Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008759g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 0.0e+00 1191.8 628 100.0
Nitab4.5_0000032g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 0.0e+00 1159.8 628 97.3
Sopen04g027280 Solanum pennellii HOM05D004716 ORTHO05D005646 1.5e-302 1042.3 640 87.8
Peaxi162Scf00765g00315 Petunia axillaris HOM05D004716 ORTHO05D005646 5.7e-299 1030.4 629 87.9
CAN.G268.7 Capsicum annuum HOM05D004716 ORTHO05D005646 1.3e-290 1002.7 651 84.9
Solyc04g071320.4 Solanum lycopersicum HOM05D004716 ORTHO05D005646 1.7e-287 992.3 640 83.9
Dinv41092 Davidia involucrata HOM05D004716 ORTHO05D005646 7.4e-254 880.6 652 71.2
Oeu046025.1 Olea europaea HOM05D004716 ORTHO05D005646 1.1e-244 850.1 633 70.3
Cc10_g14730 Coffea canephora HOM05D004716 ORTHO05D005646 1.4e-244 849.7 651 69.3
Actinidia17798 Actinidia chinensis HOM05D004716 ORTHO05D005646 5.8e-243 844.3 633 70.8
Dinv25852 Davidia involucrata HOM05D004716 ORTHO05D005646 7.6e-243 844.0 652 68.4
Hma1.2p1_0105F.1_g050810 Hydrangea macrophylla HOM05D004716 ORTHO05D005646 4.9e-242 841.3 653 70.4
GSVIVG01034512001 Vitis vinifera HOM05D004716 ORTHO05D005646 6.7e-239 830.9 642 67.1
Haze_17746 Corylus avellana HOM05D004716 ORTHO05D005646 3.3e-238 828.6 633 68.1
CANSAT25G0539 Cannabis sativa HOM05D004716 ORTHO05D005646 1.4e-236 823.2 631 68.0
Cfa018329 Carpinus fangiana HOM05D004716 ORTHO05D005646 6.9e-236 820.8 633 67.3
MD05G1023700 Malus domestica HOM05D004716 ORTHO05D005646 1.5e-235 819.7 638 67.1
ClCG09G009620 Citrullus lanatus HOM05D004716 ORTHO05D005646 3.4e-235 818.5 634 67.5
Prupe.8G028200 Prunus persica HOM05D004716 ORTHO05D005646 4.5e-235 818.1 639 66.8
CiPaw.15G016900 Carya illinoinensis HOM05D004716 ORTHO05D005646 2.9e-234 815.5 633 66.2
RcHm_v2.0_Chr6g0275661 Rosa chinensis HOM05D004716 ORTHO05D005646 3.8e-234 815.1 628 68.3
Migut.N03224 Erythranthe guttata HOM05D004716 ORTHO05D005646 6.5e-234 814.3 651 67.0
Manes.18G091200 Manihot esculenta HOM05D004716 ORTHO05D005646 1.1e-233 813.5 631 66.7
arahy.Tifrunner.gnm1.ann1.LT68UB Arachis hypogaea HOM05D004716 ORTHO05D005646 1.9e-233 812.8 647 67.5
arahy.Tifrunner.gnm1.ann1.RZZD7S Arachis hypogaea HOM05D004716 ORTHO05D005646 1.9e-233 812.8 647 67.5
Rhsim06G0090400 Rhododendron simsii HOM05D004716 ORTHO05D005646 5.5e-233 811.2 630 67.6
FAN27G2333 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.8e-231 806.2 628 67.2
MSTRG.22371 Avicennia marina HOM05D004716 ORTHO05D005646 3.0e-231 805.4 655 68.5
TWI34G0952 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 6.7e-231 804.3 631 66.4
TAR381G1500 Trochodendron aralioides HOM05D004716 ORTHO05D005646 6.7e-231 804.3 647 65.1
