Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008784g0050 Nicotiana tabacum HOM05D005557 ORTHO05D006748 1.7e-163 579.3 311 100.0
Nitab4.5_0000343g0390 Nicotiana tabacum HOM05D005557 ORTHO05D006748 3.3e-146 521.9 311 87.5
Sopen07g021740 Solanum pennellii HOM05D005557 ORTHO05D006748 8.4e-134 480.7 312 81.7
PGSC0003DMG400016040 Solanum tuberosum HOM05D005557 ORTHO05D006748 5.4e-133 478.0 312 82.4
Solyc07g042150.3 Solanum lycopersicum HOM05D005557 ORTHO05D006748 9.3e-133 477.2 312 81.4
CAN.G32.9 Capsicum annuum HOM05D005557 ORTHO05D006748 1.6e-121 439.9 311 77.2
Peaxi162Scf00880g00018 Petunia axillaris HOM05D005557 ORTHO05D006748 4.9e-118 428.3 309 76.7
CiPaw.03G203700 Carya illinoinensis HOM05D005557 ORTHO05D006748 2.2e-102 376.3 309 67.0
Cc06_g12460 Coffea canephora HOM05D005557 ORTHO05D006748 7.2e-101 371.3 310 64.2
Actinidia30238 Actinidia chinensis HOM05D005557 ORTHO05D006748 1.4e-99 367.1 318 62.3
GSVIVG01015048001 Vitis vinifera HOM05D005557 ORTHO05D006748 3.9e-99 365.5 218 81.2
FAN10G4084 Fragaria x ananassa HOM05D005557 ORTHO05D006748 5.1e-99 365.2 314 62.7
Lj7A689T78 Lonicera japonica HOM05D005557 ORTHO05D006748 5.1e-99 365.2 314 64.0
FAN01G0749 Fragaria x ananassa HOM05D005557 ORTHO05D006748 6.7e-99 364.8 315 62.9
CSS0017494 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 8.8e-99 364.4 315 63.2
AUR62028302 Chenopodium quinoa HOM05D005557 ORTHO05D006748 1.1e-98 364.0 313 66.5
FvH4_7g05500 Fragaria vesca HOM05D005557 ORTHO05D006748 1.5e-98 363.6 315 62.5
FAN03G2003 Fragaria x ananassa HOM05D005557 ORTHO05D006748 2.0e-98 363.2 315 62.5
Dinv42413 Davidia involucrata HOM05D005557 ORTHO05D006748 3.3e-98 362.5 311 63.0
TWI32G1325 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 9.7e-98 360.9 312 62.2
DCAR_024765 Daucus carota HOM05D005557 ORTHO05D006748 1.3e-97 360.5 223 77.6
QL11p001232 Quercus lobata HOM05D005557 ORTHO05D006748 1.3e-97 360.5 317 62.5
RcHm_v2.0_Chr1g0332351 Rosa chinensis HOM05D005557 ORTHO05D006748 1.7e-97 360.1 310 63.2
Dinv25539 Davidia involucrata HOM05D005557 ORTHO05D006748 2.8e-97 359.4 310 63.2
SalBow6G3747 Salvia bowleyana HOM05D005557 ORTHO05D006748 2.8e-97 359.4 307 62.5
TWI63G1120 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 6.3e-97 358.2 316 64.2
Prupe.2G075400 Prunus persica HOM05D005557 ORTHO05D006748 8.2e-97 357.8 312 64.7
Ciclev10009013m.g Citrus clementina HOM05D005557 ORTHO05D006748 1.1e-96 357.5 314 62.7
Potri.006G139800 Populus trichocarpa HOM05D005557 ORTHO05D006748 1.4e-96 357.1 321 61.4
Manes.03G042000 Manihot esculenta HOM05D005557 ORTHO05D006748 1.8e-96 356.7 327 61.2
CANSAT56G2230 Cannabis sativa HOM05D005557 ORTHO05D006748 4.1e-96 355.5 220 78.6
Phvul.003G129500 Phaseolus vulgaris HOM05D005557 ORTHO05D006748 4.1e-96 355.5 312 65.7
Thecc.08G180200 Theobroma cacao HOM05D005557 ORTHO05D006748 5.3e-96 355.1 311 62.1
Atru.chr7.1734 Acer truncatum HOM05D005557 ORTHO05D006748 7.0e-96 354.8 316 62.7
MD02G1257100 Malus domestica HOM05D005557 ORTHO05D006748 1.2e-95 354.0 310 65.2
Hma1.2p1_0169F.1_g074410 Hydrangea macrophylla HOM05D005557 ORTHO05D006748 2.6e-95 352.8 220 76.8
