Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 0.0e+00 1187.2 603 100.0
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 0.0e+00 1120.9 599 95.7
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 6.5e-292 1006.9 600 85.8
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 2.5e-291 1005.0 633 83.6
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 2.5e-291 1005.0 630 83.8
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 6.1e-290 1000.3 623 83.1
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 1.3e-287 992.6 609 84.7
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 2.8e-287 991.5 582 85.6
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.2e-285 986.1 582 85.4
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 1.7e-284 982.2 582 85.2
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 3.8e-284 981.1 582 85.1
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 7.2e-283 976.9 623 82.2
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 1.3e-279 966.1 579 84.8
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 1.7e-279 965.7 578 84.6
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 2.8e-279 964.9 578 85.1
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 3.7e-279 964.5 597 83.2
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 2.9e-276 954.9 579 83.4
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 5.0e-276 954.1 586 82.9
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 5.6e-275 950.7 579 83.2
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 7.5e-272 940.3 573 82.7
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 1.3e-271 939.5 612 80.2
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 2.2e-271 938.7 590 81.2
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 2.4e-270 935.3 604 79.1
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 9.2e-270 933.3 597 79.9
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 2.7e-269 931.8 602 79.7
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 1.7e-268 929.1 579 81.9
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 6.6e-268 927.2 575 81.6
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 1.5e-267 926.0 603 78.8
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 2.5e-267 925.2 584 82.4
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 5.6e-267 924.1 603 78.4
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 7.3e-267 923.7 575 81.6
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 7.3e-267 923.7 575 80.7
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 9.5e-267 923.3 571 80.7
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 9.5e-267 923.3 580 81.4
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 1.2e-266 922.9 603 78.4
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 4.0e-265 917.9 597 79.1
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.2e-264 916.4 573 80.6
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.2e-264 916.4 606 78.4
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 1.5e-264 916.0 571 81.1
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 3.4e-264 914.8 577 81.1
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 4.4e-264 914.4 573 80.5
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 5.8e-264 914.1 599 77.3
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 5.8e-264 914.1 588 79.4
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 5.8e-264 914.1 577 81.1
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 9.8e-264 913.3 606 78.1
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 1.7e-263 912.5 578 80.3
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 4.9e-263 911.0 579 80.3
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 1.4e-262 909.4 581 79.2
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.4e-262 909.4 577 80.8
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 2.4e-262 908.7 578 80.1
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 2.4e-262 908.7 577 79.5
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 2.7e-261 905.2 571 80.6
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 4.6e-261 904.4 571 80.6
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.0e-260 901.7 571 80.6
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 6.6e-260 900.6 575 80.2
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 8.1e-258 893.6 602 77.1
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 8.1e-258 893.6 579 79.1
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 2.3e-257 892.1 606 75.9
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 8.9e-257 890.2 579 78.8
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 1.2e-256 889.8 552 81.3
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 5.8e-256 887.5 593 77.2
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 9.9e-256 886.7 574 79.1
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 1.3e-255 886.3 579 78.8
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 1.7e-255 885.9 574 79.3
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 2.2e-255 885.6 576 78.3
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 2.9e-255 885.2 602 76.1
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 4.9e-255 884.4 574 78.9
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 1.1e-251 873.2 574 78.6
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 1.5e-251 872.8 577 77.6
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 3.3e-251 871.7 597 76.5
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 7.3e-251 870.5 573 77.0
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 2.1e-250 869.0 615 74.0
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 5.2e-249 864.4 615 73.5
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 1.3e-247 859.8 572 78.0
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 1.3e-247 859.8 592 75.7
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 2.9e-247 858.6 524 81.7
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 1.2e-245 853.2 573 76.6
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.6e-245 852.8 592 72.8
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 6.0e-245 850.9 575 75.5
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 3.0e-244 848.6 603 72.1
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 6.6e-244 847.4 546 78.0
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 3.3e-243 845.1 577 75.6
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 4.7e-242 841.3 608 73.0
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 4.7e-242 841.3 576 75.3
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 5.3e-241 837.8 582 73.2
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 9.9e-240 833.6 610 70.8
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.9e-238 829.3 579 74.3
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 2.4e-238 828.9 572 75.0
