Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.1e-290 1002.7 514 100.0
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 9.2e-287 989.6 514 98.4
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 1.4e-258 896.0 517 88.8
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 8.4e-256 886.7 514 88.7
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 5.3e-242 840.9 521 84.3
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 2.8e-219 765.4 529 73.9
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 3.9e-213 745.0 524 74.6
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 1.7e-211 739.6 466 79.8
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 8.2e-211 737.3 526 74.1
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 2.6e-209 732.3 521 72.6
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 1.3e-208 729.9 536 70.0
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 3.8e-208 728.4 523 71.3
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 1.5e-207 726.5 522 72.8
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 1.9e-207 726.1 529 73.2
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 1.9e-207 726.1 521 72.6
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 4.2e-207 724.9 522 71.5
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 9.4e-207 723.8 521 72.4
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 1.2e-206 723.4 525 71.0
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 1.2e-206 723.4 522 72.6
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 1.6e-206 723.0 531 71.8
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 2.3e-205 719.2 518 70.7
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 2.0e-204 716.1 538 68.6
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 2.0e-204 716.1 518 70.1
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 5.7e-204 714.5 515 71.8
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 9.7e-204 713.8 433 82.9
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 1.1e-202 710.3 431 80.5
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 4.1e-202 708.4 518 70.1
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 1.7e-200 703.0 528 69.9
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 8.5e-200 700.7 526 70.2
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 1.9e-199 699.5 526 70.0
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 3.2e-199 698.7 523 69.6
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 3.2e-199 698.7 400 89.2
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 7.2e-199 697.6 548 67.3
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 7.2e-199 697.6 453 77.7
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 7.2e-199 697.6 531 68.9
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 9.4e-199 697.2 505 71.5
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 9.4e-199 697.2 505 71.5
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 1.2e-198 696.8 548 67.2
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 1.2e-198 696.8 518 69.3
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.1e-198 696.0 520 70.2
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.1e-198 696.0 517 70.6
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.7e-198 694.9 517 70.6
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 1.0e-197 693.7 524 68.9
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 2.3e-197 692.6 522 69.5
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 4.0e-197 691.8 525 69.7
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 8.8e-197 690.6 517 71.0
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 3.4e-196 688.7 524 69.5
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.4e-196 688.3 531 68.9
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 9.8e-196 687.2 452 75.2
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 2.8e-195 685.6 526 69.0
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 3.7e-195 685.3 433 79.0
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 6.3e-195 684.5 450 74.2
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 1.4e-194 683.3 526 68.6
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 1.4e-194 683.3 536 67.4
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 7.0e-194 681.0 523 67.7
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 2.0e-193 679.5 506 70.2
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 2.9e-192 675.6 530 67.4
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 4.2e-191 671.8 590 62.0
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 5.5e-191 671.4 531 65.3
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 9.5e-191 670.6 522 68.8
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 6.1e-190 667.9 531 66.7
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 1.5e-188 663.3 401 81.3
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 4.4e-188 661.8 526 66.7
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 1.7e-187 659.8 528 66.3
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 2.8e-187 659.1 449 72.6
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 2.0e-185 652.9 528 64.8
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 7.3e-183 644.4 528 65.2
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 1.6e-182 643.3 526 65.0
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 3.1e-181 639.0 517 66.3
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 4.0e-181 638.6 526 63.9
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 4.0e-181 638.6 526 64.3
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 4.0e-181 638.6 526 64.3
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 4.0e-181 638.6 529 64.1
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 8.9e-181 637.5 547 62.0
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 1.5e-180 636.7 805 47.7
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 2.9e-179 632.5 517 65.4
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 3.7e-179 632.1 542 62.9
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 1.9e-178 629.8 526 63.5
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 3.2e-178 629.0 528 64.2
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 7.0e-178 627.9 517 63.2
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 2.0e-177 626.3 526 62.7
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 6.0e-177 624.8 518 63.7
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 7.8e-177 624.4 530 62.8
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 2.3e-176 622.9 517 62.9