SGA_v2.0_scaffold31G12665 Striga asiatica HOM05D005557 ORTHO05D006748 2.6e-95 352.8 311 61.1
Lj4g0021187 Lotus japonicus HOM05D005557 ORTHO05D006748 5.9e-95 351.7 317 64.7
MSTRG.10500 Avicennia marina HOM05D005557 ORTHO05D006748 7.7e-95 351.3 309 61.5
Gohir.A06G078200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 2.2e-94 349.7 281 66.5
Lalb_Chr13g0299361 Lupinus albus HOM05D005557 ORTHO05D006748 2.9e-94 349.4 316 61.1
PGR142G2674 Punica granatum HOM05D005557 ORTHO05D006748 6.5e-94 348.2 279 65.9
Cfa002966 Carpinus fangiana HOM05D000173 ORTHO05D006748 8.5e-94 347.8 310 63.2
TAR626G1135 Trochodendron aralioides HOM05D005557 ORTHO05D006748 1.5e-93 347.1 318 59.1
Glyma.17G048000 Glycine max HOM05D005557 ORTHO05D006748 2.5e-93 346.3 220 75.5
MD07G1063400 Malus domestica HOM05D005557 ORTHO05D006748 2.5e-93 346.3 312 62.8
Sabra06G0109200 Salix brachista HOM05D005557 ORTHO05D006748 9.4e-93 344.4 315 59.7
VMungo1215G1068 Vigna mungo HOM05D005557 ORTHO05D006748 1.2e-92 344.0 316 59.8
ClCG03G014930 Citrullus lanatus HOM05D005557 ORTHO05D006748 1.6e-92 343.6 320 59.4
Glyma.13G111700 Glycine max HOM05D005557 ORTHO05D006748 2.1e-92 343.2 317 63.4
THA.LOC104815688 Tarenaya hassleriana HOM05D005557 ORTHO05D006748 2.1e-92 343.2 313 59.1
Migut.J00918 Erythranthe guttata HOM05D005557 ORTHO05D006748 3.6e-92 342.4 311 59.5
Gorai.010G090300 Gossypium raimondii HOM05D005557 ORTHO05D006748 3.6e-92 342.4 289 65.4
arahy.Tifrunner.gnm1.ann1.568RE3 Arachis hypogaea HOM05D005557 ORTHO05D006748 4.7e-92 342.0 215 77.2
Lalb_Chr07g0181281 Lupinus albus HOM05D005557 ORTHO05D006748 8.0e-92 341.3 312 61.9
Aa31LG7G3880 Aethionema arabicum HOM05D005557 ORTHO05D006748 1.0e-91 340.9 307 61.2
EL10Ac8g19008 Beta vulgaris HOM05D005557 ORTHO05D006748 1.4e-91 340.5 236 73.3
Sed0003389 Sechium edule HOM05D005557 ORTHO05D006748 1.8e-91 340.1 321 61.7
Duzib168G0027 Durio zibethinus HOM05D005557 ORTHO05D006748 2.3e-91 339.7 221 75.6
FAN10G0153 Fragaria x ananassa HOM05D005557 ORTHO05D006748 2.3e-91 339.7 314 60.2
vmacro17121 Vaccinium macrocarpon HOM05D000173 ORTHO05D006748 3.0e-91 339.3 342 57.9
Thhalv10008278m.g Eutrema salsugineum HOM05D005557 ORTHO05D006748 3.9e-91 339.0 307 59.3
arahy.Tifrunner.gnm1.ann1.C56SYK Arachis hypogaea HOM05D005557 ORTHO05D006748 5.2e-91 338.6 215 76.3
Cpa.g.sc28.12 Carica papaya HOM05D005557 ORTHO05D006748 6.7e-91 338.2 315 59.7
Sp1g17050 Schrenkiella parvula HOM05D005557 ORTHO05D006748 6.7e-91 338.2 313 59.7
Medtr4g125000 Medicago truncatula HOM05D005557 ORTHO05D006748 5.7e-90 335.1 321 59.2
COL.COLO4_18069 Corchorus olitorius HOM05D005557 ORTHO05D006748 7.4e-90 334.7 201 80.6
AT1G19140 Arabidopsis thaliana HOM05D005557 ORTHO05D006748 1.7e-89 333.6 310 59.7
CSS0008332 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 2.2e-89 333.2 315 60.0
BcaB07g31927 Brassica carinata HOM05D005557 ORTHO05D006748 2.8e-89 332.8 309 58.6
Sc18g0002770 Simmondsia chinensis HOM05D005557 ORTHO05D006748 2.8e-89 332.8 291 62.2
CARHR019740 Cardamine hirsuta HOM05D005557 ORTHO05D006748 4.8e-89 332.0 310 59.0
BcaC05g25811 Brassica carinata HOM05D005557 ORTHO05D006748 8.2e-89 331.3 215 74.0
