Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008746g0020 Nicotiana tabacum HOM05D006660 ORTHO05D008184 0.0e+00 1192.2 592 100.0
Nitab4.5_0000130g0170 Nicotiana tabacum HOM05D006660 ORTHO05D008184 0.0e+00 1135.2 595 95.0
Peaxi162Scf01333g00136 Petunia axillaris HOM05D006660 ORTHO05D008184 1.2e-309 1065.8 588 90.5
Solyc07g049590.3 Solanum lycopersicum HOM05D006660 ORTHO05D008184 2.9e-308 1061.2 572 92.5
PGSC0003DMG400006428 Solanum tuberosum HOM05D006660 ORTHO05D008184 4.6e-306 1053.9 572 92.0
Sopen07g024990 Solanum pennellii HOM05D006660 ORTHO05D008184 6.0e-306 1053.5 572 91.8
CAN.G784.8 Capsicum annuum HOM05D006660 ORTHO05D008184 6.2e-303 1043.5 571 90.5
CSS0034515 Camellia sinensis var. sinensis HOM05D006660 ORTHO05D008184 9.3e-275 949.9 563 83.5
Rhsim04G0045800 Rhododendron simsii HOM05D006660 ORTHO05D008184 3.1e-270 934.9 584 79.1
Cc10_g08860 Coffea canephora HOM05D006660 ORTHO05D008184 9.0e-270 933.3 574 80.3
Actinidia10783 Actinidia chinensis HOM05D006660 ORTHO05D008184 2.5e-267 925.2 569 81.0
Thecc.01G186300 Theobroma cacao HOM05D006660 ORTHO05D008184 2.6e-261 905.2 571 79.5
Potri.014G163200 Populus trichocarpa HOM05D006660 ORTHO05D008184 3.4e-261 904.8 559 80.1
Atru.chr6.3323 Acer truncatum HOM05D006660 ORTHO05D008184 2.9e-260 901.7 566 79.3
Lsat_1_v5_gn_5_124741 Lactuca sativa HOM05D006660 ORTHO05D008184 2.5e-259 898.7 559 79.1
TAR626G1025 Trochodendron aralioides HOM05D006660 ORTHO05D008184 2.5e-259 898.7 568 78.7
Manes.12G060700 Manihot esculenta HOM05D006660 ORTHO05D008184 3.2e-259 898.3 568 79.6
Gorai.001G097700 Gossypium raimondii HOM05D006660 ORTHO05D008184 4.2e-259 897.9 564 78.9
TWI36G0095 Tripterygium wilfordii HOM05D006660 ORTHO05D008184 2.1e-258 895.6 568 77.8
Nn1g07385 Nelumbo nucifera HOM05D006660 ORTHO05D008184 3.6e-258 894.8 569 78.2
HanXRQChr10g0306331 Helianthus annuus HOM05D006660 ORTHO05D008184 2.3e-257 892.1 564 78.5
Duzib133G0254 Durio zibethinus HOM05D006660 ORTHO05D008184 6.7e-257 890.6 569 77.9
PGR142G4370 Punica granatum HOM05D006660 ORTHO05D008184 8.8e-257 890.2 577 76.6
Sabra14G0124600 Salix brachista HOM05D006660 ORTHO05D008184 5.7e-256 887.5 559 79.1
RcHm_v2.0_Chr2g0157231 Rosa chinensis HOM05D006660 ORTHO05D008184 7.4e-256 887.1 564 78.2
FAN14G2696 Fragaria x ananassa HOM05D006660 ORTHO05D008184 2.2e-255 885.6 564 78.0
FAN14G4026 Fragaria x ananassa HOM05D006660 ORTHO05D008184 2.2e-255 885.6 564 78.0
MSTRG.14936 Avicennia marina HOM05D006660 ORTHO05D008184 6.3e-255 884.0 565 77.2
PSO541G2904 Papaver somniferum HOM05D006660 ORTHO05D008184 3.1e-254 881.7 570 75.4
AUR62015095 Chenopodium quinoa HOM05D006660 ORTHO05D008184 4.1e-254 881.3 560 76.8
