Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008653g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 3.1e-136 488.4 242 100.0
Nitab4.5_0006454g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 4.1e-128 461.5 242 94.6
Solyc10g081590.2 Solanum lycopersicum HOM05D005267 ORTHO05D006303 3.5e-111 405.2 242 84.3
PGSC0003DMG400028129 Solanum tuberosum HOM05D005267 ORTHO05D006303 6.0e-111 404.4 242 84.3
Sopen10g032100 Solanum pennellii HOM05D005267 ORTHO05D006303 1.3e-110 403.3 242 84.3
Actinidia37788 Actinidia chinensis HOM05D005267 ORTHO05D006303 1.3e-97 360.1 240 75.8
Cc06_g07120 Coffea canephora HOM05D005267 ORTHO05D006303 3.7e-97 358.6 222 77.9
Oeu063094.3 Olea europaea HOM05D005267 ORTHO05D006303 1.1e-93 347.1 215 78.6
SGA_v2.0_scaffold41G15783 Striga asiatica HOM05D005267 ORTHO05D006303 1.5e-93 346.7 229 74.7
Rhsim03G0057300 Rhododendron simsii HOM05D005267 ORTHO05D006303 1.2e-92 343.6 223 76.7
Migut.L01860 Erythranthe guttata HOM05D005267 ORTHO05D006303 3.6e-92 342.0 236 71.6
arahy.Tifrunner.gnm1.ann1.3RXG3F Arachis hypogaea HOM05D005267 ORTHO05D006303 4.0e-91 338.6 230 73.9
arahy.Tifrunner.gnm1.ann1.H25EQ1 Arachis hypogaea HOM05D005267 ORTHO05D006303 5.2e-91 338.2 230 73.9
CSS0044429 Camellia sinensis var. sinensis HOM05D005267 ORTHO05D006303 1.5e-90 336.7 239 70.7
COL.COLO4_29458 Corchorus olitorius HOM05D005267 ORTHO05D006303 2.0e-90 336.3 245 72.2
MELO3C024594.2 Cucumis melo HOM05D005267 ORTHO05D006303 2.0e-90 336.3 226 73.9
HanXRQChr01g0026301 Helianthus annuus HOM05D005267 ORTHO05D006303 2.6e-90 335.9 221 75.1
MBI05_g37655_MAGBIO Magnolia biondii HOM05D005267 ORTHO05D006303 4.4e-90 335.1 240 68.8
CsaV3_6G041190 Cucumis sativus L. HOM05D005267 ORTHO05D006303 9.9e-90 334.0 226 73.9
Peaxi162Scf00060g01112 Petunia axillaris HOM05D005267 ORTHO05D006303 2.9e-89 332.4 235 74.0
ClCG01G015080 Citrullus lanatus HOM05D005267 ORTHO05D006303 4.9e-89 331.6 224 73.2
Thecc.05G181400 Theobroma cacao HOM05D005267 ORTHO05D006303 4.9e-89 331.6 227 74.0
Lsat_1_v5_gn_1_56341 Lactuca sativa HOM05D005267 ORTHO05D006303 6.4e-89 331.3 233 71.7
PGR142G1416 Punica granatum HOM05D005267 ORTHO05D006303 6.4e-89 331.3 224 74.6
Ca_18103_v3 Cicer arietinum L. HOM05D005267 ORTHO05D006303 1.1e-88 330.5 222 73.0
Medtr1g054315 Medicago truncatula HOM05D005267 ORTHO05D006303 1.1e-88 330.5 226 73.5
DCAR_013470 Daucus carota HOM05D006729 ORTHO05D008502 2.4e-88 329.3 218 75.2
Psat6g110480 Pisum sativum HOM05D005267 ORTHO05D006303 2.4e-88 329.3 222 73.0
Cfa020104 Carpinus fangiana HOM05D005267 ORTHO05D006303 7.1e-88 327.8 242 69.4
