Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008858g0060 Nicotiana tabacum HOM05D005946 ORTHO05D007340 1.0e-47 193.0 93 100.0
Nitab4.5_0001841g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 8.6e-34 146.7 84 85.7
Solyc06g068780.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 3.3e-33 144.8 70 98.6
Sopen06g026060 Solanum pennellii HOM05D005946 ORTHO05D007340 3.3e-33 144.8 70 98.6
PGSC0003DMG400025576 Solanum tuberosum HOM05D005946 ORTHO05D007340 3.3e-33 144.8 70 98.6
CAN.G1089.18 Capsicum annuum HOM05D005946 ORTHO05D007340 1.2e-32 142.9 70 97.1
Cc00_g13530 Coffea canephora HOM05D005946 ORTHO05D007340 4.7e-32 141.0 70 95.7
Manes.12G013300 Manihot esculenta HOM05D005946 ORTHO05D007340 4.7e-32 141.0 70 94.3
Manes.13G017850 Manihot esculenta HOM05D005946 ORTHO05D007340 4.7e-32 141.0 70 94.3
PGR004G0564 Punica granatum HOM05D005946 ORTHO05D007340 4.7e-32 141.0 70 92.9
CAN.G843.5 Capsicum annuum HOM05D005946 ORTHO05D007340 6.2e-32 140.6 70 95.7
Solyc03g118140.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 6.2e-32 140.6 70 95.7
Sopen03g037060 Solanum pennellii HOM05D005946 ORTHO05D007340 6.2e-32 140.6 70 95.7
TWI36G1309 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 8.1e-32 140.2 70 92.9
EL10Ac6g13474 Beta vulgaris HOM05D005946 ORTHO05D007340 1.1e-31 139.8 70 92.9
Potri.008G176801 Populus trichocarpa HOM05D005946 ORTHO05D007340 1.8e-31 139.0 70 92.9
Potri.010G058300 Populus trichocarpa HOM05D005946 ORTHO05D007340 1.8e-31 139.0 70 92.9
TWI36G1530 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 1.8e-31 139.0 70 91.4
TWI14G1045 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 2.3e-31 138.7 70 91.4
CiPaw.06G100600 Carya illinoinensis HOM05D005946 ORTHO05D007340 3.1e-31 138.3 70 91.4
Duzib251G0400 Durio zibethinus HOM05D005946 ORTHO05D007340 3.1e-31 138.3 70 92.9
Gohir.A03G127300 Gossypium hirsutum HOM05D005946 ORTHO05D007340 3.1e-31 138.3 70 92.9
Gorai.005G169000 Gossypium raimondii HOM05D005946 ORTHO05D007340 3.1e-31 138.3 70 92.9
Thecc.02G276900 Theobroma cacao HOM05D005946 ORTHO05D007340 3.1e-31 138.3 70 92.9
Dinv14819 Davidia involucrata HOM05D005946 ORTHO05D007340 6.8e-31 137.1 70 92.9
Duzib248G1204 Durio zibethinus HOM05D005946 ORTHO05D007340 6.8e-31 137.1 70 91.4
Eucgr.B03471 Eucalyptus grandis HOM05D005946 ORTHO05D007340 6.8e-31 137.1 70 91.4
CiPaw.05G112200 Carya illinoinensis HOM05D005946 ORTHO05D007340 8.9e-31 136.7 70 91.4
Migut.B01726 Erythranthe guttata HOM05D005946 ORTHO05D007340 8.9e-31 136.7 70 92.9
Migut.N01429 Erythranthe guttata HOM05D005946 ORTHO05D007340 8.9e-31 136.7 70 94.3
Rhsim12G0028200 Rhododendron simsii HOM05D005946 ORTHO05D007340 2.0e-30 135.6 70 90.0
Sed0027475 Sechium edule HOM05D005946 ORTHO05D007340 2.0e-30 135.6 70 90.0
Gohir.D02G150700 Gossypium hirsutum HOM05D005946 ORTHO05D007340 2.6e-30 135.2 70 91.4