FvH4_6g41550 Fragaria vesca HOM05D006660 ORTHO05D008184 4.1e-254 881.3 564 77.8
FAN02G1797 Fragaria x ananassa HOM05D006660 ORTHO05D008184 6.9e-254 880.6 563 77.6
Prupe.3G205300 Prunus persica HOM05D006660 ORTHO05D008184 9.1e-254 880.2 569 77.3
Sc20g0003860 Simmondsia chinensis HOM05D006660 ORTHO05D008184 9.1e-254 880.2 580 76.9
DCAR_019721 Daucus carota HOM05D006660 ORTHO05D008184 2.0e-253 879.0 562 77.6
Ciclev10014722m.g Citrus clementina HOM05D006660 ORTHO05D008184 3.4e-253 878.2 572 76.0
PSO675G7408 Papaver somniferum HOM05D006660 ORTHO05D008184 1.3e-252 876.3 566 75.4
arahy.Tifrunner.gnm1.ann1.7S53TL Arachis hypogaea HOM05D006660 ORTHO05D008184 4.2e-251 871.3 568 77.1
arahy.Tifrunner.gnm1.ann1.GN08CG Arachis hypogaea HOM05D006660 ORTHO05D008184 4.2e-251 871.3 568 77.1
CANSAT64G1453 Cannabis sativa HOM05D006660 ORTHO05D008184 5.5e-251 870.9 567 76.0
arahy.Tifrunner.gnm1.ann1.V90YU5 Arachis hypogaea HOM05D006660 ORTHO05D008184 1.6e-250 869.4 564 77.3
FAN05G5067 Fragaria x ananassa HOM05D006660 ORTHO05D008184 3.6e-250 868.2 563 77.3
Eucgr.K00713 Eucalyptus grandis HOM05D006660 ORTHO05D008184 6.1e-250 867.5 569 74.9
MELO3C019360.2 Cucumis melo HOM05D006660 ORTHO05D008184 1.3e-247 859.8 565 76.3
Migut.M00006 Erythranthe guttata HOM05D006660 ORTHO05D008184 8.2e-247 857.1 575 75.5
CsaV3_2G034260 Cucumis sativus L. HOM05D006660 ORTHO05D008184 4.1e-246 854.7 562 76.5
Ca_16352_v3 Cicer arietinum L. HOM05D006660 ORTHO05D008184 2.0e-245 852.4 590 74.4
THA.LOC104808860 Tarenaya hassleriana HOM05D006660 ORTHO05D008184 2.0e-245 852.4 561 74.3
ClCG02G009540 Citrullus lanatus HOM05D006660 ORTHO05D008184 2.6e-245 852.0 588 73.3
Gohir.A07G086100 Gossypium hirsutum HOM05D006660 ORTHO05D008184 1.0e-244 850.1 564 75.5
Sed0019714 Sechium edule HOM05D006660 ORTHO05D008184 3.2e-243 845.1 569 75.6
Thhalv10002462m.g Eutrema salsugineum HOM05D006660 ORTHO05D008184 1.6e-242 842.8 570 72.5
Medtr3g082870 Medicago truncatula HOM05D006660 ORTHO05D008184 3.0e-241 838.6 580 72.9
AT2G04740 Arabidopsis thaliana HOM05D006660 ORTHO05D008184 5.2e-241 837.8 569 72.1
MBI16_g31717_MAGBIO Magnolia biondii HOM05D006660 ORTHO05D008184 1.1e-240 836.6 571 72.3
EL10Ac3g05658 Beta vulgaris HOM05D006660 ORTHO05D008184 2.0e-240 835.9 570 72.6
Glyma.20G057100 Glycine max HOM05D006660 ORTHO05D008184 2.0e-240 835.9 585 71.3
TPR.G22464 Trifolium pratense HOM05D006660 ORTHO05D008184 7.4e-240 833.9 570 73.3
SGA_v2.0_scaffold73G24530 Striga asiatica HOM05D006660 ORTHO05D008184 1.3e-239 833.2 578 71.8
AUR62017555 Chenopodium quinoa HOM05D006660 ORTHO05D008184 2.2e-239 832.4 618 68.4
