Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008943g0020 Nicotiana tabacum HOM05D005052 ORTHO05D006226 8.9e-254 879.8 443 100.0
Nitab4.5_0001892g0080 Nicotiana tabacum HOM05D005052 ORTHO05D006226 1.0e-249 866.3 443 98.4
CAN.G1274.31 Capsicum annuum HOM05D005052 ORTHO05D006226 4.4e-237 824.3 443 93.7
Solyc02g083590.3 Solanum lycopersicum HOM05D005052 ORTHO05D006226 4.9e-236 820.8 444 93.7
Sopen02g028370 Solanum pennellii HOM05D005052 ORTHO05D006226 1.4e-235 819.3 444 93.5
PGSC0003DMG400003582 Solanum tuberosum HOM05D005052 ORTHO05D006226 1.2e-231 806.2 444 92.8
Peaxi162Scf00328g00523 Petunia axillaris HOM05D005052 ORTHO05D006226 1.8e-222 775.8 445 89.0
Cc07_g11060 Coffea canephora HOM05D005052 ORTHO05D006226 4.9e-212 741.1 443 83.5
Oeu048477.1 Olea europaea HOM05D005052 ORTHO05D006226 2.7e-202 708.8 454 79.7
SalBow3G4284 Salvia bowleyana HOM05D005052 ORTHO05D006226 8.7e-201 703.7 444 81.1
Actinidia22954 Actinidia chinensis HOM05D005052 ORTHO05D006226 3.1e-198 695.3 378 88.9
vmacro18426 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 1.2e-197 693.3 445 78.4
Lj4A222T51 Lonicera japonica HOM05D005052 ORTHO05D006226 2.0e-197 692.6 478 76.8
Migut.C00533 Erythranthe guttata HOM05D005052 ORTHO05D006226 5.8e-197 691.0 447 79.0
TWI53G1960 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 5.8e-197 691.0 399 84.7
CiPaw.07G061100 Carya illinoinensis HOM05D005052 ORTHO05D006226 1.3e-196 689.9 424 81.6
Dinv40116 Davidia involucrata HOM05D005052 ORTHO05D006226 8.4e-196 687.2 452 77.4
MELO3C013755.2 Cucumis melo HOM05D005052 ORTHO05D006226 1.1e-195 686.8 415 82.2
COL.COLO4_22462 Corchorus olitorius HOM05D005052 ORTHO05D006226 2.5e-195 685.6 440 78.0
CsaV3_3G000670 Cucumis sativus L. HOM05D005052 ORTHO05D006226 4.2e-195 684.9 414 82.6
GSVIVG01018732001 Vitis vinifera HOM05D005052 ORTHO05D006226 5.5e-195 684.5 462 75.8
RcHm_v2.0_Chr2g0099021 Rosa chinensis HOM05D005052 ORTHO05D006226 7.1e-195 684.1 418 81.6
MSTRG.2728 Avicennia marina HOM05D005052 ORTHO05D006226 1.6e-194 682.9 448 77.5
Sabra05G0090900 Salix brachista HOM05D005052 ORTHO05D006226 1.6e-194 682.9 439 78.1
SGA_v2.0_scaffold94G28549 Striga asiatica HOM05D005052 ORTHO05D006226 1.6e-194 682.9 449 77.5
Eucgr.J02467 Eucalyptus grandis HOM05D005052 ORTHO05D006226 2.7e-194 682.2 442 78.5
Gohir.D12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 3.5e-194 681.8 439 77.4
ClCG10G000590 Citrullus lanatus HOM05D005052 ORTHO05D006226 4.6e-194 681.4 415 81.9
CiPaw.08G130500 Carya illinoinensis HOM05D005052 ORTHO05D006226 7.9e-194 680.6 424 80.0
QL06p051082 Quercus lobata HOM05D005052 ORTHO05D006226 1.0e-193 680.2 408 82.1
VMungo1215G2918 Vigna mungo HOM05D005052 ORTHO05D006226 1.0e-193 680.2 440 78.6
Atru.chr3.855 Acer truncatum HOM05D005052 ORTHO05D006226 1.3e-193 679.9 406 84.0
Sc03g0003700 Simmondsia chinensis HOM05D005052 ORTHO05D006226 1.8e-193 679.5 444 77.9
CANSAT25G2560 Cannabis sativa HOM05D005052 ORTHO05D006226 3.9e-193 678.3 409 82.6
Duzib147G0491 Durio zibethinus HOM05D005052 ORTHO05D006226 5.1e-193 677.9 417 80.1
Rhsim08G0032100 Rhododendron simsii HOM05D005052 ORTHO05D006226 6.7e-193 677.6 387 84.5
Haze_03731 Corylus avellana HOM05D005052 ORTHO05D006226 8.7e-193 677.2 463 75.4
