Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 6.4e-26 119.8 53 100.0
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.4e-25 118.6 53 98.1
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 9.3e-25 115.9 53 96.2
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 9.3e-25 115.9 53 96.2
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 9.3e-25 115.9 53 96.2
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 6.0e-24 113.2 53 92.5
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 1.0e-23 112.5 53 90.6
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 1.0e-23 112.5 53 90.6
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 1.0e-23 112.5 53 90.6
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 1.3e-23 112.1 53 90.6
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 2.3e-23 111.3 52 92.3
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 2.3e-23 111.3 53 88.7
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 3.0e-23 110.9 53 88.7
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 8.7e-23 109.4 53 86.8
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 8.7e-23 109.4 53 86.8
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 1.1e-22 109.0 53 86.8
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 3.3e-22 107.5 53 86.8
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 3.3e-22 107.5 52 88.5
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 3.3e-22 107.5 52 88.5
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 4.3e-22 107.1 53 84.9
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 5.6e-22 106.7 52 88.5
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 7.3e-22 106.3 51 90.2
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 7.3e-22 106.3 53 84.9
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 7.3e-22 106.3 52 88.5
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 9.6e-22 105.9 53 84.9
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 9.6e-22 105.9 53 84.9
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 1.6e-21 105.1 53 84.9
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 2.1e-21 104.8 53 86.8
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 2.8e-21 104.4 53 83.0
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 2.8e-21 104.4 53 84.9
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 2.8e-21 104.4 53 84.9
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 2.8e-21 104.4 52 86.5
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 2.8e-21 104.4 53 83.0
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 3.6e-21 104.0 52 84.6
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 3.6e-21 104.0 52 84.6
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 3.6e-21 104.0 53 83.0
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 6.2e-21 103.2 53 79.2
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 6.2e-21 103.2 53 83.0
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 8.1e-21 102.8 53 81.1
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 1.1e-20 102.4 53 79.2
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 1.4e-20 102.1 53 79.2
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 1.4e-20 102.1 53 79.2
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.4e-20 102.1 53 79.2
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 1.4e-20 102.1 53 83.0
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 1.8e-20 101.7 52 78.8
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 1.8e-20 101.7 53 79.2
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 1.8e-20 101.7 53 79.2
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 1.8e-20 101.7 53 79.2
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 1.8e-20 101.7 53 79.2
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 1.8e-20 101.7 53 79.2
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 1.8e-20 101.7 52 82.7
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 2.4e-20 101.3 53 79.2
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 2.4e-20 101.3 53 79.2
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 3.1e-20 100.9 52 78.8
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 3.1e-20 100.9 52 78.8
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 3.1e-20 100.9 52 78.8
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 3.1e-20 100.9 52 78.8
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 3.1e-20 100.9 51 84.3
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 3.1e-20 100.9 52 82.7
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 3.1e-20 100.9 52 78.8
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 3.1e-20 100.9 51 84.3
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 3.1e-20 100.9 53 81.1
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 3.1e-20 100.9 53 81.1
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 3.1e-20 100.9 53 81.1
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 3.1e-20 100.9 53 81.1
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 3.1e-20 100.9 52 78.8
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 3.1e-20 100.9 53 77.4
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 4.0e-20 100.5 52 82.7
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 4.0e-20 100.5 51 84.3
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 4.0e-20 100.5 51 84.3
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 4.0e-20 100.5 51 84.3
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 4.0e-20 100.5 53 79.2
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 5.3e-20 100.1 52 78.8
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 6.9e-20 99.8 52 80.8
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 6.9e-20 99.8 53 77.4
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 9.0e-20 99.4 53 79.2
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 1.2e-19 99.0 53 75.5
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 1.2e-19 99.0 53 75.5
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 1.2e-19 99.0 52 76.9
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 1.2e-19 99.0 51 84.3
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.5e-19 98.6 53 75.5
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.5e-19 98.6 53 79.2
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 1.5e-19 98.6 53 81.1
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 2.0e-19 98.2 52 76.9
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 2.0e-19 98.2 52 76.9
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 2.0e-19 98.2 52 76.9
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 2.0e-19 98.2 52 76.9
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 2.0e-19 98.2 52 76.9
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 2.0e-19 98.2 52 76.9
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 2.0e-19 98.2 53 79.2
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 2.0e-19 98.2 53 79.2
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 3.4e-19 97.4 52 76.9
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 5.8e-19 96.7 52 78.8
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 7.6e-19 96.3 52 76.9
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 7.6e-19 96.3 51 80.4
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 7.6e-19 96.3 53 77.4
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 9.9e-19 95.9 52 78.8
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 9.9e-19 95.9 53 77.4
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 1.3e-18 95.5 52 75.0
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 1.3e-18 95.5 52 75.0
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 1.3e-18 95.5 53 79.2
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 1.3e-18 95.5 52 78.8
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 1.7e-18 95.1 52 76.9
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 2.2e-18 94.7 53 71.7
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 2.2e-18 94.7 52 78.8
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 2.2e-18 94.7 52 78.8
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 6.4e-18 93.2 52 76.9
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 8.4e-18 92.8 52 76.9
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 8.4e-18 92.8 52 76.9
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 1.1e-17 92.4 52 69.2
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 1.1e-17 92.4 52 69.2
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 1.1e-17 92.4 53 73.6
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 1.4e-17 92.0 51 76.5
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 7.1e-17 89.7 49 77.6
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 9.3e-17 89.4 51 72.5
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 4.6e-16 87.0 51 72.5
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 7.9e-16 86.3 51 70.6
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 1.3e-15 85.5 50 72.0
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 1.9e-14 81.6 38 92.1
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 2.5e-14 81.3 53 64.2
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 2.5e-14 81.3 53 64.2
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 3.7e-13 77.4 75 52.0
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 2.4e-12 74.7 53 58.5
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 6.9e-12 73.2 52 57.7
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 9.9e-11 69.3 39 74.4
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 1.1e-09 65.9 52 51.9
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 1.4e-09 65.5 33 78.8
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 2.4e-09 64.7 51 56.9
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 1.2e-08 62.4 33 78.8
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 3.5e-08 60.8 31 83.9
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 2.3e-07 58.2 52 53.8
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 5.1e-07 57.0 52 50.0
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 8.7e-07 56.2 48 52.1
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 7.4e-06 53.1 32 68.8


User provided reference genes

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