Sp3g23370 Schrenkiella parvula HOM05D006660 ORTHO05D008184 2.2e-239 832.4 570 71.4
AL3G42350 Arabidopsis lyrata HOM05D006660 ORTHO05D008184 1.4e-238 829.7 572 71.7
Ah.14g082930 Amaranthus hybridus HOM05D006660 ORTHO05D008184 7.0e-238 827.4 561 72.2
Aqoxy1G02841 Aquilegia oxysepala HOM05D006660 ORTHO05D008184 1.6e-237 826.2 594 69.4
Aa31sc53G10 Aethionema arabicum HOM05D006660 ORTHO05D008184 2.0e-237 825.9 573 70.7
Psat5g103920 Pisum sativum HOM05D006660 ORTHO05D008184 5.9e-237 824.3 604 69.9
Carub.0003s2635 Capsella rubella HOM05D006660 ORTHO05D008184 3.8e-236 821.6 571 71.5
Lj6g0000837 Lotus japonicus HOM05D006660 ORTHO05D008184 1.9e-235 819.3 549 74.9
HPP92_017850 Vanilla planifolia HOM05D006660 ORTHO05D008184 2.5e-235 818.9 561 72.5
BcaC01g03192 Brassica carinata HOM05D006660 ORTHO05D008184 1.6e-234 816.2 567 70.9
C03p55040 Brassica napus HOM05D006660 ORTHO05D008184 4.7e-234 814.7 567 70.9
CARHR102690 Cardamine hirsuta HOM05D006660 ORTHO05D008184 4.7e-234 814.7 572 70.3
A03p44410 Brassica napus HOM05D006660 ORTHO05D008184 6.1e-234 814.3 567 70.4
BcaB08g34485 Brassica carinata HOM05D006660 ORTHO05D008184 1.4e-233 813.1 567 70.5
COL.COLO4_35986 Corchorus olitorius HOM05D006660 ORTHO05D008184 1.8e-233 812.8 573 72.8
BolC3t17779H Brassica oleracea HOM05D006660 ORTHO05D008184 3.0e-233 812.0 574 70.2
BraA03t13574Z Brassica rapa HOM05D006660 ORTHO05D008184 1.2e-232 810.1 574 70.0
FAN09G0285 Fragaria x ananassa HOM05D006660 ORTHO05D008184 2.8e-231 805.4 563 72.8
ECA234G1491 Erigeron canadensis HOM05D006660 ORTHO05D008184 9.8e-224 780.4 558 71.1
Haze_12725 Corylus avellana HOM05D006660 ORTHO05D008184 3.6e-218 761.9 457 81.6
Zm00001eb281240 Zea mays HOM05D006660 ORTHO05D008184 3.3e-211 738.8 586 64.8
CiPaw.04G193900 Carya illinoinensis HOM05D006660 ORTHO05D008184 7.3e-211 737.6 466 78.1
Os06g0318200 Oryza sativa ssp. japonica HOM05D006660 ORTHO05D008184 1.3e-207 726.9 568 66.4
SEGI_29705 Sequoiadendron giganteum HOM05D006660 ORTHO05D008184 9.2e-206 720.7 625 61.0
vmacro09381 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 6.0e-197 691.4 441 78.7
Cpa.g.sc132.76 Carica papaya HOM05D006660 ORTHO05D008184 1.1e-195 687.2 461 73.5
Dinv07831 Davidia involucrata HOM05D006660 ORTHO05D008184 1.9e-190 669.8 408 81.1
Mapoly0031s0110 Marchantia polymorpha HOM05D006660 ORTHO05D008184 1.3e-183 647.1 631 55.9
Oeu040482.1 Olea europaea HOM05D006660 ORTHO05D008184 2.9e-183 646.0 404 79.0
Lalb_Chr24g0402731 Lupinus albus HOM05D006660 ORTHO05D008184 9.2e-182 641.0 418 75.4
Gohir.D07G091200 Gossypium hirsutum HOM05D006660 ORTHO05D008184 4.6e-181 638.6 415 75.9
Pp3c5_19510 Physcomitrium patens HOM05D006660 ORTHO05D008184 6.2e-178 628.2 619 55.1
