Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.5e-179 632.9 341 100.0
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 2.7e-165 585.5 342 92.4
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 2.4e-118 429.5 347 74.6
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 7.9e-109 397.9 339 72.0
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 1.3e-108 397.1 257 82.9
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 3.0e-108 396.0 340 73.2
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 7.4e-99 364.8 344 64.2
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 6.5e-95 351.7 358 61.5
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 1.6e-93 347.1 348 61.8
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 2.4e-89 333.2 305 65.9
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 7.6e-88 328.2 344 58.4
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 2.9e-87 326.2 341 58.4
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 1.9e-83 313.5 307 60.6
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 3.3e-83 312.8 233 74.7
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 1.7e-79 300.4 258 68.2
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.7e-79 300.4 272 65.1
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 1.1e-78 297.7 309 60.2
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 5.5e-78 295.4 309 58.6
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 6.1e-77 292.0 340 54.4
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 7.9e-77 291.6 298 59.4
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 1.0e-76 291.2 229 70.3
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 3.9e-76 289.3 250 67.2
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 6.7e-76 288.5 311 57.2
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 8.8e-76 288.1 331 55.9
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 2.6e-75 286.6 249 65.5
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 2.6e-75 286.6 254 65.4
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 4.4e-75 285.8 254 66.5
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 7.4e-75 285.0 310 57.1
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 9.7e-75 284.6 321 57.3
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 9.7e-75 284.6 295 59.7
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 9.7e-75 284.6 252 67.5
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 1.3e-74 284.3 245 68.2
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 1.3e-74 284.3 337 54.9
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 1.3e-74 284.3 337 54.9
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 4.8e-74 282.3 257 64.2
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.1e-73 281.2 311 56.9
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 1.8e-73 280.4 257 63.8
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 1.8e-73 280.4 314 55.7
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 9.1e-73 278.1 266 62.4
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 3.4e-72 276.2 314 56.7
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 1.3e-71 274.2 309 54.0
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 2.2e-71 273.5 311 55.9
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 2.9e-71 273.1 274 59.1
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 3.8e-71 272.7 277 62.5
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 8.5e-71 271.6 296 56.4
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 1.1e-70 271.2 306 55.9
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 1.9e-70 270.4 315 54.9
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 2.5e-70 270.0 329 55.6
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 2.5e-70 270.0 265 60.8
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 7.2e-70 268.5 312 58.3
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 1.6e-69 267.3 256 60.9
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 2.1e-69 266.9 248 64.5
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 2.1e-69 266.9 310 54.2
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 2.7e-69 266.5 311 53.4
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 4.7e-69 265.8 262 61.1
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 6.1e-69 265.4 337 52.5
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 1.0e-68 264.6 311 55.6
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 6.7e-68 261.9 310 52.6
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 1.1e-67 261.2 232 66.4
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 1.5e-67 260.8 302 53.3
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 2.6e-67 260.0 368 51.4
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 3.3e-67 259.6 231 65.8
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 3.3e-67 259.6 231 65.8
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 5.7e-67 258.8 231 65.8
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 1.3e-66 257.7 293 55.3
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 1.7e-66 257.3 315 51.7
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 2.2e-66 256.9 232 65.1
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 2.8e-66 256.5 266 60.5
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 4.8e-66 255.8 306 50.7
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 8.2e-66 255.0 304 54.3
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 2.4e-65 253.4 265 57.7
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 4.1e-65 252.7 312 53.8
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.6e-64 250.8 311 51.4
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 5.9e-64 248.8 317 54.3
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 1.0e-63 248.1 304 52.0
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 1.0e-63 248.1 305 53.4
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 1.7e-63 247.3 327 52.9
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 1.7e-63 247.3 308 50.3
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 2.9e-63 246.5 267 56.6
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 3.8e-63 246.1 314 51.3
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 5.0e-63 245.7 304 51.0
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 6.5e-63 245.4 278 55.8