Glyma.02G167800 Glycine max HOM05D005267 ORTHO05D006303 1.2e-87 327.0 225 72.0
Cpa.g.sc85.6 Carica papaya HOM05D005267 ORTHO05D006303 3.5e-87 325.5 233 70.0
TAR623G0682 Trochodendron aralioides HOM05D005267 ORTHO05D006303 3.5e-87 325.5 216 74.5
Lj5g0006264 Lotus japonicus HOM05D005267 ORTHO05D006303 4.6e-87 325.1 226 70.8
Duzib128G1921 Durio zibethinus HOM05D005267 ORTHO05D006303 7.8e-87 324.3 243 69.5
TPR.G30771 Trifolium pratense HOM05D005267 ORTHO05D006303 7.8e-87 324.3 222 72.5
TWI77G0597 Tripterygium wilfordii HOM05D005267 ORTHO05D006303 1.0e-86 323.9 227 70.9
Atru.chr8.1242 Acer truncatum HOM05D005267 ORTHO05D006303 1.3e-86 323.6 225 73.3
Haze_20086 Corylus avellana HOM05D005267 ORTHO05D006303 1.3e-86 323.6 242 67.8
Lalb_Chr02g0153991 Lupinus albus HOM05D005267 ORTHO05D006303 1.3e-86 323.6 220 73.6
ECA248G0309 Erigeron canadensis HOM05D005267 ORTHO05D006303 2.3e-86 322.8 225 71.1
Eucgr.A02521 Eucalyptus grandis HOM05D005267 ORTHO05D006303 2.3e-86 322.8 230 72.2
Glyma.09G103300 Glycine max HOM05D005267 ORTHO05D006303 6.6e-86 321.2 225 70.7
Ciclev10012610m.g Citrus clementina HOM05D005267 ORTHO05D006303 1.5e-85 320.1 242 66.9
Nn6g32442 Nelumbo nucifera HOM05D005267 ORTHO05D006303 5.6e-85 318.2 222 71.2
QL07p025833 Quercus lobata HOM05D005267 ORTHO05D006303 9.6e-85 317.4 227 70.5
CANSAT64G2985 Cannabis sativa HOM05D005267 ORTHO05D006303 1.3e-84 317.0 230 67.4
Lalb_Chr21g0316191 Lupinus albus HOM05D005267 ORTHO05D006303 1.3e-84 317.0 221 71.0
Lj1A1066G52 Lonicera japonica HOM05D005267 ORTHO05D006303 3.6e-84 315.5 242 69.0
RcHm_v2.0_Chr3g0477741 Rosa chinensis HOM05D005267 ORTHO05D006303 4.8e-84 315.1 235 65.1
RcHm_v2.0_Chr3g0477781 Rosa chinensis HOM05D005267 ORTHO05D006303 4.8e-84 315.1 235 65.1
CiPaw.10G022300 Carya illinoinensis HOM05D005267 ORTHO05D006303 6.2e-84 314.7 219 72.6
Eucgr.A02526 Eucalyptus grandis HOM05D005267 ORTHO05D006303 8.1e-84 314.3 218 73.4
unitig_899.g15196 Utricularia gibba HOM05D005267 ORTHO05D006303 8.1e-84 314.3 225 68.4
GSVIVG01022470001 Vitis vinifera HOM05D005267 ORTHO05D006303 1.4e-83 313.5 212 71.2
Thhalv10006199m.g Eutrema salsugineum HOM05D005267 ORTHO05D006303 4.0e-83 312.0 223 69.5
FvH4_6g21270 Fragaria vesca HOM05D005267 ORTHO05D006303 6.9e-83 311.2 223 68.6
FAN05G1850 Fragaria x ananassa HOM05D005267 ORTHO05D006303 2.6e-82 309.3 223 68.6
Sed0012434 Sechium edule HOM05D005267 ORTHO05D006303 2.6e-82 309.3 217 70.5
FAN14G1206 Fragaria x ananassa HOM05D005267 ORTHO05D006303 4.4e-82 308.5 223 67.7
FAN02G1071 Fragaria x ananassa HOM05D005267 ORTHO05D006303 5.8e-82 308.1 223 67.7
Potri.016G063600 Populus trichocarpa HOM05D005267 ORTHO05D006303 9.9e-82 307.4 239 66.1