SalBow5G0243 Salvia bowleyana HOM05D005946 ORTHO05D007340 2.6e-30 135.2 70 92.9
SalBow5G1014 Salvia bowleyana HOM05D005946 ORTHO05D007340 2.6e-30 135.2 70 92.9
Ciclev10033263m.g Citrus clementina HOM05D005946 ORTHO05D007340 4.4e-30 134.4 70 88.6
Gorai.002G192200 Gossypium raimondii HOM05D005946 ORTHO05D007340 4.4e-30 134.4 70 90.0
MSTRG.28215 Avicennia marina HOM05D005946 ORTHO05D007340 9.8e-30 133.3 70 91.4
CSS0024427 Camellia sinensis var. sinensis HOM05D005946 ORTHO05D007340 9.8e-30 133.3 70 88.6
Rhsim07G0080600 Rhododendron simsii HOM05D005946 ORTHO05D007340 1.3e-29 132.9 70 90.0
Lsat_1_v5_gn_6_8840 Lactuca sativa HOM05D005946 ORTHO05D007340 2.2e-29 132.1 70 88.6
TPR.G21803 Trifolium pratense HOM05D005946 ORTHO05D007340 2.9e-29 131.7 70 87.1
arahy.Tifrunner.gnm1.ann1.55451G Arachis hypogaea HOM05D005946 ORTHO05D007340 3.7e-29 131.3 70 87.1
unitig_747.g21988 Utricularia gibba HOM05D005946 ORTHO05D007340 3.7e-29 131.3 70 91.4
Aa31LG10G8610 Aethionema arabicum HOM05D005946 ORTHO05D007340 6.4e-29 130.6 70 87.1
CANSAT21G2474 Cannabis sativa HOM05D005946 ORTHO05D007340 6.4e-29 130.6 70 87.1
ECA246G0405 Erigeron canadensis HOM05D005946 ORTHO05D007340 6.4e-29 130.6 70 87.1
HanXRQChr17g0534681 Helianthus annuus HOM05D005946 ORTHO05D007340 6.4e-29 130.6 70 87.1
Lsat_1_v5_gn_3_12801 Lactuca sativa HOM05D005946 ORTHO05D007340 6.4e-29 130.6 70 87.1
Phvul.001G260400 Phaseolus vulgaris HOM05D005946 ORTHO05D007340 6.4e-29 130.6 70 85.7
CARHR192660 Cardamine hirsuta HOM05D005946 ORTHO05D007340 8.3e-29 130.2 70 87.1
Thhalv10015210m.g Eutrema salsugineum HOM05D005946 ORTHO05D007340 8.3e-29 130.2 70 87.1
HanXRQChr07g0190741 Helianthus annuus HOM05D005946 ORTHO05D007340 8.3e-29 130.2 70 87.1
Medtr3g085600 Medicago truncatula HOM05D005946 ORTHO05D007340 8.3e-29 130.2 70 85.7
PGR102G2803 Punica granatum HOM05D005946 ORTHO05D007340 8.3e-29 130.2 70 84.3
Sp6g24240 Schrenkiella parvula HOM05D005946 ORTHO05D007340 8.3e-29 130.2 70 87.1
THA.LOC109116592 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 8.3e-29 130.2 70 87.1
SalBow3G2240 Salvia bowleyana HOM05D005946 ORTHO05D007340 1.1e-28 129.8 70 90.0
A10p19740 Brassica napus HOM05D005946 ORTHO05D007340 1.4e-28 129.4 72 83.3
C09p56030 Brassica napus HOM05D005946 ORTHO05D007340 1.4e-28 129.4 77 77.9
BolC9t58470H Brassica oleracea HOM05D005946 ORTHO05D007340 1.4e-28 129.4 77 77.9
BraA10t44050Z Brassica rapa HOM05D005946 ORTHO05D007340 1.4e-28 129.4 72 83.3
A03p09890 Brassica napus HOM05D005946 ORTHO05D007340 1.9e-28 129.0 70 85.7
BolC3t13619H Brassica oleracea HOM05D005946 ORTHO05D007340 1.9e-28 129.0 70 85.7
BraA03t10302Z Brassica rapa HOM05D005946 ORTHO05D007340 1.9e-28 129.0 70 85.7
Glyma.11G249100 Glycine max HOM05D005946 ORTHO05D007340 1.9e-28 129.0 70 84.3