Pp3c5_19514 Physcomitrium patens HOM05D006660 ORTHO05D008184 6.2e-178 628.2 619 55.1
VMungo1309G1541 Vigna mungo HOM05D006660 ORTHO05D008184 3.5e-173 612.5 416 72.8
CDE07G0400 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 2.8e-170 602.8 410 72.9
Atru.chr6.3318 Acer truncatum HOM05D006660 ORTHO05D008184 7.9e-165 584.7 401 73.6
ATR0712G111 Amborella trichopoda HOM05D006660 ORTHO05D008184 1.6e-162 577.0 415 68.7
MD17G1109800 Malus domestica HOM05D006660 ORTHO05D008184 8.7e-156 554.7 562 55.0
SMO353G0185 Selaginella moellendorffii HOM05D006660 ORTHO05D008184 5.3e-153 545.4 543 53.4
Lj8A132T54 Lonicera japonica HOM05D006660 ORTHO05D008184 6.3e-146 521.9 309 81.9
GSVIVG01030415001 Vitis vinifera HOM05D006660 ORTHO05D008184 5.3e-137 492.3 305 79.3
Hund08409 Selenicereus undatus HOM05D006660 ORTHO05D008184 3.5e-128 463.0 312 72.4
AagrBONN_evm.TU.Sc2ySwM_344.2917 Anthoceros agrestis HOM05D006660 ORTHO05D008184 1.1e-123 448.0 551 45.6
CBR_g47999 Chara braunii HOM05D006660 ORTHO05D008184 4.7e-117 426.0 653 39.4
Lj8C132T7 Lonicera japonica HOM05D006660 ORTHO05D008184 3.7e-114 416.4 239 85.8
GSVIVG01030416001 Vitis vinifera HOM05D006660 ORTHO05D008184 2.6e-91 340.5 197 83.8
CDE04G2012 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 7.1e-81 305.8 561 37.3
Oeu040483.1 Olea europaea HOM05D006660 ORTHO05D008184 2.5e-78 297.4 175 85.7
AagrBONN_evm.TU.Sc2ySwM_228.2541 Anthoceros agrestis HOM05D006660 ORTHO05D008184 4.4e-67 260.0 408 39.2
CDE07G1994 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.1e-60 238.8 154 73.4
Phvul.004G085870 Phaseolus vulgaris HOM05D006660 ORTHO05D008184 4.9e-58 229.9 132 82.6
ATR0712G102 Amborella trichopoda HOM05D006660 ORTHO05D008184 6.4e-58 229.6 132 80.3
VMungo1309G0792 Vigna mungo HOM05D006660 ORTHO05D008184 1.3e-55 221.9 130 80.0
Lalb_Chr24g0402711 Lupinus albus HOM05D006660 ORTHO05D008184 3.9e-47 193.7 102 89.2
Atru.chr6.3319 Acer truncatum HOM05D006660 ORTHO05D008184 6.9e-44 183.0 153 64.1
Cpa.g.sc987.1 Carica papaya HOM05D006660 ORTHO05D008184 3.5e-40 170.6 103 82.5
vmacro09380 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 5.9e-35 153.3 165 52.1
HanXRQChr08g0218831 Helianthus annuus HOM05D006660 ORTHO05D008184 3.4e-27 127.5 66 87.9
CDE04G2605 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 3.6e-16 90.9 54 74.1
Cfa027280 Carpinus fangiana HOM05D006660 ORTHO05D008184 2.8e-13 81.3 439 24.1
Os08g0523850 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D008184 1.4e-07 62.4 148 31.8
Os08g0406500 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 4.4e-06 57.4 139 26.6


User provided reference genes

Program Settings