Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.3e-279 966.5 807 100.0
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.3e-197 694.1 707 84.7
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.5e-163 580.9 772 76.3
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 6.6e-90 336.3 707 51.1
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 5.1e-82 310.1 710 55.5
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 4.2e-68 263.8 328 64.3
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 3.9e-66 257.3 189 76.2
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 1.6e-59 235.3 756 39.4
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.4e-55 221.5 195 67.2
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 1.3e-53 215.7 272 53.7
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 1.3e-53 215.7 186 65.6
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 3.2e-52 211.1 156 73.7
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 3.6e-51 207.6 181 65.7
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 1.0e-50 206.1 298 54.0
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 3.9e-50 204.1 170 66.5
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 6.7e-50 203.4 255 49.0
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 2.6e-49 201.4 170 65.3
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 7.4e-49 199.9 340 47.4
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 4.8e-48 197.2 146 72.6
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 4.8e-48 197.2 189 60.3
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 6.3e-48 196.8 313 47.0
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 6.3e-48 196.8 181 62.4
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 1.8e-47 195.3 115 86.1
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 3.1e-47 194.5 173 66.5
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 4.1e-47 194.1 146 72.6
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 4.1e-47 194.1 250 56.0
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 4.1e-47 194.1 182 61.5
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 5.3e-47 193.7 183 62.3
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 5.3e-47 193.7 714 41.9
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 7.0e-47 193.4 210 59.5
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 9.1e-47 193.0 302 51.3
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 2.6e-46 191.4 169 66.9
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 3.5e-46 191.0 191 57.1
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 3.5e-46 191.0 181 63.5
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 3.5e-46 191.0 202 60.9
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 5.9e-46 190.3 322 48.4
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 7.7e-46 189.9 190 61.1
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 7.7e-46 189.9 190 61.1
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 7.7e-46 189.9 246 50.8
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 7.7e-46 189.9 276 45.3
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 7.7e-46 189.9 276 45.3
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 7.7e-46 189.9 140 70.0
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 1.3e-45 189.1 201 59.2
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 1.7e-45 188.7 185 58.4
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 2.2e-45 188.3 194 57.7
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 2.9e-45 188.0 190 60.5
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 2.9e-45 188.0 190 60.5
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 2.9e-45 188.0 190 60.5
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 3.8e-45 187.6 299 46.2
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 3.8e-45 187.6 233 50.6
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 5.0e-45 187.2 261 50.6
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 8.5e-45 186.4 314 44.6
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 8.5e-45 186.4 192 58.3
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 1.9e-44 185.3 194 55.2
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 4.2e-44 184.1 237 54.9
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 4.2e-44 184.1 168 62.5
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 7.2e-44 183.3 140 66.4
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 7.2e-44 183.3 140 66.4
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 7.2e-44 183.3 194 55.7
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 3.6e-43 181.0 281 49.1
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 4.7e-43 180.6 215 51.2
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 8.0e-43 179.9 330 43.0
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 1.0e-42 179.5 261 46.4
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 2.3e-42 178.3 215 50.7
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 6.7e-42 176.8 368 43.5
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.5e-41 175.6 151 66.2
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.5e-41 175.6 151 65.6
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 2.0e-41 175.3 199 53.8
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.0e-41 175.3 151 64.9
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 2.6e-41 174.9 305 44.3
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 2.6e-41 174.9 145 64.8
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 3.3e-41 174.5 188 54.8
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 3.3e-41 174.5 188 54.8
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 3.3e-41 174.5 146 64.4
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 3.3e-41 174.5 325 40.0
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 4.4e-41 174.1 143 67.8
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 5.7e-41 173.7 218 50.0
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 7.4e-41 173.3 189 53.4
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 1.3e-40 172.6 188 52.1
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 1.3e-40 172.6 343 44.6
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 2.2e-40 171.8 110 78.2
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 2.8e-40 171.4 347 42.9
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 2.8e-40 171.4 109 78.0
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 2.8e-40 171.4 114 74.6
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 3.7e-40 171.0 193 54.9
