Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008751g0030 Nicotiana tabacum HOM05D004670 ORTHO05D008020 2.1e-282 975.3 599 100.0
Nitab4.5_0001348g0230 Nicotiana tabacum HOM05D004670 ORTHO05D008020 3.5e-253 878.2 602 92.5
PGSC0003DMG400006026 Solanum tuberosum HOM05D004670 ORTHO05D008020 2.4e-214 749.2 610 80.8
Sopen11g001140 Solanum pennellii HOM05D004670 ORTHO05D008020 6.0e-205 718.0 606 79.4
Solyc11g005140.1 Solanum lycopersicum HOM05D004670 ORTHO05D008020 5.1e-204 714.9 606 78.7
Peaxi162Scf00066g00021 Petunia axillaris HOM05D004670 ORTHO05D008020 2.8e-194 682.6 613 78.5
CAN.G716.1 Capsicum annuum HOM05D004670 ORTHO05D008020 3.4e-192 675.6 629 75.0
Dinv17145 Davidia involucrata HOM05D004670 ORTHO05D008020 4.6e-120 436.0 552 62.7
Cfa014310 Carpinus fangiana HOM05D004670 ORTHO05D008020 6.6e-119 432.2 610 58.4
CiPaw.07G084800 Carya illinoinensis HOM05D004670 ORTHO05D008020 2.8e-117 426.8 467 68.7
QL10p048429 Quercus lobata HOM05D004670 ORTHO05D008020 1.8e-116 424.1 615 57.9
TAR362G1162 Trochodendron aralioides HOM05D004670 ORTHO05D008020 5.2e-116 422.5 579 56.8
Oeu040399.1 Olea europaea HOM05D004670 ORTHO05D008020 6.8e-116 422.2 653 54.8
CSS0027504 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 1.2e-115 421.4 585 58.8
CSS0030730 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 1.2e-115 421.4 585 58.8
Sed0002677 Sechium edule HOM05D004670 ORTHO05D008020 2.9e-114 416.8 607 56.2
Rhsim05G0163600 Rhododendron simsii HOM05D004670 ORTHO05D008020 4.9e-114 416.0 544 61.2
TWI18G1064 Tripterygium wilfordii HOM05D004670 ORTHO05D008020 2.1e-112 410.6 492 62.6
MELO3C008575.2 Cucumis melo HOM05D004670 ORTHO05D008020 6.0e-112 409.1 560 58.9
Atru.chr2.211 Acer truncatum HOM05D004670 ORTHO05D008020 7.8e-112 408.7 586 57.2
Haze_12758 Corylus avellana HOM05D004670 ORTHO05D008020 1.0e-111 408.3 586 58.0
Aqoxy3G03703 Aquilegia oxysepala HOM05D004670 ORTHO05D008020 1.7e-111 407.5 470 63.4
Lj8P583T10 Lonicera japonica HOM05D004670 ORTHO05D008020 1.5e-110 404.4 491 65.0
Haze_20607 Corylus avellana HOM05D004670 ORTHO05D008020 8.1e-109 398.7 594 55.6
EL10Ac4g10032 Beta vulgaris HOM05D004670 ORTHO05D008020 5.2e-108 396.0 604 54.0
MD00G1017000 Malus domestica HOM05D004670 ORTHO05D008020 6.8e-108 395.6 600 55.7
Gohir.D13G219500 Gossypium hirsutum HOM05D004670 ORTHO05D008020 8.9e-108 395.2 518 60.6
Thecc.06G195000 Theobroma cacao HOM05D004670 ORTHO05D008020 2.6e-107 393.7 561 57.9
EL10Ac7g17697 Beta vulgaris HOM05D004670 ORTHO05D008020 1.7e-106 391.0 616 52.1
Sc16g0010690 Simmondsia chinensis HOM05D004670 ORTHO05D008020 1.9e-105 387.5 613 53.5
