 299.3 358 48.0
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 3.9e-79 299.3 353 47.6
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 5.1e-79 298.9 350 48.6
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 6.7e-79 298.5 350 48.3
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 8.7e-79 298.1 330 49.1
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 1.1e-78 297.7 348 48.0
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 1.5e-78 297.4 300 51.7
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 1.5e-78 297.4 355 47.3
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 3.3e-78 296.2 349 46.4
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 3.3e-78 296.2 349 46.7
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 5.7e-78 295.4 355 47.0
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 7.4e-78 295.0 352 46.3
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 9.6e-78 294.7 304 51.6
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 1.3e-77 294.3 350 48.3
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 2.8e-77 293.1 306 51.0
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 2.8e-77 293.1 301 52.2
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 4.8e-77 292.4 344 47.4
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 4.8e-77 292.4 302 51.7
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.4e-76 290.0 304 50.0
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 2.4e-76 290.0 304 50.0
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 5.3e-76 288.9 305 50.8
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 6.9e-76 288.5 347 46.7
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 1.2e-75 287.7 305 49.8
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 1.5e-75 287.3 351 45.6
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 1.5e-75 287.3 344 46.2
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.5e-75 287.3 344 46.2
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.5e-75 287.3 344 46.2
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 2.0e-75 287.0 344 46.2
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 2.6e-75 286.6 317 47.6
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 2.6e-75 286.6 317 47.9
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 2.6e-75 286.6 317 47.6
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 3.4e-75 286.2 304 51.3
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 3.4e-75 286.2 301 50.5
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 3.4e-75 286.2 301 50.5
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 3.4e-75 286.2 356 46.6
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 1.3e-74 284.3 317 47.6
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 1.3e-74 284.3 312 48.7
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 1.7e-74 283.9 316 46.8
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 2.2e-74 283.5 348 44.8
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 3.8e-74 282.7 348 45.1
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 3.8e-74 282.7 348 45.1
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 3.8e-74 282.7 350 44.6
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 5.0e-74 282.3 361 46.0
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 6.5e-74 282.0 315 47.3
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 8.4e-74 281.6 315 46.7
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 1.1e-73 281.2 349 44.4
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 1.4e-73 280.8 351 45.0
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 1.9e-73 280.4 312 47.4
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 2.5e-73 280.0 312 47.1
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 4.2e-73 279.3 296 50.3
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 7.1e-73 278.5 316 46.5
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 7.1e-73 278.5 312 48.1
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 7.1e-73 278.5 299 49.8
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 1.2e-72 277.7 299 50.5
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 1.2e-72 277.7 351 45.0
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 1.6e-72 277.3 436 41.3
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 2.1e-72 276.9 304 48.4
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 4.6e-72 275.8 355 43.4
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 1.3e-71 274.2 355 43.4
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 1.8e-71 273.9 349 45.3
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 1.1e-70 271.2 302 47.7
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 5.7e-70 268.9 292 49.3
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.3e-66 257.7 351 41.6
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 2.2e-66 256.9 350 45.4
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 3.8e-66 256.1 303 45.5
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 6.5e-66 255.4 342 44.2
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 2.1e-64 250.4 270 50.4
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 2.8e-61 240.0 298 44.0
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 5.0e-58 229.2 148 77.7
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 8.5e-58 228.4 354 41.8
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 1.2e-56 224.6 321 43.0
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 5.1e-55 219.2 359 39.6
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 5.1e-55 219.2 246 49.6
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 2.1e-48 197.2 234 47.4
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 3.6e-48 196.4 283 40.3
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 6.3e-45 185.7 340 35.0
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 7.7e-43 178.7 289 34.9
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 7.7e-43 178.7 244 43.4
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 2.2e-42 177.2 287 35.2
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 6.5e-42 175.6 102 81.4
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 6.5e-42 175.6 102 82.4
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 8.5e-42 175.3 287 36.9
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 1.5e-41 174.5 99 82.8
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 1.9e-41 174.1 99 82.8
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 1.2e-40 171.4 232 41.8
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 1.0e-39 168.3 146 56.2
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 1.3e-37 161.4 247 39.3
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 1.3e-37 161.4 99 75.8
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 1.3e-37 161.4 97 79.4
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 3.1e-36 156.8 288 31.2
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 9.4e-33 145.2 148 55.4
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 2.7e-32 143.7 286 34.3
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 8.0e-32 142.1 87 75.9
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 1.1e-28 131.7 84 69.0
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 5.6e-25 119.4 99 54.5
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 4.0e-23 113.2 68 73.5
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 2.0e-22 110.9 68 72.1
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 2.0e-22 110.9 68 72.1
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 2.0e-22 110.9 68 72.1
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 2.0e-22 110.9 68 72.1
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 2.0e-22 110.9 68 72.1
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 4.4e-22 109.8 82 58.5
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 5.7e-22 109.4 103 58.3
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 3.6e-16 90.1 105 46.7
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 1.8e-15 87.8 281 27.8
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 6.8e-15 85.9 97 42.3
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 1.4e-12 78.2 66 54.5
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 4.1e-12 76.6 43 76.7
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 4.1e-12 76.6 43 76.7
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 1.2e-11 75.1 48 68.8
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 6.0e-11 72.8 42 83.3
DCAR_032321 Daucus carota HOM05D004920 ORTHO05D005998 7.8e-11 72.4 94 40.4
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 1.7e-10 71.2 95 37.9
SEGI_14350 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 3.0e-10 70.5 56 58.9
BcaC01g03531 Brassica carinata HOM05D004920 ORTHO05D094784 3.9e-10 70.1 86 43.0
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 2.5e-09 67.4 55 60.0
Oeu019523.1 Olea europaea HOM05D004920 ORTHO05D005998 3.3e-09 67.0 45 64.4
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 7.3e-09 65.9 55 56.4
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 2.8e-08 63.9 47 63.8
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 3.6e-08 63.5 34 79.4
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 8.1e-08 62.4 39 69.2


User provided reference genes

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