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 3.7e-40 171.0 201 53.7
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 6.3e-40 170.2 143 65.7
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 6.3e-40 170.2 129 69.0
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 8.2e-40 169.9 238 52.9
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 1.8e-39 168.7 724 33.0
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 2.4e-39 168.3 114 75.4
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 3.1e-39 167.9 330 41.5
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 3.1e-39 167.9 106 78.3
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 3.1e-39 167.9 106 78.3
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 4.1e-39 167.5 334 47.0
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 9.1e-39 166.4 113 75.2
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 1.2e-38 166.0 114 75.4
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.2e-38 166.0 151 63.6
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 4.5e-38 164.1 151 63.6
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 2.9e-37 161.4 108 78.7
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 8.5e-37 159.8 190 52.1
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 1.5e-36 159.1 285 49.8
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.5e-36 159.1 162 56.2
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 1.9e-36 158.7 191 50.3
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 1.9e-36 158.7 162 58.6
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 3.2e-36 157.9 190 50.5
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 7.2e-36 156.8 274 44.2
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 2.7e-35 154.8 336 37.2
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 6.1e-35 153.7 318 39.3
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 1.4e-34 152.5 179 48.0
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 9.7e-33 146.4 155 56.1
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 2.0e-30 138.7 93 74.2
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 2.0e-30 138.7 99 73.7
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.7e-30 138.3 149 56.4
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.7e-30 138.3 149 56.4
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 6.5e-29 133.7 91 71.4
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 1.9e-28 132.1 81 81.5
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 3.2e-28 131.3 210 42.9
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 7.2e-28 130.2 113 57.5
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 1.2e-27 129.4 140 54.3
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 1.2e-27 129.4 200 46.0
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.2e-27 129.4 131 60.3
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 3.6e-27 127.9 118 55.9
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 2.3e-26 125.2 112 61.6
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.2e-25 122.9 112 60.7
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 2.0e-25 122.1 105 61.0
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 4.4e-25 120.9 195 43.1
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 5.7e-25 120.6 200 42.5
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 6.3e-24 117.1 675 43.3
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 8.3e-24 116.7 102 56.9
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 1.8e-23 115.5 165 50.9
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 2.7e-22 111.7 107 55.1
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 4.5e-22 110.9 104 55.8
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 5.9e-22 110.5 107 56.1
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 1.7e-21 109.0 104 57.7
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 2.9e-21 108.2 107 55.1
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 3.8e-21 107.8 126 49.2
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 5.0e-21 107.5 104 55.8
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 1.1e-20 106.3 107 54.2
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 2.5e-20 105.1 101 56.4
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 3.3e-20 104.8 145 47.6
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 7.2e-20 103.6 109 52.3
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.8e-19 101.7 101 57.4
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 4.7e-19 100.9 691 33.3
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 4.7e-19 100.9 160 41.9
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 8.0e-19 100.1 109 52.3
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 1.7e-16 92.4 102 48.0
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 3.7e-16 91.3 109 45.9
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 5.4e-15 87.4 63 74.6
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 3.5e-14 84.7 53 79.2
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 4.5e-14 84.3 140 44.3
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 1.0e-13 83.2 113 42.5
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 1.7e-13 82.4 93 45.2
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 2.9e-13 81.6 67 59.7
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 5.0e-13 80.9 53 71.7
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.1e-12 79.7 183 38.3
Oeu026037.1 Olea europaea HOM05D064875 ORTHO05D004564 1.1e-12 79.7 182 39.6
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 1.5e-12 79.3 147 33.3
Haze_21676 Corylus avellana HOM05D063909 ORTHO05D004564 3.3e-12 78.2 205 39.0
Oeu007489.1 Olea europaea HOM05D064875 ORTHO05D004564 1.2e-11 76.3 219 36.1
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 4.0e-10 71.2 79 51.9
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.5e-09 69.3 92 47.8
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 4.4e-09 67.8 180 33.3
SGA_v2.0_scaffold100G29610 Striga asiatica HOM05D000178 ORTHO05D001740 7.5e-09 67.0 64 51.6
CARHR261000 Cardamine hirsuta HOM05D004041 ORTHO05D004564 1.1e-07 63.2 63 55.6
SGA_v2.0_scaffold280G46826 Striga asiatica HOM05D003631 ORTHO05D004219 3.2e-07 61.6 52 53.8
vmacro00641 Vaccinium macrocarpon HOM05D009134 ORTHO05D011284 1.2e-06 59.7 206 35.0
DCAR_000724 Daucus carota HOM05D004041 ORTHO05D004564 6.0e-06 57.4 62 53.2


User provided reference genes

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