CANSAT54G2504 Cannabis sativa HOM05D004670 ORTHO05D008020 9.3e-105 385.2 610 54.4
MBI07_g36706_MAGBIO Magnolia biondii HOM05D004670 ORTHO05D008020 1.2e-104 384.8 507 60.6
Duzib150G0183 Durio zibethinus HOM05D004670 ORTHO05D008020 1.6e-104 384.4 596 54.5
COL.COLO4_09284 Corchorus olitorius HOM05D004670 ORTHO05D008020 6.0e-104 382.5 535 57.6
SGA_v2.0_scaffold52G18920 Striga asiatica HOM05D004670 ORTHO05D008020 3.9e-103 379.8 514 44.7
Manes.13G000200 Manihot esculenta HOM05D004670 ORTHO05D008020 6.6e-103 379.0 464 60.6
Ciclev10004046m.g Citrus clementina HOM05D004670 ORTHO05D008020 4.3e-102 376.3 555 57.8
Gohir.A13G215800 Gossypium hirsutum HOM05D004670 ORTHO05D008020 5.6e-102 375.9 536 57.8
MSTRG.25359 Avicennia marina HOM05D004670 ORTHO05D008020 9.6e-102 375.2 655 51.6
CsaV3_2G010440 Cucumis sativus L. HOM05D004670 ORTHO05D008020 1.3e-101 374.8 560 56.2
Glyma.15G017400 Glycine max HOM05D004670 ORTHO05D008020 1.3e-101 374.8 470 62.6
Phvul.008G212400 Phaseolus vulgaris HOM05D004670 ORTHO05D008020 3.6e-101 373.2 492 59.6
Ah.06g195210 Amaranthus hybridus HOM05D004670 ORTHO05D008020 1.1e-100 371.7 612 50.0
AUR62025405 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.4e-100 371.3 549 56.5
Prupe.6G365500 Prunus persica HOM05D004670 ORTHO05D008020 1.4e-100 371.3 481 63.0
Migut.C01066 Erythranthe guttata HOM05D004670 ORTHO05D008020 6.9e-100 369.0 570 55.6
Ca_16311_v3 Cicer arietinum L. HOM05D004670 ORTHO05D008020 1.5e-99 367.9 467 58.2
Gorai.013G250400 Gossypium raimondii HOM05D004670 ORTHO05D008020 1.5e-99 367.9 527 58.3
DCAR_024376 Daucus carota HOM05D004670 ORTHO05D008020 5.8e-99 365.9 546 58.1
VMungo0647G0492 Vigna mungo HOM05D004670 ORTHO05D008020 5.8e-99 365.9 469 61.8
AUR62008838 Chenopodium quinoa HOM05D004670 ORTHO05D008020 2.9e-98 363.6 529 57.3
HanXRQChr16g0532601 Helianthus annuus HOM05D004670 ORTHO05D008020 2.9e-98 363.6 617 53.2
ECA236G4653 Erigeron canadensis HOM05D004670 ORTHO05D008020 4.9e-98 362.8 483 61.7
Lsat_1_v5_gn_7_7580 Lactuca sativa HOM05D004670 ORTHO05D008020 6.4e-98 362.5 622 51.9
Potri.001G361500 Populus trichocarpa HOM05D004670 ORTHO05D008020 2.4e-97 360.5 595 53.9
SalBow7G4343 Salvia bowleyana HOM05D004670 ORTHO05D008020 4.2e-97 359.8 440 48.0
Sabra16G0238400 Salix brachista HOM05D004670 ORTHO05D008020 5.4e-97 359.4 611 52.5
Glyma.13G356700 Glycine max HOM05D004670 ORTHO05D008020 7.1e-97 359.0 472 61.0
SalBow7G3652 Salvia bowleyana HOM05D004670 ORTHO05D008020 2.1e-96 357.5 440 47.7
Nn1g09528 Nelumbo nucifera HOM05D004670 ORTHO05D008020 1.0e-95 355.1 399 51.9
QL10p044086 Quercus lobata HOM05D004670 ORTHO05D008020 1.1e-94 351.7 312 60.9