HanXRQChr13g0424561 Helianthus annuus HOM05D005052 ORTHO05D006226 8.7e-193 677.2 406 83.7
Cfa007001 Carpinus fangiana HOM05D005052 ORTHO05D006226 1.1e-192 676.8 449 76.6
Gohir.A12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 1.1e-192 676.8 439 77.2
THA.LOC104821339 Tarenaya hassleriana HOM05D005052 ORTHO05D006226 1.1e-192 676.8 442 78.5
Nn5g28565 Nelumbo nucifera HOM05D005052 ORTHO05D006226 1.5e-192 676.4 412 82.8
Glyma.11G078700 Glycine max HOM05D005052 ORTHO05D006226 1.9e-192 676.0 393 84.7
Gorai.008G062200 Gossypium raimondii HOM05D005052 ORTHO05D006226 1.9e-192 676.0 439 77.7
Thecc.01G014600 Theobroma cacao HOM05D005052 ORTHO05D006226 1.9e-192 676.0 417 81.1
FvH4_1g11430 Fragaria vesca HOM05D005052 ORTHO05D006226 2.5e-192 675.6 403 82.6
Sed0003793 Sechium edule HOM05D005052 ORTHO05D006226 4.3e-192 674.9 434 78.3
FAN28G0876 Fragaria x ananassa HOM05D005052 ORTHO05D006226 5.6e-192 674.5 417 80.3
Cpa.g.sc6.286 Carica papaya HOM05D005052 ORTHO05D006226 2.1e-191 672.5 425 79.3
Potri.005G110900 Populus trichocarpa HOM05D005052 ORTHO05D006226 2.1e-191 672.5 437 77.3
Glyma.01G164300 Glycine max HOM05D005052 ORTHO05D006226 2.8e-191 672.2 393 84.5
Prupe.7G171600 Prunus persica HOM05D005052 ORTHO05D006226 8.2e-191 670.6 414 80.2
FAN19G0738 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.4e-190 669.8 403 82.4
Nn1g06262 Nelumbo nucifera HOM05D005052 ORTHO05D006226 1.4e-190 669.8 396 83.1
TWI09G1579 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 1.4e-190 669.8 416 79.6
A09p10150 Brassica napus HOM05D005052 ORTHO05D006226 3.1e-190 668.7 443 76.5
CARHR281630 Cardamine hirsuta HOM05D005052 ORTHO05D006226 3.1e-190 668.7 423 80.6
MD15G1242600 Malus domestica HOM05D005052 ORTHO05D006226 3.1e-190 668.7 409 80.9
AUR62003338 Chenopodium quinoa HOM05D005052 ORTHO05D006226 5.3e-190 667.9 405 82.5
Thhalv10004219m.g Eutrema salsugineum HOM05D005052 ORTHO05D006226 5.3e-190 667.9 448 76.3
BolC9t54093H Brassica oleracea HOM05D005052 ORTHO05D006226 6.9e-190 667.5 438 77.2
BraA09t36659Z Brassica rapa HOM05D005052 ORTHO05D006226 6.9e-190 667.5 447 75.6
vmacro22193 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 6.9e-190 667.5 511 68.7
BcaB04g20124 Brassica carinata HOM05D005052 ORTHO05D006226 9.0e-190 667.2 434 78.8
PSO541G6199 Papaver somniferum HOM05D005052 ORTHO05D006226 9.0e-190 667.2 400 81.8
Ca_24920_v3 Cicer arietinum L. HOM05D005052 ORTHO05D006226 1.2e-189 666.8 437 76.4
PGR102G0465 Punica granatum HOM05D005052 ORTHO05D006226 3.4e-189 665.2 442 76.7
AUR62029500 Chenopodium quinoa HOM05D005052 ORTHO05D006226 7.6e-189 664.1 408 81.6
ECA240G3065 Erigeron canadensis HOM05D005052 ORTHO05D006226 7.6e-189 664.1 444 76.4
Lj2g0011110 Lotus japonicus HOM05D005052 ORTHO05D006226 7.6e-189 664.1 432 76.9
Phvul.002G106700 Phaseolus vulgaris HOM05D005052 ORTHO05D006226 7.6e-189 664.1 403 81.4
Aa31LG1G14600 Aethionema arabicum HOM05D005052 ORTHO05D006226 1.3e-188 663.3 372 86.6
BcaC04g23113 Brassica carinata HOM05D005052 ORTHO05D006226 1.3e-188 663.3 443 76.1
C09p12030 Brassica napus HOM05D005052 ORTHO05D006226 1.3e-188 663.3 443 76.1
Gorai.007G192400 Gossypium raimondii HOM05D005052 ORTHO05D006226 1.7e-188 662.9 410 80.5