Aqoxy1G00565 Aquilegia oxysepala HOM05D005267 ORTHO05D006303 8.4e-81 304.3 220 69.1
Zm00001eb057270 Zea mays HOM05D005267 ORTHO05D006303 8.4e-81 304.3 240 64.2
AT3G58470 Arabidopsis thaliana HOM05D005267 ORTHO05D006303 1.1e-80 303.9 223 69.1
Prupe.7G087000 Prunus persica HOM05D005267 ORTHO05D006303 1.1e-80 303.9 233 67.0
THA.LOC104821240 Tarenaya hassleriana HOM05D005267 ORTHO05D006303 1.1e-80 303.9 231 64.9
Sp5g04410 Schrenkiella parvula HOM05D005267 ORTHO05D006303 1.9e-80 303.1 223 68.6
AL5G40230 Arabidopsis lyrata HOM05D005267 ORTHO05D006303 4.2e-80 302.0 237 64.6
BraA09t40549Z Brassica rapa HOM05D005267 ORTHO05D006303 7.1e-80 301.2 229 66.4
PSO384G1433 Papaver somniferum HOM05D005267 ORTHO05D006303 7.1e-80 301.2 219 69.4
FAN05G5707 Fragaria x ananassa HOM05D005267 ORTHO05D006303 2.7e-79 299.3 237 64.1
Carub.0005s2521 Capsella rubella HOM05D005267 ORTHO05D006303 3.5e-79 298.9 236 65.7
Aa31LG10G13030 Aethionema arabicum HOM05D006729 ORTHO05D008502 6.0e-79 298.1 220 68.2
BcaC07g40203 Brassica carinata HOM05D005267 ORTHO05D006303 6.0e-79 298.1 228 65.4
CARHR168860 Cardamine hirsuta HOM05D005267 ORTHO05D006303 7.9e-79 297.7 224 66.5
Sabra16G0066000 Salix brachista HOM05D005267 ORTHO05D006303 7.9e-79 297.7 215 68.4
Phvul.007G264300 Phaseolus vulgaris HOM05D005267 ORTHO05D006303 6.6e-78 294.7 225 64.4
VMungo0720G2658 Vigna mungo HOM05D005267 ORTHO05D006303 8.7e-78 294.3 225 64.0
MD14G1048200 Malus domestica HOM05D005267 ORTHO05D006303 3.3e-77 292.4 236 64.4
BcaC07g40256 Brassica carinata HOM05D005267 ORTHO05D006303 4.3e-77 292.0 223 66.4
CDE05G1441 Ceratophyllum demersum HOM05D005267 ORTHO05D006303 3.6e-76 288.9 220 66.4
Hund15032 Selenicereus undatus HOM05D005267 ORTHO05D006303 6.2e-76 288.1 230 64.3
Os03g0749900 Oryza sativa ssp. japonica HOM05D005267 ORTHO05D006303 5.3e-75 285.0 225 64.0
BolC8t50983H Brassica oleracea HOM05D006729 ORTHO05D008502 9.0e-75 284.3 231 64.1
EL10Ac5g11779 Beta vulgaris HOM05D005267 ORTHO05D006303 1.5e-74 283.5 228 61.0
AUR62036286 Chenopodium quinoa HOM05D005267 ORTHO05D006303 1.5e-74 283.5 231 60.6
C08p33850 Brassica napus HOM05D006729 ORTHO05D008502 2.0e-74 283.1 231 63.6
A09p51030 Brassica napus HOM05D006729 ORTHO05D008502 1.3e-73 280.4 229 63.3
AUR62039735 Chenopodium quinoa HOM05D005267 ORTHO05D006303 2.1e-71 273.1 248 56.5
ATR0697G123 Amborella trichopoda HOM05D006729 ORTHO05D008502 5.1e-70 268.5 227 59.9
Gorai.006G146100 Gossypium raimondii HOM05D005267 ORTHO05D006303 2.5e-69 266.2 259 58.3
Dinv11912 Davidia involucrata HOM05D005267 ORTHO05D006303 8.1e-68 261.2 208 67.8