ECA246G0724 Erigeron canadensis HOM05D004670 ORTHO05D008020 7.4e-94 349.0 534 57.5
HanXRQChr02g0056371 Helianthus annuus HOM05D004670 ORTHO05D008020 1.3e-93 348.2 547 56.1
Eucgr.B01443 Eucalyptus grandis HOM05D004670 ORTHO05D008020 1.8e-92 344.4 470 60.2
Eucgr.L01231 Eucalyptus grandis HOM05D004670 ORTHO05D008020 4.5e-91 339.7 470 59.8
Cc10_g12810 Coffea canephora HOM05D004670 ORTHO05D008020 5.8e-91 339.3 530 56.4
PGR119G2020 Punica granatum HOM05D004670 ORTHO05D008020 1.7e-90 337.8 467 60.8
RcHm_v2.0_Chr2g0131651 Rosa chinensis HOM05D004670 ORTHO05D008020 1.9e-89 334.3 604 50.8
arahy.Tifrunner.gnm1.ann1.H9JUXY Arachis hypogaea HOM05D004670 ORTHO05D008020 1.2e-88 331.6 481 56.8
Psat5g107920 Pisum sativum HOM05D004670 ORTHO05D008020 1.0e-87 328.6 603 50.1
ATR0743G160 Amborella trichopoda HOM05D004670 ORTHO05D008020 1.8e-87 327.8 566 51.2
TPR.G23340 Trifolium pratense HOM05D004670 ORTHO05D008020 1.1e-86 325.1 486 58.6
FvH4_6g27990 Fragaria vesca HOM05D004670 ORTHO05D008020 5.3e-84 316.2 488 55.5
FAN14G3835 Fragaria x ananassa HOM05D004670 ORTHO05D008020 5.3e-84 316.2 491 55.8
CDE06G0776 Ceratophyllum demersum HOM05D004670 ORTHO05D008020 2.0e-83 314.3 470 41.3
PSO017G2252 Papaver somniferum HOM05D004670 ORTHO05D008020 1.4e-81 308.1 601 49.3
Lalb_Chr13g0290441 Lupinus albus HOM05D004670 ORTHO05D008020 5.5e-81 306.2 529 48.8
Thhalv10020352m.g Eutrema salsugineum HOM05D004670 ORTHO05D008020 7.1e-81 305.8 489 52.1
THA.LOC104827168 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 7.9e-80 302.4 459 58.0
PSO675G7837 Papaver somniferum HOM05D004670 ORTHO05D008020 5.7e-78 296.2 607 48.1
SHI13694 Sapria himalayana HOM05D004670 ORTHO05D008020 7.4e-78 295.8 494 53.6
HPP92_012838 Vanilla planifolia HOM05D004670 ORTHO05D008020 7.4e-78 295.8 462 54.3
Medtr3g081310 Medicago truncatula HOM05D004670 ORTHO05D008020 1.1e-76 292.0 506 51.8
AUR62044648 Chenopodium quinoa HOM05D004670 ORTHO05D008020 5.3e-76 289.7 392 44.6
BolC1t05888H Brassica oleracea HOM05D004670 ORTHO05D008020 9.0e-76 288.9 559 49.9
Lj2g0025819 Lotus japonicus HOM05D004670 ORTHO05D008020 3.4e-75 287.0 482 55.4
THA.LOC104802429 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 4.2e-73 280.0 596 46.1
A03p33060 Brassica napus HOM05D004670 ORTHO05D008020 2.3e-71 274.2 542 50.2
AT3G02650 Arabidopsis thaliana HOM05D004670 ORTHO05D008020 5.1e-71 273.1 551 49.5
BNapus_Darmor_BZH_scaffold_99p00180 Brassica napus HOM05D004670 ORTHO05D008020 6.7e-71 272.7 507 51.7
BraA03t12476Z Brassica rapa HOM05D004670 ORTHO05D008020 8.7e-71 272.3 542 50.0
AL3G12030 Arabidopsis lyrata HOM05D004670 ORTHO05D008020 1.6e-69 268.1 561 48.7