Potri.002G069100 Populus trichocarpa HOM05D004716 ORTHO05D005646 1.1e-230 803.5 654 65.3
FvH4_2g13910 Fragaria vesca HOM05D004716 ORTHO05D005646 1.9e-230 802.7 630 67.5
Glyma.20G166300 Glycine max HOM05D004716 ORTHO05D005646 4.3e-230 801.6 636 68.4
Phvul.007G079400 Phaseolus vulgaris HOM05D004716 ORTHO05D005646 4.3e-230 801.6 634 68.6
FAN15G2444 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.3e-229 800.0 629 67.2
Potri.005G191300 Populus trichocarpa HOM05D004716 ORTHO05D005646 2.8e-229 798.9 633 66.5
Glyma.10G225500 Glycine max HOM05D004716 ORTHO05D005646 3.7e-229 798.5 636 68.1
HanXRQChr10g0279061 Helianthus annuus HOM05D004716 ORTHO05D005646 3.7e-229 798.5 650 65.5
FAN24G2048 Fragaria x ananassa HOM05D004716 ORTHO05D005646 6.3e-229 797.7 630 67.3
CiPaw.16G013500 Carya illinoinensis HOM05D004716 ORTHO05D005646 1.1e-228 797.0 630 65.7
MELO3C023718.2 Cucumis melo HOM05D004716 ORTHO05D005646 1.4e-228 796.6 633 66.7
FAN20G2258 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.4e-228 796.6 630 67.5
CsaV3_7G025180 Cucumis sativus L. HOM05D004716 ORTHO05D005646 1.2e-227 793.5 633 66.4
Sabra05G0146100 Salix brachista HOM05D004716 ORTHO05D005646 2.6e-227 792.3 633 66.2
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 7.7e-227 790.8 648 64.7
Duzib116G0661 Durio zibethinus HOM05D004716 ORTHO05D005646 2.9e-226 788.9 638 65.2
TWI60G0041 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 3.8e-226 788.5 629 65.2
MBI09_g32373_MAGBIO Magnolia biondii HOM05D004716 ORTHO05D005646 6.5e-226 787.7 626 66.6
MD10G1024300 Malus domestica HOM05D004716 ORTHO05D005646 8.5e-226 787.3 641 64.4
Aqoxy5G02106 Aquilegia oxysepala HOM05D004716 ORTHO05D005646 5.5e-225 784.6 632 66.5
Ca_19935_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 7.2e-225 784.3 637 66.1
SalBow7G0781 Salvia bowleyana HOM05D004716 ORTHO05D005646 9.4e-225 783.9 629 66.1
Atru.chr13.2155 Acer truncatum HOM05D004716 ORTHO05D005646 1.6e-224 783.1 643 68.0
DCAR_001131 Daucus carota HOM05D004716 ORTHO05D005646 2.1e-224 782.7 626 65.2
Sed0005850 Sechium edule HOM05D004716 ORTHO05D005646 1.0e-223 780.4 634 65.6
Duzib041G0148 Durio zibethinus HOM05D004716 ORTHO05D005646 5.1e-223 778.1 635 64.4
TAR625G0458 Trochodendron aralioides HOM05D004716 ORTHO05D005646 6.7e-223 777.7 642 63.7
Lsat_1_v5_gn_6_99641 Lactuca sativa HOM05D004716 ORTHO05D005646 1.1e-222 776.9 638 65.4
Lalb_Chr01g0009631 Lupinus albus HOM05D004716 ORTHO05D005646 3.3e-222 775.4 635 66.6
ECA246G4589 Erigeron canadensis HOM05D004716 ORTHO05D005646 7.4e-222 774.2 619 66.1
Thecc.08G149900 Theobroma cacao HOM05D004716 ORTHO05D005646 1.7e-221 773.1 634 64.0