Gohir.A09G131300 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.4e-67 260.4 242 59.5
CAN.G128.157 Capsicum annuum HOM05D005267 ORTHO05D006303 8.4e-65 251.1 131 88.5
Pp3c20_23410 Physcomitrium patens HOM05D005267 ORTHO05D006303 3.0e-62 242.7 234 53.4
Sc01g0005180 Simmondsia chinensis HOM05D005267 ORTHO05D006303 1.1e-59 234.2 179 67.0
Mapoly0207s0006 Marchantia polymorpha HOM05D005267 ORTHO05D006303 6.5e-57 224.9 230 50.4
vmacro07530 Vaccinium macrocarpon HOM05D005267 ORTHO05D006303 6.5e-57 224.9 129 80.6
Zm00001eb155770 Zea mays HOM05D000737 ORTHO05D006303 2.2e-52 209.9 193 58.5
Rhsim03G0057000 Rhododendron simsii HOM05D005267 ORTHO05D006303 3.7e-52 209.1 150 72.0
Hund24299 Selenicereus undatus HOM05D005267 ORTHO05D006303 2.4e-51 206.5 124 75.0
Hund24301 Selenicereus undatus HOM05D005267 ORTHO05D006303 2.4e-51 206.5 124 75.0
Zm00001eb307210 Zea mays HOM05D005267 ORTHO05D006303 5.3e-51 205.3 205 55.1
Gohir.D09G127600 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.5e-50 203.8 168 66.1
Gohir.D09G127100 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.0e-50 203.4 169 65.7
BcaC07g40255 Brassica carinata HOM05D005267 ORTHO05D006303 3.6e-47 192.6 188 57.4
Manes.08G038900 Manihot esculenta HOM05D005267 ORTHO05D006303 7.9e-47 191.4 147 66.0
CBR_g551 Chara braunii HOM05D005267 ORTHO05D006303 6.5e-41 171.8 253 39.1
BolC4t23005H Brassica oleracea HOM05D005267 ORTHO05D006303 1.1e-40 171.0 134 61.9
Zm00001eb020160 Zea mays HOM05D005267 ORTHO05D006303 4.2e-40 169.1 104 73.1
arahy.Tifrunner.gnm1.ann1.TFGA9S Arachis hypogaea HOM05D005267 ORTHO05D006303 1.8e-38 163.7 120 65.0
SEGI_05913 Sequoiadendron giganteum HOM05D005267 ORTHO05D006303 3.9e-38 162.5 149 56.4
Zm00001eb298070 Zea mays HOM05D005267 ORTHO05D006303 3.1e-35 152.9 140 57.9
C04p14160 Brassica napus HOM05D005267 ORTHO05D006303 1.2e-34 151.0 118 62.7
AagrBONN_evm.TU.Sc2ySwM_344.4688 Anthoceros agrestis HOM05D005267 ORTHO05D006303 7.2e-32 141.7 151 47.0
Gorai.011G111300 Gossypium raimondii HOM05D005267 ORTHO05D006303 4.4e-29 132.5 76 80.3
Gorai.013G089700 Gossypium raimondii HOM05D005267 ORTHO05D006303 2.8e-28 129.8 133 54.1
Gorai.001G205400 Gossypium raimondii HOM05D005267 ORTHO05D006303 4.8e-28 129.0 76 76.3
Gohir.D12G044850 Gossypium hirsutum HOM05D005267 ORTHO05D006303 6.3e-28 128.6 75 80.0
Gohir.D03G023232 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.4e-27 127.5 76 78.9
Gohir.A01G123000 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.4e-27 126.7 76 77.6
Gohir.A06G056200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.4e-27 126.7 76 77.6