Carub.0003s0177 Capsella rubella HOM05D004670 ORTHO05D008020 6.3e-69 266.2 487 52.6
Cpa.g.sc127.45 Carica papaya HOM05D004670 ORTHO05D008020 2.4e-68 264.2 639 46.6
Sp3g01690 Schrenkiella parvula HOM05D004670 ORTHO05D008020 3.4e-67 260.4 599 46.7
TPR.G9216 Trifolium pratense HOM05D004670 ORTHO05D008020 4.5e-67 260.0 482 35.3
BcaC01g04430 Brassica carinata HOM05D004670 ORTHO05D008020 2.2e-66 257.7 544 49.8
BolC3t16289H Brassica oleracea HOM05D004670 ORTHO05D008020 2.2e-66 257.7 544 49.8
BraSC246t45824Z Brassica rapa HOM05D004670 ORTHO05D008020 1.4e-65 255.0 555 47.7
C03p40240 Brassica napus HOM05D004670 ORTHO05D008020 1.0e-63 248.8 353 42.8
CARHR076670 Cardamine hirsuta HOM05D004670 ORTHO05D008020 3.9e-63 246.9 533 48.2
BNapus_Darmor_BZH_scaffold_122p00150 Brassica napus HOM05D004670 ORTHO05D008020 5.1e-63 246.5 387 39.8
BcaB04g19393 Brassica carinata HOM05D004670 ORTHO05D008020 2.2e-61 241.1 508 50.2
AUR62000265 Chenopodium quinoa HOM05D004670 ORTHO05D008020 3.1e-60 237.3 539 34.1
Lj6g0018960 Lotus japonicus HOM05D004670 ORTHO05D008020 3.4e-59 233.8 490 50.6
CSS0025547 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 2.8e-53 214.2 313 45.4
Dinv17144 Davidia involucrata HOM05D004670 ORTHO05D008020 6.3e-53 213.0 235 48.1
Zm00001eb144640 Zea mays HOM05D004670 ORTHO05D008020 6.3e-53 213.0 557 43.8
Thecc.09G224400 Theobroma cacao HOM05D004670 ORTHO05D008020 2.2e-50 204.5 447 45.6
PGR119G2157 Punica granatum HOM05D004670 ORTHO05D008020 1.1e-49 202.2 440 34.3
SEGI_06910 Sequoiadendron giganteum HOM05D004670 ORTHO05D008020 8.5e-42 176.0 496 41.9
Cpa.g.sc35.62 Carica papaya HOM05D004670 ORTHO05D022223 8.3e-37 159.5 186 48.9
AUR62008837 Chenopodium quinoa HOM05D004670 ORTHO05D008020 2.2e-34 151.4 375 32.5
AUR62006613 Chenopodium quinoa HOM05D004670 ORTHO05D008020 5.5e-33 146.7 360 31.7
TPR.G17089 Trifolium pratense HOM05D004670 ORTHO05D014137 1.3e-29 135.6 305 33.4
Medtr5g092030 Medicago truncatula HOM05D004670 ORTHO05D014137 7.7e-27 126.3 337 29.1
TPR.G25089 Trifolium pratense HOM05D004670 ORTHO05D014137 9.5e-25 119.4 255 33.3
TPR.G5228 Trifolium pratense HOM05D002798 ORTHO05D003052 6.8e-23 113.2 307 30.9
Medtr5g088900 Medicago truncatula HOM05D004670 ORTHO05D014137 2.7e-19 101.3 299 29.1
AUR62044649 Chenopodium quinoa HOM05D004670 ORTHO05D008020 4.6e-19 100.5 63 76.2
VMungo1080G1842 Vigna mungo HOM05D004670 ORTHO05D014137 1.7e-18 98.6 70 68.6
Medtr8g105355 Medicago truncatula HOM05D004670 ORTHO05D014137 1.1e-17 95.9 195 33.8
Medtr8g105450 Medicago truncatula HOM05D004670 ORTHO05D014137 1.1e-17 95.9 195 33.8