Nn3g18946 Nelumbo nucifera HOM05D005946 ORTHO05D007340 1.9e-28 129.0 68 88.2
TAR374G1140 Trochodendron aralioides HOM05D005946 ORTHO05D007340 1.9e-28 129.0 70 87.1
vmacro01071 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 1.9e-28 129.0 70 85.7
AL6G31720 Arabidopsis lyrata HOM05D005946 ORTHO05D007340 2.4e-28 128.6 70 85.7
AT5G20165 Arabidopsis thaliana HOM05D005946 ORTHO05D007340 2.4e-28 128.6 70 85.7
Carub.0006s1856 Capsella rubella HOM05D005946 ORTHO05D007340 2.4e-28 128.6 70 85.7
Actinidia27305 Actinidia chinensis HOM05D005946 ORTHO05D007340 4.1e-28 127.9 70 85.7
CDE10G0705 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 4.1e-28 127.9 70 84.3
MD14G1133000 Malus domestica HOM05D005946 ORTHO05D007340 4.1e-28 127.9 70 85.7
MBI07_g24770_MAGBIO Magnolia biondii HOM05D005946 ORTHO05D007340 7.1e-28 127.1 70 84.3
SEGI_28367 Sequoiadendron giganteum HOM05D005946 ORTHO05D007340 7.1e-28 127.1 70 84.3
PSO063G0123 Papaver somniferum HOM05D005946 ORTHO05D007340 1.2e-27 126.3 70 84.3
PSO170G6765 Papaver somniferum HOM05D005946 ORTHO05D007340 1.2e-27 126.3 70 84.3
Prupe.5G124600 Prunus persica HOM05D005946 ORTHO05D007340 1.2e-27 126.3 70 82.9
Zm00001eb237180 Zea mays HOM05D005946 ORTHO05D007340 1.2e-27 126.3 73 78.1
Lj4g0023384 Lotus japonicus HOM05D005946 ORTHO05D007340 1.6e-27 125.9 70 82.9
FvH4_5g11580 Fragaria vesca HOM05D005946 ORTHO05D007340 2.7e-27 125.2 70 84.3
Lalb_Chr05g0223941 Lupinus albus HOM05D005946 ORTHO05D007340 3.5e-27 124.8 70 82.9
Os02g0299600 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 3.5e-27 124.8 70 80.0
Os05g0251500 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 3.5e-27 124.8 70 82.9
Lalb_Chr09g0332191 Lupinus albus HOM05D005946 ORTHO05D007340 6.0e-27 124.0 70 84.3
MD06G1111800 Malus domestica HOM05D005946 ORTHO05D007340 6.0e-27 124.0 70 82.9
Mapoly0008s0042 Marchantia polymorpha HOM05D005946 ORTHO05D007340 7.8e-27 123.6 74 79.7
Psat7g023880 Pisum sativum HOM05D005946 ORTHO05D007340 2.5e-25 118.6 70 78.6
THA.LOC104799646 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 2.5e-25 118.6 89 68.5
unitig_0.g1509 Utricularia gibba HOM05D005946 ORTHO05D007340 2.5e-25 118.6 69 85.5
CDE10G0420 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 5.6e-25 117.5 62 85.5
vmacro14062 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 1.2e-24 116.3 62 85.5
arahy.Tifrunner.gnm1.ann1.XCNA8V Arachis hypogaea HOM05D005946 ORTHO05D007340 1.6e-24 115.9 103 59.2
RcHm_v2.0_Chr4g0430651 Rosa chinensis HOM05D005946 ORTHO05D007340 6.2e-24 114.0 68 77.9
AagrBONN_evm.TU.Sc2ySwM_228.3656 Anthoceros agrestis HOM05D005946 ORTHO05D007340 8.1e-24 113.6 70 72.9
Pp3s128_20 Physcomitrium patens HOM05D005946 ORTHO05D007340 3.1e-23 111.7 70 74.3
FvH4_4g23990 Fragaria vesca HOM05D005946 ORTHO05D007340 4.0e-23 111.3 68 77.9
Sabra08G0134600 Salix brachista HOM05D005946 ORTHO05D007340 3.7e-21 104.8 144 45.8