Gohir.D08G106200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.1e-27 125.9 75 78.7
Gohir.D11G259301 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.1e-27 125.9 75 78.7
Zm00001eb334640 Zea mays HOM05D005267 ORTHO05D006303 5.9e-26 122.1 68 79.4
Rhsim03G0056100 Rhododendron simsii HOM05D000045 ORTHO05D006303 1.7e-25 120.6 103 65.0
Zm00001eb096050 Zea mays HOM05D005267 ORTHO05D006303 1.9e-24 117.1 135 52.6
arahy.Tifrunner.gnm1.ann1.74GVQ2 Arachis hypogaea HOM05D005267 ORTHO05D006303 4.7e-23 112.5 68 73.5
MSTRG.10424 Avicennia marina HOM05D005267 ORTHO05D006303 5.2e-22 109.0 99 57.6
HPP92_004175 Vanilla planifolia HOM05D002029 ORTHO05D002158 1.2e-18 97.8 96 56.2
Glyma.03G214201 Glycine max HOM05D005267 ORTHO05D006303 5.0e-17 92.4 80 58.8
Gohir.D06G067600 Gossypium hirsutum HOM05D003508 ORTHO05D006303 8.5e-17 91.7 82 59.8
arahy.Tifrunner.gnm1.ann1.HYSL0N Arachis hypogaea HOM05D005267 ORTHO05D006303 1.1e-16 91.3 82 52.4
arahy.Tifrunner.gnm1.ann1.PYJ9JQ Arachis hypogaea HOM05D005267 ORTHO05D006303 1.9e-16 90.5 64 67.2
ClCG03G011770 Citrullus lanatus HOM05D000002 ORTHO05D015610 1.9e-16 90.5 55 72.7
A04p02570 Brassica napus HOM05D005267 ORTHO05D006303 1.6e-15 87.4 73 60.3
BcaB02g08262 Brassica carinata HOM05D005267 ORTHO05D006303 3.6e-15 86.3 103 49.5
Gohir.D06G044601 Gossypium hirsutum HOM05D003508 ORTHO05D006303 8.0e-15 85.1 43 83.7
Cfa022098 Carpinus fangiana HOM05D005267 ORTHO05D125748 1.2e-13 81.3 176 34.1
Gorai.011G067100 Gossypium raimondii HOM05D005267 ORTHO05D006303 2.0e-13 80.5 51 70.6
VMungo0464G2161 Vigna mungo HOM05D005267 ORTHO05D006303 1.7e-12 77.4 152 34.2
CBR_g49867 Chara braunii HOM05D000019 ORTHO05D000353 1.4e-11 74.3 166 27.1
SMO143G0102 Selaginella moellendorffii HOM05D005267 ORTHO05D006303 2.4e-11 73.6 185 27.0
Mapoly0004s0240 Marchantia polymorpha HOM05D005267 ORTHO05D006303 5.4e-11 72.4 169 27.2
MCO14G360 Micromonas commoda HOM05D005267 ORTHO05D006303 7.0e-11 72.0 163 27.6
BolC9t56010H Brassica oleracea HOM05D008384 ORTHO05D042359 1.2e-10 71.2 38 81.6
Cre10.g418700 Chlamydomonas reinhardtii HOM05D005267 ORTHO05D006303 2.7e-10 70.1 173 28.9
Pp3c20_11400 Physcomitrium patens HOM05D005267 ORTHO05D006303 2.3e-09 67.0 170 24.7
AagrBONN_evm.TU.Sc2ySwM_362.204 Anthoceros agrestis HOM05D005267 ORTHO05D006303 1.5e-08 64.3 130 29.2
Pp3c8_10880 Physcomitrium patens HOM05D005267 ORTHO05D006303 9.5e-08 61.6 206 22.3
arahy.Tifrunner.gnm1.ann1.4NE9EM Arachis hypogaea HOM05D005267 ORTHO05D006303 3.6e-07 59.7 36 66.7
FvH4_6g21293 Fragaria vesca HOM05D005267 ORTHO05D006303 4.0e-06 56.2 35 65.7


User provided reference genes

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