Lalb_Chr09g0321611 Lupinus albus HOM05D005052 ORTHO05D006226 1.7e-188 662.9 434 77.9
Hund16503 Selenicereus undatus HOM05D005052 ORTHO05D006226 1.7e-188 662.9 446 76.0
arahy.Tifrunner.gnm1.ann1.1KVD1S Arachis hypogaea HOM05D005052 ORTHO05D006226 2.2e-188 662.5 442 76.5
arahy.Tifrunner.gnm1.ann1.PYN71E Arachis hypogaea HOM05D005052 ORTHO05D006226 2.2e-188 662.5 442 76.5
FAN23G2381 Fragaria x ananassa HOM05D005052 ORTHO05D006226 2.2e-188 662.5 402 81.8
FAN26G3360 Fragaria x ananassa HOM05D005052 ORTHO05D006226 2.2e-188 662.5 432 76.9
Medtr5g022580 Medicago truncatula HOM05D005052 ORTHO05D006226 3.8e-188 661.8 386 82.4
Carub.0008s2837 Capsella rubella HOM05D005052 ORTHO05D006226 6.5e-188 661.0 394 83.0
PSO675G6089 Papaver somniferum HOM05D005052 ORTHO05D006226 6.5e-188 661.0 400 81.2
Sp2g30570 Schrenkiella parvula HOM05D005052 ORTHO05D006226 6.5e-188 661.0 437 76.4
AT5G66120 Arabidopsis thaliana HOM05D005052 ORTHO05D006226 8.4e-188 660.6 423 78.7
AL8G45470 Arabidopsis lyrata HOM05D005052 ORTHO05D006226 1.1e-187 660.2 413 80.1
TPR.G10542 Trifolium pratense HOM05D005052 ORTHO05D006226 2.5e-187 659.1 383 82.2
ATR0712G043 Amborella trichopoda HOM05D005052 ORTHO05D006226 7.1e-187 657.5 447 73.8
TAR381G1626 Trochodendron aralioides HOM05D005052 ORTHO05D006226 6.0e-186 654.4 417 79.4
MBI05_g23388_MAGBIO Magnolia biondii HOM05D005052 ORTHO05D006226 1.3e-185 653.3 447 74.7
Gohir.D11G180500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 3.0e-185 652.1 378 84.7
Lalb_Chr05g0212261 Lupinus albus HOM05D005052 ORTHO05D006226 3.9e-185 651.7 442 75.1
Psat2g153160 Pisum sativum HOM05D005052 ORTHO05D006226 8.7e-185 650.6 386 80.8
DCAR_022909 Daucus carota HOM05D005052 ORTHO05D006226 7.4e-184 647.5 396 81.8
Gohir.A11G173500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 4.1e-182 641.7 368 85.1
Zm00001eb103800 Zea mays HOM05D005052 ORTHO05D006226 9.0e-182 640.6 412 77.4
Aqoxy4G02022 Aquilegia oxysepala HOM05D005052 ORTHO05D006226 3.4e-181 638.6 366 84.7
Os09g0539100 Oryza sativa ssp. japonica HOM05D005052 ORTHO05D006226 1.4e-179 633.3 382 80.6
HPP92_025914 Vanilla planifolia HOM05D005052 ORTHO05D006226 7.9e-178 627.5 384 77.9
HPP92_025909 Vanilla planifolia HOM05D005052 ORTHO05D006226 1.0e-177 627.1 384 77.9
Pp3c13_24150 Physcomitrium patens HOM05D005052 ORTHO05D006226 6.9e-174 614.4 438 69.9
Ciclev10025711m.g Citrus clementina HOM05D005052 ORTHO05D006226 3.4e-173 612.1 388 80.2
CSS0012363 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 1.4e-169 600.1 328 88.4
Mapoly0031s0094 Marchantia polymorpha HOM05D005052 ORTHO05D006226 7.4e-168 594.3 439 67.2
AagrBONN_evm.TU.Sc2ySwM_340.387 Anthoceros agrestis HOM05D005052 ORTHO05D006226 3.7e-167 592.0 385 73.5
SMO228G0049 Selaginella moellendorffii HOM05D005052 ORTHO05D006226 6.3e-167 591.3 364 77.2
Actinidia28717 Actinidia chinensis HOM05D005052 ORTHO05D006226 2.2e-164 582.8 447 69.8
Zm00001eb331970 Zea mays HOM05D005052 ORTHO05D006226 6.3e-159 564.7 380 75.3
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 2.0e-157 559.7 399 69.2
Lsat_1_v5_gn_3_125660 Lactuca sativa HOM05D005052 ORTHO05D006226 3.5e-157 558.9 421 70.5
DCAR_004732 Daucus carota HOM05D005052 ORTHO05D006226 7.2e-155 551.2 397 69.8