AUR62013572 Chenopodium quinoa HOM05D004716 ORTHO05D005646 4.8e-221 771.5 649 64.7
Sed0016522 Sechium edule HOM05D004716 ORTHO05D005646 1.4e-220 770.0 632 64.6
Nn5g28715 Nelumbo nucifera HOM05D004716 ORTHO05D005646 1.8e-220 769.6 640 64.1
COL.COLO4_37837 Corchorus olitorius HOM05D004716 ORTHO05D005646 6.9e-220 767.7 634 63.6
SGA_v2.0_scaffold25G11175 Striga asiatica HOM05D004716 ORTHO05D005646 3.4e-219 765.4 654 65.7
Gorai.009G253500 Gossypium raimondii HOM05D004716 ORTHO05D005646 3.8e-218 761.9 634 62.9
Duzib093G0980 Durio zibethinus HOM05D004716 ORTHO05D005646 3.2e-217 758.8 634 63.1
Gohir.A05G242900 Gossypium hirsutum HOM05D004716 ORTHO05D005646 2.1e-216 756.1 633 62.1
EL10Ac1g01533 Beta vulgaris HOM05D004716 ORTHO05D005646 2.6e-214 749.2 652 62.3
Lj5g0004042 Lotus japonicus HOM05D004716 ORTHO05D005646 2.6e-214 749.2 636 65.3
Aa31LG6G9740 Aethionema arabicum HOM05D004716 ORTHO05D005646 3.3e-214 748.8 633 62.7
Gohir.A05G270100 Gossypium hirsutum HOM05D004716 ORTHO05D005646 5.7e-214 748.0 639 63.8
THA.LOC104809692 Tarenaya hassleriana HOM05D004716 ORTHO05D005646 5.7e-214 748.0 595 66.4
Ciclev10000573m.g Citrus clementina HOM05D004716 ORTHO05D005646 9.7e-214 747.3 640 66.2
AUR62026717 Chenopodium quinoa HOM05D004716 ORTHO05D005646 1.3e-213 746.9 639 64.6
Gorai.009G285100 Gossypium raimondii HOM05D004716 ORTHO05D005646 1.3e-213 746.9 639 63.7
Ah.05g167860 Amaranthus hybridus HOM05D004716 ORTHO05D005646 2.2e-213 746.1 635 65.5
Eucgr.F04241 Eucalyptus grandis HOM05D004716 ORTHO05D005646 2.8e-213 745.7 637 62.2
Carub.0001s3471 Capsella rubella HOM05D004716 ORTHO05D005646 8.2e-213 744.2 642 62.5
AL1G51810 Arabidopsis lyrata HOM05D004716 ORTHO05D005646 1.4e-212 743.4 638 61.9
PSO210G2251 Papaver somniferum HOM05D004716 ORTHO05D005646 3.1e-212 742.3 651 61.3
Sp1g32700 Schrenkiella parvula HOM05D004716 ORTHO05D005646 3.1e-212 742.3 635 61.9
unitig_62.g23528 Utricularia gibba HOM05D004716 ORTHO05D005646 1.2e-211 740.3 641 63.8
Thhalv10011324m.g Eutrema salsugineum HOM05D004716 ORTHO05D005646 7.7e-211 737.6 648 61.3
AT1G43690 Arabidopsis thaliana HOM05D004716 ORTHO05D005646 2.2e-210 736.1 634 62.0
Lj7A371T50 Lonicera japonica HOM05D004716 ORTHO05D005646 2.2e-210 736.1 513 72.7
QL02p024060 Quercus lobata HOM05D004716 ORTHO05D005646 6.5e-210 734.6 765 55.0
PGR044G2101 Punica granatum HOM05D004716 ORTHO05D005646 2.1e-208 729.6 631 60.9
TPR.G30003 Trifolium pratense HOM05D004716 ORTHO05D005646 2.3e-207 726.1 635 63.3
Sed0004003 Sechium edule HOM05D004716 ORTHO05D005646 8.8e-207 724.2 509 70.9
A10p07790 Brassica napus HOM05D004716 ORTHO05D005646 2.6e-206 722.6 628 60.8
BraSC36t46025Z Brassica rapa HOM05D004716 ORTHO05D005646 9.7e-206 720.7 628 60.7