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 3.2e-238 828.6 510 81.8
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 7.8e-237 823.9 580 74.8
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 1.7e-236 822.8 642 68.7
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.7e-236 822.8 578 73.7
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 8.7e-236 820.5 595 72.3
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 9.6e-235 817.0 596 72.1
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 9.6e-235 817.0 583 72.2
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 1.6e-234 816.2 586 72.9
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 3.6e-234 815.1 583 71.9
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 4.8e-234 814.7 600 71.0
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 3.1e-233 812.0 583 71.9
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 5.3e-233 811.2 584 72.9
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 9.0e-233 810.4 586 73.2
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 1.5e-232 809.7 596 71.6
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 2.0e-232 809.3 572 73.3
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 1.7e-231 806.2 583 71.2
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 1.7e-231 806.2 583 71.2
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 2.2e-231 805.8 593 72.2
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 2.2e-231 805.8 590 72.4
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 1.2e-229 800.0 582 72.3
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.6e-229 799.7 574 73.3
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 4.6e-229 798.1 547 74.8
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 4.6e-229 798.1 547 74.8
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 4.3e-227 791.6 592 71.5
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 3.1e-225 785.4 586 71.5
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 3.1e-225 785.4 586 71.5
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 2.6e-224 782.3 567 72.8
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 5.8e-224 781.2 596 71.0
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 9.9e-224 780.4 580 72.6
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 1.7e-223 779.6 515 78.1
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 3.0e-220 768.8 596 67.8
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 2.5e-219 765.8 576 71.2
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.4e-214 750.0 587 66.6
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 3.2e-214 748.8 468 81.0
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 4.2e-214 748.4 528 72.7
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 2.1e-213 746.1 589 67.2
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 1.1e-211 740.3 599 67.9
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 1.5e-211 740.0 546 71.2
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 2.5e-211 739.2 532 70.5
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 1.6e-210 736.5 421 87.4
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 1.4e-206 723.4 599 63.9
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 3.2e-206 722.2 417 88.2
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 4.2e-206 721.8 524 69.7
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 9.4e-206 720.7 606 64.2
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.8e-204 716.5 413 85.0
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 3.3e-203 712.2 596 63.6
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 7.9e-197 691.0 617 62.4
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 8.8e-196 687.6 528 67.8
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.1e-195 687.2 408 83.6
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 2.6e-195 686.0 525 68.4
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.5e-192 676.8 562 63.5
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.9e-192 674.9 528 66.3
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 3.6e-189 665.6 495 68.5
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 2.0e-184 649.8 520 66.3
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.2e-183 646.4 528 64.8
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.4e-180 637.1 539 62.3
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 2.5e-174 616.3 450 73.3
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 8.0e-165 584.7 577 53.9
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 1.3e-162 577.4 384 76.8
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 8.9e-156 554.7 532 58.3
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 3.5e-152 542.7 480 58.8
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 8.3e-138 495.0 310 81.3
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.1e-134 484.6 466 57.5
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.5e-131 474.2 317 77.0
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 1.3e-103 381.3 239 78.2
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 3.1e-76 290.4 157 90.4
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 2.5e-65 254.2 145 89.0
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 2.9e-50 204.1 199 56.8
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 3.3e-49 200.7 199 55.3
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 1.8e-47 194.9 165 61.2
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 1.2e-46 192.2 165 60.6
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 2.8e-40 171.0 98 86.7
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 5.2e-39 166.8 123 68.3
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 8.6e-26 122.9 94 66.0
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 5.2e-23 113.6 94 61.7
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 1.2e-22 112.5 141 51.1
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.4e-20 104.8 313 28.1
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.3e-18 98.2 284 29.9
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 1.1e-17 95.9 60 80.0
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.8e-16 91.3 188 31.9
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 4.7e-16 90.5 70 74.3
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 6.8e-15 86.7 186 33.9
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 1.2e-14 85.9 124 36.3
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 3.4e-14 84.3 87 51.7
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 2.2e-13 81.6 101 49.5
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 4.3e-09 67.4 66 57.6
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 6.2e-08 63.5 65 46.2
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.0e-06 58.5 70 51.4


User provided reference genes

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