Cpa.g.c31883 Carica papaya HOM05D004670 ORTHO05D022223 8.0e-16 89.7 102 48.0
TPR.G5188 Trifolium pratense HOM05D004670 ORTHO05D008020 1.5e-14 85.5 202 31.7
Os01g0897500 Oryza sativa ssp. japonica HOM05D004670 ORTHO05D008020 4.4e-14 84.0 59 66.1
VMungo1215G2433 Vigna mungo HOM05D004670 ORTHO05D014137 5.8e-14 83.6 70 62.9
Medtr1g102600 Medicago truncatula HOM05D004670 ORTHO05D266903 5.4e-12 77.0 129 34.1
Cpa.g.sc209.39 Carica papaya HOM05D004670 ORTHO05D022223 9.2e-12 76.3 85 48.2
Peaxi162Scf00301g00516 Petunia axillaris HOM05D030372 ORTHO05D025854 4.6e-11 73.9 222 33.3
Peaxi162Scf00301g00517 Petunia axillaris HOM05D030372 ORTHO05D025854 4.6e-11 73.9 222 33.3
Peaxi162Scf00301g00518 Petunia axillaris HOM05D030372 ORTHO05D025854 4.6e-11 73.9 222 33.3
Cpa.g.sc15.139 Carica papaya HOM05D004670 ORTHO05D022223 6.6e-10 70.1 208 30.8
TPR.G10813 Trifolium pratense HOM05D004670 ORTHO05D008020 8.6e-10 69.7 85 42.4
Oeu039630.1 Olea europaea HOM05D004670 ORTHO05D025854 1.1e-09 69.3 55 70.9
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 1.5e-09 68.9 258 24.0
Medtr5g095780 Medicago truncatula HOM05D004670 ORTHO05D008020 1.5e-09 68.9 66 47.0
ClCG10G018100 Citrullus lanatus HOM05D006596 ORTHO05D008497 2.5e-09 68.2 244 24.6
Ca_09603_v3 Cicer arietinum L. HOM05D004670 ORTHO05D014137 7.3e-09 66.6 173 31.8
CANSAT64G0970 Cannabis sativa HOM05D006596 ORTHO05D008497 1.4e-07 62.4 265 25.7
A03p08810 Brassica napus HOM05D007661 ORTHO05D009671 8.9e-07 59.7 153 25.5
C03p10300 Brassica napus HOM05D007661 ORTHO05D009671 1.2e-06 59.3 153 25.5
BraA03t10206Z Brassica rapa HOM05D007661 ORTHO05D009671 1.2e-06 59.3 153 25.5
Cpa.g.sc93.21 Carica papaya HOM05D004670 ORTHO05D022223 1.2e-06 59.3 93 40.9
Medtr3g108743 Medicago truncatula HOM05D030372 ORTHO05D025854 2.0e-06 58.5 72 44.4
CARHR194640 Cardamine hirsuta HOM05D007661 ORTHO05D009671 2.6e-06 58.2 163 24.5
BcaB01g05190 Brassica carinata HOM05D007661 ORTHO05D009671 5.8e-06 57.0 153 24.8
ECA238G2420 Erigeron canadensis HOM05D006596 ORTHO05D008497 5.8e-06 57.0 269 25.7
SGA_v2.0_scaffold8G04573 Striga asiatica HOM05D000424 ORTHO05D002854 5.8e-06 57.0 175 23.4
Carub.0006s1665 Capsella rubella HOM05D007661 ORTHO05D009671 7.5e-06 56.6 153 25.5
Sp6g25930 Schrenkiella parvula HOM05D007661 ORTHO05D009671 7.5e-06 56.6 153 24.8
Aa31LG11G11280 Aethionema arabicum HOM05D007661 ORTHO05D009671 9.8e-06 56.2 153 24.8
AL6G29620 Arabidopsis lyrata HOM05D007661 ORTHO05D009671 9.8e-06 56.2 153 25.5
AT5G18390 Arabidopsis thaliana HOM05D007661 ORTHO05D009671 9.8e-06 56.2 153 25.5


User provided reference genes

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