Medtr1g098940 Medicago truncatula HOM05D004716 ORTHO05D005646 1.3e-205 720.3 636 63.5
BcaB07g33979 Brassica carinata HOM05D004716 ORTHO05D005646 8.2e-205 717.6 632 61.7
CARHR035580 Cardamine hirsuta HOM05D004716 ORTHO05D005646 4.1e-204 715.3 635 59.1
Gohir.D05G272200 Gossypium hirsutum HOM05D004716 ORTHO05D005646 9.1e-204 714.1 639 61.7
BcaC08g42816 Brassica carinata HOM05D004716 ORTHO05D005646 1.6e-203 713.4 630 60.3
C06p00280 Brassica napus HOM05D004716 ORTHO05D005646 1.6e-203 713.4 630 60.3
Lalb_Chr06g0161551 Lupinus albus HOM05D004716 ORTHO05D005646 2.0e-203 713.0 512 70.9
PSO238G0051 Papaver somniferum HOM05D004716 ORTHO05D005646 6.5e-202 708.0 651 58.8
TPR.G36694 Trifolium pratense HOM05D004716 ORTHO05D005646 1.1e-201 707.2 592 62.7
SalBow6G6163 Salvia bowleyana HOM05D004716 ORTHO05D005646 4.2e-201 705.3 681 58.7
Gohir.D05G244400 Gossypium hirsutum HOM05D004716 ORTHO05D005646 3.0e-199 699.1 631 59.3
Migut.C01013 Erythranthe guttata HOM05D004716 ORTHO05D005646 4.1e-196 688.7 635 59.2
Lj4C695G10 Lonicera japonica HOM05D004716 ORTHO05D005646 2.0e-195 686.4 633 60.3
CSS0049856 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 2.7e-195 686.0 455 74.9
CDE08G0143 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 4.5e-195 685.3 633 59.4
Nn1g06102 Nelumbo nucifera HOM05D004716 ORTHO05D005646 5.9e-195 684.9 486 71.0
Zm00001eb422340 Zea mays HOM05D004716 ORTHO05D005646 7.8e-187 657.9 637 57.0
Oeu011938.1 Olea europaea HOM05D004716 ORTHO05D005646 3.3e-185 652.5 635 58.9
SGA_v2.0_scaffold24G10374 Striga asiatica HOM05D004716 ORTHO05D005646 8.3e-181 637.9 653 56.4
Ca_25988_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 1.7e-173 613.6 397 76.3
HPP92_019355 Vanilla planifolia HOM05D004716 ORTHO05D005646 4.9e-173 612.1 550 60.5
SHI09390 Sapria himalayana HOM05D004716 ORTHO05D005646 2.1e-171 606.7 510 60.4
Cpa.g.sc21.190 Carica papaya HOM05D004716 ORTHO05D005646 6.2e-168 595.1 432 69.9
Sc02g0004170 Simmondsia chinensis HOM05D004716 ORTHO05D005646 5.8e-166 588.6 452 66.2
SMO331G0079 Selaginella moellendorffii HOM05D004716 ORTHO05D005646 2.2e-165 586.6 627 53.1
ATR0772G093 Amborella trichopoda HOM05D004716 ORTHO05D005646 6.4e-165 585.1 461 64.9
Mapoly0014s0164 Marchantia polymorpha HOM05D004716 ORTHO05D005646 3.0e-162 576.2 651 49.0
Oeu014493.1 Olea europaea HOM05D004716 ORTHO05D005646 7.3e-161 571.6 383 73.6
Pp3c6_18530 Physcomitrium patens HOM05D004716 ORTHO05D005646 6.2e-160 568.5 647 50.4
CDE06G2375 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 4.0e-159 565.8 632 53.0
Pp3c5_6660 Physcomitrium patens HOM05D004716 ORTHO05D005646 2.4e-156 556.6 649 48.7