Actinidia17421 Actinidia chinensis HOM05D005052 ORTHO05D006226 5.3e-150 535.0 287 89.9
Cre08.g368950 Chlamydomonas reinhardtii HOM05D005052 ORTHO05D006226 3.8e-148 528.9 374 69.3
EL10Ac6g15523 Beta vulgaris HOM05D005052 ORTHO05D006226 1.0e-145 520.8 507 57.8
MCO01G625 Micromonas commoda HOM05D005052 ORTHO05D006226 8.3e-143 511.1 418 59.8
CDE04G1415 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 5.5e-139 498.4 287 82.6
Hma1.2p1_0315F.1_g122330 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 6.8e-137 491.5 376 68.6
Manes.02G107200 Manihot esculenta HOM05D005052 ORTHO05D006226 2.2e-135 486.5 325 75.7
Ah.03g149130 Amaranthus hybridus HOM05D005052 ORTHO05D006226 1.6e-130 470.3 293 80.5
PRCOL_00000314 Prasinoderma coloniale HOM05D005052 ORTHO05D006226 4.0e-129 465.7 378 60.1
SEGI_14262 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 3.4e-120 436.0 290 71.7
Dinv33661 Davidia involucrata HOM05D005052 ORTHO05D006226 3.5e-117 426.0 233 88.8
Hma1.2p1_2620F.1_g325580 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 2.3e-113 413.3 450 54.0
CDE02G2775 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.7e-111 407.1 314 65.6
SEGI_08539 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 3.4e-96 356.3 224 74.6
CDE02G1558 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 3.8e-87 326.2 256 66.0
SGA_v2.0_scaffold273G46395 Striga asiatica HOM05D005052 ORTHO05D006226 1.6e-82 310.8 243 64.2
Lsat_1_v5_gn_0_46241 Lactuca sativa HOM05D005052 ORTHO05D006226 9.3e-78 295.0 299 48.2
unitig_699.g19702 Utricularia gibba HOM05D005052 ORTHO05D006226 1.5e-75 287.7 161 87.0
TPR.G6592 Trifolium pratense HOM05D005052 ORTHO05D006226 7.4e-75 285.4 273 57.5
RcHm_v2.0_Chr2g0099011 Rosa chinensis HOM05D005052 ORTHO05D006226 6.2e-74 282.3 246 59.8
Haze_27270 Corylus avellana HOM05D005052 ORTHO05D006226 2.5e-67 260.4 355 43.4
Dinv33662 Davidia involucrata HOM05D005052 ORTHO05D006226 5.7e-59 232.6 212 63.2
Cfa024476 Carpinus fangiana HOM05D003566 ORTHO05D126353 9.1e-57 225.3 377 41.4
unitig_699.g19703 Utricularia gibba HOM05D005052 ORTHO05D006226 5.1e-52 209.5 176 67.0
Rhsim07G0143100 Rhododendron simsii HOM05D005052 ORTHO05D006226 7.2e-46 189.1 184 59.2
SEGI_40904 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.1e-43 181.8 113 77.0
Ah.03g149140 Amaranthus hybridus HOM05D000441 ORTHO05D000340 8.5e-31 139.0 77 84.4
SEGI_17140 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 8.8e-28 129.0 83 73.5
SEGI_34573 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 8.8e-28 129.0 83 73.5
MD02G1126200 Malus domestica HOM05D005052 ORTHO05D006226 8.3e-26 122.5 129 53.5
MD14G1099300 Malus domestica HOM05D005052 ORTHO05D006226 8.3e-26 122.5 129 53.5
Rhsim07G0135500 Rhododendron simsii HOM05D005052 ORTHO05D006226 1.6e-21 108.2 71 71.8
DCAR_004721 Daucus carota HOM05D005052 ORTHO05D006226 8.0e-21 105.9 113 52.2
CDE04G1456 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 4.0e-20 103.6 96 54.2
SEGI_22853 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 3.4e-19 100.5 69 68.1
Rhsim07G0135600 Rhododendron simsii HOM05D005052 ORTHO05D339393 1.6e-08 65.1 37 75.7
CSS0040013 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 3.5e-08 63.9 110 41.8


User provided reference genes

Program Settings