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 6.5e-63 245.4 266 57.9
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 1.1e-62 244.6 313 51.1
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 2.5e-62 243.4 311 49.8
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 3.2e-62 243.0 307 52.1
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 3.2e-62 243.0 309 51.8
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 4.2e-62 242.7 218 65.6
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 5.5e-62 242.3 274 56.6
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 7.2e-62 241.9 305 50.8
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 9.4e-62 241.5 309 50.5
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 2.1e-61 240.4 332 51.8
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 3.6e-61 239.6 350 49.4
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 4.7e-61 239.2 306 52.6
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 4.0e-60 236.1 306 49.3
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 1.2e-59 234.6 231 61.5
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 1.5e-59 234.2 331 49.5
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 2.2e-58 230.3 239 60.7
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 2.2e-58 230.3 296 49.7
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 4.1e-57 226.1 256 56.6
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 5.3e-57 225.7 271 54.6
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 1.2e-56 224.6 238 58.0
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 1.6e-56 224.2 174 67.8
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 1.3e-55 221.1 297 48.8
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 1.7e-55 220.7 241 58.1
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 3.8e-55 219.5 231 58.4
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 5.0e-55 219.2 345 44.9
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 5.0e-55 219.2 236 58.1
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 5.0e-55 219.2 329 46.5
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 2.5e-54 216.9 239 56.5
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 4.2e-54 216.1 234 57.7
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 5.5e-54 215.7 322 49.4
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 9.4e-54 214.9 240 54.6
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 1.6e-53 214.2 239 56.9
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 2.7e-53 213.4 239 56.9
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 2.7e-53 213.4 259 54.4
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 4.7e-53 212.6 253 56.9
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 1.4e-52 211.1 267 53.6
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 1.4e-52 211.1 259 54.1
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 1.4e-52 211.1 267 53.6
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 2.3e-52 210.3 247 51.0
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 3.0e-52 209.9 231 58.0
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 3.0e-52 209.9 322 46.0
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 3.0e-52 209.9 324 44.8
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 4.0e-52 209.5 247 55.9
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 5.2e-52 209.1 260 53.5
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 2.6e-51 206.8 257 54.9
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 3.4e-51 206.5 248 54.8
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 8.3e-50 201.8 258 53.1
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 2.4e-49 200.3 229 55.5
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 5.9e-48 195.7 230 55.2
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 7.7e-48 195.3 261 52.5
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 7.7e-48 195.3 261 52.5
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 1.7e-47 194.1 227 52.4
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 2.2e-47 193.7 228 57.0
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 2.9e-47 193.4 257 50.2
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 6.5e-47 192.2 297 46.5
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 8.0e-45 185.3 250 50.8
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 1.3e-42 177.9 257 47.9
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 1.7e-42 177.6 285 47.0
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 1.6e-40 171.0 175 54.3
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 4.5e-40 169.5 215 49.3
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 4.5e-40 169.5 263 47.9
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 3.8e-39 166.4 289 43.6
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 6.6e-39 165.6 111 75.7
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 6.1e-37 159.1 319 39.5
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 4.0e-36 156.4 327 39.1
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 5.7e-35 152.5 242 42.6
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 2.9e-34 150.2 255 40.8
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 8.3e-34 148.7 276 39.1
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 8.3e-34 148.7 276 39.1
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 1.8e-33 147.5 203 45.3
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 5.4e-33 146.0 206 44.2
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 1.0e-31 141.7 113 69.9
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 8.0e-29 132.1 310 36.1
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 4.0e-28 129.8 290 37.2
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 7.5e-27 125.6 173 48.0
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 1.9e-25 120.9 267 38.2
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 1.7e-23 114.4 155 47.7
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 1.8e-20 104.4 63 92.1
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 2.6e-19 100.5 174 43.7
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 1.4e-17 94.7 91 54.9


User provided reference genes

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