Cre07.g325735 Chlamydomonas reinhardtii HOM05D005946 ORTHO05D007340 2.4e-20 102.1 70 65.7
Peaxi162Scf00314g00635 Petunia axillaris HOM05D005946 ORTHO05D007340 2.7e-19 98.6 49 93.9
MELO3C030289.2 Cucumis melo HOM05D005946 ORTHO05D007340 3.5e-19 98.2 73 67.1
CsaV3_6G032330 Cucumis sativus L. HOM05D003413 ORTHO05D004197 6.0e-19 97.4 58 79.3
SGA_v2.0_scaffold11G05656 Striga asiatica HOM05D000612 ORTHO05D000461 3.9e-18 94.7 48 93.8
C03p11470 Brassica napus HOM05D005946 ORTHO05D007340 8.6e-18 93.6 55 78.2
Actinidia22739 Actinidia chinensis HOM05D005946 ORTHO05D007340 1.1e-17 93.2 62 74.2
Glyma.18G008200 Glycine max HOM05D005946 ORTHO05D007340 3.3e-17 91.7 61 72.1
TPR.G37229 Trifolium pratense HOM05D005946 ORTHO05D007340 4.7e-16 87.8 55 74.5
Nn1g00299 Nelumbo nucifera HOM05D005946 ORTHO05D007340 8.1e-16 87.0 44 84.1
RcHm_v2.0_Chr5g0020411 Rosa chinensis HOM05D005946 ORTHO05D007340 4.0e-15 84.7 75 53.3
MCO08G327 Micromonas commoda HOM05D005946 ORTHO05D007340 2.0e-14 82.4 62 64.5
ATR0955G005 Amborella trichopoda HOM05D005946 ORTHO05D007340 1.7e-13 79.3 49 73.5
Dinv16088 Davidia involucrata HOM05D005946 ORTHO05D007340 1.7e-13 79.3 48 77.1
FAN07G2898 Fragaria x ananassa HOM05D005946 ORTHO05D007340 3.8e-13 78.2 61 63.9
FvH4_3g12470 Fragaria vesca HOM05D005946 ORTHO05D045642 4.9e-13 77.8 74 50.0
PRCOL_00003875 Prasinoderma coloniale HOM05D005946 ORTHO05D007340 6.4e-13 77.4 70 52.9
HPP92_000512 Vanilla planifolia HOM05D005946 ORTHO05D007340 1.4e-12 76.3 38 84.2
Sed0005468 Sechium edule HOM05D005946 ORTHO05D007340 1.9e-12 75.9 69 58.0
SHI17703 Sapria himalayana HOM05D005946 ORTHO05D007340 2.4e-12 75.5 37 91.9
Nitab4.5_0005774g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 5.4e-12 74.3 34 100.0
FAN17G0158 Fragaria x ananassa HOM05D005946 ORTHO05D007340 7.1e-12 73.9 68 57.4
ClCG08G010140 Citrullus lanatus HOM05D005946 ORTHO05D007340 1.2e-11 73.2 37 86.5
FAN12G4044 Fragaria x ananassa HOM05D005946 ORTHO05D007340 1.2e-11 73.2 47 74.5
Peaxi162Scf00207g00238 Petunia axillaris HOM05D005946 ORTHO05D007340 3.5e-11 71.6 36 91.7
Sabra10G0047000 Salix brachista HOM05D005946 ORTHO05D007340 4.6e-11 71.2 42 78.6
Psat5g094720 Pisum sativum HOM05D005946 ORTHO05D007340 2.3e-10 68.9 46 69.6
arahy.Tifrunner.gnm1.ann1.K0QS2G Arachis hypogaea HOM05D005946 ORTHO05D007340 8.7e-10 67.0 42 73.8
FAN04G2943 Fragaria x ananassa HOM05D005946 ORTHO05D007340 1.6e-08 62.8 39 74.4
FAN08G3074 Fragaria x ananassa HOM05D005946 ORTHO05D007340 1.6e-08 62.8 39 74.4
FAN18G3129 Fragaria x ananassa HOM05D005946 ORTHO05D007340 1.6e-08 62.8 39 74.4
RcHm_v2.0_Chr7g0186171 Rosa chinensis HOM05D005946 ORTHO05D007340 2.8e-08 62.0 36 80.6
Nitab4.5_0000976g0200 Nicotiana tabacum HOM05D005946 ORTHO05D007340 9.9e-06 53.5 27 88.9


User provided reference genes

Program Settings