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 3.0e-176 622.5 520 63.3
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 1.5e-175 620.2 483 64.6
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 3.3e-175 619.0 523 63.3
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 2.8e-174 615.9 545 59.8
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 1.4e-170 603.6 403 74.4
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 1.9e-170 603.2 390 76.9
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 1.9e-170 603.2 392 76.5
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.6e-169 600.1 410 72.2
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 4.3e-167 592.0 511 63.2
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 3.2e-162 575.9 478 63.0
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 4.6e-161 572.0 448 65.0
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 7.8e-161 571.2 476 64.1
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 1.0e-160 570.9 467 63.0
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.5e-159 567.0 547 57.4
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 8.1e-158 561.2 465 63.4
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 1.1e-157 560.8 422 70.1
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 5.2e-157 558.5 437 67.0
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 2.6e-156 556.2 526 59.1
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 6.4e-155 551.6 411 70.3
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.4e-154 550.4 531 58.9
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 5.4e-154 548.5 570 53.5
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 2.0e-148 530.0 555 53.7
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 4.5e-140 502.3 525 57.3
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 5.8e-140 501.9 467 56.5
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 2.2e-139 500.0 451 59.6
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 2.9e-131 473.0 535 51.4
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 5.5e-130 468.8 466 53.4
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 4.1e-125 452.6 468 51.3
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 5.3e-117 425.6 408 57.4
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 5.0e-115 419.1 449 51.7
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 6.5e-115 418.7 544 46.9
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 7.7e-92 342.0 438 45.2
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 1.9e-90 337.4 282 67.7
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 2.3e-88 330.5 444 43.2
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 7.5e-87 325.5 299 57.2
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 1.7e-86 324.3 216 72.7
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 7.7e-84 315.5 365 49.9
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 7.2e-82 308.9 399 48.9
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 4.1e-77 293.1 502 37.5
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 1.1e-74 285.0 229 68.1
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 2.3e-59 234.2 187 64.2
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 3.1e-56 223.8 445 39.6
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 2.4e-53 214.2 158 67.1
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 3.2e-53 213.8 159 64.2
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 3.2e-53 213.8 267 47.2
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 1.1e-50 205.3 116 90.5
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 2.3e-48 197.6 246 47.2
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 6.8e-48 196.1 246 46.3
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.8e-38 163.7 241 44.4
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 8.4e-38 162.5 355 33.5
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 3.2e-37 160.6 127 70.9
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 4.2e-37 160.2 122 68.9
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 1.2e-36 158.7 250 42.8
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 1.6e-36 158.3 145 57.2
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 1.0e-35 155.6 97 80.4
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 3.9e-35 153.7 243 42.8
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 8.7e-35 152.5 138 58.0
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 6.2e-33 146.4 101 73.3
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 1.1e-32 145.6 100 73.0
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 1.8e-32 144.8 101 72.3
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 1.2e-31 142.1 100 68.0
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 2.9e-30 137.5 116 61.2
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 5.4e-29 133.3 135 54.1
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 3.0e-27 127.5 149 51.7
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 1.8e-24 118.2 79 73.4
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 1.2e-23 115.5 131 54.2
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 2.2e-22 111.3 221 37.1
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 2.2e-22 111.3 221 37.1
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 3.2e-21 107.5 235 34.9
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 9.6e-18 95.9 64 75.0
arahy.Tifrunner.gnm1.ann1.LXEN71 Arachis hypogaea HOM05D000344 ORTHO05D005296 2.4e-16 91.3 63 68.3
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 1.2e-15 89.0 153 34.6
arahy.Tifrunner.gnm1.ann1.2FV8W6 Arachis hypogaea HOM05D000344 ORTHO05D005296 1.5e-15 88.6 63 66.7
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 3.4e-15 87.4 94 43.6
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 2.3e-11 74.7 68 55.9
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 4.3e-10 70.5 116 41.4
C02p01250 Brassica napus HOM05D004140 ORTHO05D010099 1.0e-06 59.3 43 72.1
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 2.2e-06 58.2 45 64.4
C02p01230 Brassica napus HOM05D004140 ORTHO05D024608 2.2e-06 58.2 38 63.2
C02p01370 Brassica napus HOM05D004140 ORTHO05D024608 2.2e-06 58.2 38 63.2
C02p01440 Brassica napus HOM05D004140 ORTHO05D024608 2.2e-06 58.2 38 63.2
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 2.2e-06 58.2 45 64.4
BolC2t06113H Brassica oleracea HOM05D004140 ORTHO05D024608 2.2e-06 58.2 38 63.2
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 2.2e-06 58.2 45 64.4


User provided reference genes

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