PSO386G0114 Papaver somniferum HOM05D005557 ORTHO05D006748 8.2e-89 331.3 217 73.3
SGA_v2.0_scaffold296G47553 Striga asiatica HOM05D005557 ORTHO05D006748 8.2e-89 331.3 326 55.2
CsaV3_1G041220 Cucumis sativus L. HOM05D005557 ORTHO05D006748 2.4e-88 329.7 322 58.7
Aqoxy3G00735 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 3.1e-88 329.3 316 55.1
BcaC07g38981 Brassica carinata HOM05D005557 ORTHO05D006748 4.1e-88 328.9 217 72.4
C05p17510 Brassica napus HOM05D005557 ORTHO05D006748 4.1e-88 328.9 219 73.5
BolC5t30454H Brassica oleracea HOM05D005557 ORTHO05D006748 4.1e-88 328.9 308 59.4
AL1G31720 Arabidopsis lyrata HOM05D005557 ORTHO05D006748 9.1e-88 327.8 310 57.7
Lsat_1_v5_gn_5_139800 Lactuca sativa HOM05D005557 ORTHO05D006748 9.1e-88 327.8 219 73.1
Eucgr.C00788 Eucalyptus grandis HOM05D005557 ORTHO05D006748 1.6e-87 327.0 219 72.1
A08p29990 Brassica napus HOM05D005557 ORTHO05D006748 2.0e-87 326.6 218 71.6
BcaB03g12934 Brassica carinata HOM05D005557 ORTHO05D006748 2.6e-87 326.2 217 71.9
MELO3C015535.2 Cucumis melo HOM05D005557 ORTHO05D006748 3.5e-87 325.9 243 66.7
Duzib187G0437 Durio zibethinus HOM05D005557 ORTHO05D006748 4.5e-87 325.5 311 58.8
A06p15270 Brassica napus HOM05D005557 ORTHO05D006748 5.9e-87 325.1 310 58.1
BraA06t24641Z Brassica rapa HOM05D005557 ORTHO05D006748 5.9e-87 325.1 310 58.1
Carub.0001s1877 Capsella rubella HOM05D005557 ORTHO05D006748 7.7e-87 324.7 311 60.1
BraA08t34934Z Brassica rapa HOM05D005557 ORTHO05D006748 1.0e-86 324.3 312 57.1
BolC8t49542H Brassica oleracea HOM05D005557 ORTHO05D006748 2.2e-86 323.2 212 74.1
C08p19230 Brassica napus HOM05D005557 ORTHO05D006748 3.8e-86 322.4 212 74.1
Actinidia39641 Actinidia chinensis HOM05D005557 ORTHO05D006748 1.1e-85 320.9 305 58.7
Ca_09310_v3 Cicer arietinum L. HOM05D005557 ORTHO05D006748 2.5e-85 319.7 312 56.4
Hund26090 Selenicereus undatus HOM05D005557 ORTHO05D006748 3.2e-85 319.3 202 76.7
Os03g0405100 Oryza sativa ssp. japonica HOM05D005557 ORTHO05D006748 7.2e-85 318.2 217 71.4
HPP92_013279 Vanilla planifolia HOM05D005557 ORTHO05D006748 1.6e-84 317.0 222 68.5
Aqoxy7G00284 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 3.6e-84 315.8 316 54.7
ECA234G3626 Erigeron canadensis HOM05D005557 ORTHO05D006748 4.7e-84 315.5 211 71.1
Gohir.D06G077200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 1.0e-83 314.3 255 66.3
Rhsim05G0005000 Rhododendron simsii HOM05D000173 ORTHO05D006748 5.2e-83 312.0 298 59.4
CANSAT56G3371 Cannabis sativa HOM05D005557 ORTHO05D006748 1.2e-82 310.8 228 70.2
SEGI_32471 Sequoiadendron giganteum HOM05D005557 ORTHO05D006748 2.6e-82 309.7 216 67.6
Zm00001eb019520 Zea mays HOM05D005557 ORTHO05D006748 4.4e-82 308.9 210 71.9
CDE05G0257 Ceratophyllum demersum HOM05D005557 ORTHO05D006748 5.7e-82 308.5 222 66.7
HanXRQChr12g0354431 Helianthus annuus HOM05D005557 ORTHO05D006748 1.4e-80 303.9 215 68.8
TPR.G12564 Trifolium pratense HOM05D005557 ORTHO05D006748 1.3e-78 297.4 294 60.5
BcaB03g12932 Brassica carinata HOM05D005557 ORTHO05D006748 2.7e-76 289.7 221 66.1
unitig_85.g27246 Utricularia gibba HOM05D005557 ORTHO05D006748 5.7e-74 282.0 219 61.6