AagrBONN_evm.TU.Sc2ySwM_344.4417 Anthoceros agrestis HOM05D004716 ORTHO05D005646 4.4e-150 535.8 674 46.6
Psat6g193200 Pisum sativum HOM05D004716 ORTHO05D005646 1.5e-145 520.8 318 81.1
Psat6g193040 Pisum sativum HOM05D004716 ORTHO05D005646 1.8e-138 497.3 303 80.9
vmacro21155 Vaccinium macrocarpon HOM05D004716 ORTHO05D005646 5.1e-138 495.7 311 77.2
Zm00001eb422260 Zea mays HOM05D004716 ORTHO05D005646 3.0e-130 469.9 312 73.1
CBR_g11170 Chara braunii HOM05D004716 ORTHO05D005646 1.4e-124 451.1 557 47.2
Os04g0421800 Oryza sativa ssp. japonica HOM05D004716 ORTHO05D005646 2.7e-123 446.8 298 71.1
HanXRQChr10g0277841 Helianthus annuus HOM05D004716 ORTHO05D005646 7.9e-115 418.7 303 73.6
Zm00001eb422280 Zea mays HOM05D004716 ORTHO05D005646 1.3e-101 374.8 255 69.4
Zm00001eb422320 Zea mays HOM05D004716 ORTHO05D005646 1.3e-101 374.8 255 69.4
Actinidia10653 Actinidia chinensis HOM05D004716 ORTHO05D005646 7.8e-70 269.2 230 64.8
PRCOL_00002924 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 7.1e-55 219.5 385 36.4
VMungo0464G1352 Vigna mungo HOM05D004716 ORTHO05D005646 1.0e-45 189.1 263 51.3
CAN.G309.90 Capsicum annuum HOM05D004716 ORTHO05D005646 2.1e-43 181.4 193 57.5
Cpa.g.sc21.191 Carica papaya HOM05D004716 ORTHO05D005646 5.4e-39 166.8 183 54.6
Actinidia13988 Actinidia chinensis HOM05D004716 ORTHO05D005646 9.3e-31 139.4 87 74.7
ATR0772G018 Amborella trichopoda HOM05D004716 ORTHO05D005646 2.1e-30 138.3 209 46.4
Actinidia10651 Actinidia chinensis HOM05D004716 ORTHO05D005646 4.6e-30 137.1 173 50.9
PRCOL_00004133 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 4.6e-30 137.1 340 33.2
PGSC0003DMG401024092 Solanum tuberosum HOM05D004716 ORTHO05D005646 5.1e-29 133.7 163 65.0
Cre06.g286600 Chlamydomonas reinhardtii HOM05D004716 ORTHO05D005646 9.6e-28 129.4 288 34.0
TAR636G3535 Trochodendron aralioides HOM05D004716 ORTHO05D005646 1.9e-20 105.1 92 64.1
Ca_25987_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 3.7e-19 100.9 152 45.4
Oeu014494.1 Olea europaea HOM05D004716 ORTHO05D005646 1.7e-16 92.0 159 44.7
CSS0021208 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 2.9e-16 91.3 156 42.9
SEGI_31186 Sequoiadendron giganteum HOM05D004716 ORTHO05D005646 2.9e-16 91.3 152 43.4
HanXRQChr10g0277851 Helianthus annuus HOM05D004716 ORTHO05D005646 4.2e-15 87.4 111 49.5
Psat6g193080 Pisum sativum HOM05D000257 ORTHO05D008537 2.5e-07 61.6 71 49.3
Ca_26438_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 4.2e-07 60.8 149 33.6
Ca_11944_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 6.1e-06 57.0 78 51.3


User provided reference genes

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