Pp3c26_10620 Physcomitrium patens HOM05D005557 ORTHO05D006748 2.3e-70 270.0 209 59.3
TAR624G0952 Trochodendron aralioides HOM05D005557 ORTHO05D006748 1.6e-68 263.8 276 54.7
Psat7g057840 Pisum sativum HOM05D005557 ORTHO05D006748 1.5e-66 257.3 263 59.7
Mapoly0016s0081 Marchantia polymorpha HOM05D005557 ORTHO05D006748 1.3e-65 254.2 209 58.4
Thecc.09G074000 Theobroma cacao HOM05D005557 ORTHO05D006748 4.1e-64 249.2 243 57.2
SMO364G0522 Selaginella moellendorffii HOM05D005557 ORTHO05D006748 5.4e-64 248.8 232 53.0
MBI13_g00696_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 5.0e-62 242.3 200 62.0
ATR1100G017 Amborella trichopoda HOM05D005557 ORTHO05D006748 3.3e-61 239.6 171 69.0
Haze_26037 Corylus avellana HOM05D000173 ORTHO05D000316 3.1e-59 233.0 191 63.9
AagrBONN_evm.TU.Sc2ySwM_228.5739 Anthoceros agrestis HOM05D005557 ORTHO05D006748 3.9e-46 189.5 167 55.1
AUR62025296 Chenopodium quinoa HOM05D005557 ORTHO05D006748 6.6e-46 188.7 109 82.6
PSO724G0807 Papaver somniferum HOM05D005557 ORTHO05D006748 2.2e-41 173.7 155 58.1
SHI52085 Sapria himalayana HOM05D005557 ORTHO05D006748 1.3e-38 164.5 144 56.9
CBR_g19881 Chara braunii HOM05D005557 ORTHO05D006748 1.5e-37 161.0 168 47.0
arahy.Tifrunner.gnm1.ann1.CV9S7K Arachis hypogaea HOM05D005557 ORTHO05D006748 2.6e-34 150.2 83 81.9
arahy.Tifrunner.gnm1.ann1.56M64E Arachis hypogaea HOM05D005557 ORTHO05D006748 3.4e-34 149.8 83 83.1
PRCOL_00004586 Prasinoderma coloniale HOM05D005557 ORTHO05D006748 7.8e-31 138.7 207 37.2
arahy.Tifrunner.gnm1.ann1.D619LQ Arachis hypogaea HOM05D005557 ORTHO05D006748 1.0e-30 138.3 112 59.8
AagrBONN_evm.TU.Sc2ySwM_228.4614 Anthoceros agrestis HOM05D005557 ORTHO05D006748 9.6e-29 131.7 125 53.6
arahy.Tifrunner.gnm1.ann1.WCQ4SR Arachis hypogaea HOM05D005557 ORTHO05D006748 2.1e-28 130.6 113 61.1
arahy.Tifrunner.gnm1.ann1.67TMSF Arachis hypogaea HOM05D005557 ORTHO05D006748 4.0e-27 126.3 68 83.8
Cre06.g269550 Chlamydomonas reinhardtii HOM05D005557 ORTHO05D006748 1.4e-24 117.9 150 38.7
MCO02G393 Micromonas commoda HOM05D005557 ORTHO05D006748 1.2e-23 114.8 199 32.2
Nn1g06537 Nelumbo nucifera HOM05D005557 ORTHO05D006748 4.5e-18 96.3 150 43.3
Migut.J00920 Erythranthe guttata HOM05D005557 ORTHO05D006748 1.1e-16 91.7 149 41.6
arahy.Tifrunner.gnm1.ann1.L7J4LP Arachis hypogaea HOM05D005557 ORTHO05D006748 5.5e-16 89.4 57 70.2
arahy.Tifrunner.gnm1.ann1.HVCV5S Arachis hypogaea HOM05D004618 ORTHO05D005318 9.6e-13 78.6 83 53.0
Migut.J00958 Erythranthe guttata HOM05D005557 ORTHO05D006748 3.8e-09 66.6 147 35.4
Lj2g0003057 Lotus japonicus HOM05D005557 ORTHO05D018814 4.9e-09 66.2 67 55.2
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 6.5e-09 65.9 37 83.8
MBI13_g00695_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 1.1e-08 65.1 87 43.7
BraA07t29264Z Brassica rapa HOM05D005557 ORTHO05D027294 9.3e-08 62.0 35 82.9
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 1.2e-07 61.6 31 83.9
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 8.7e-06 55.5 28 82.1


User provided reference genes

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