Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008578g0030 Nicotiana tabacum HOM05D003726 ORTHO05D003520 6.1e-214 747.3 397 100.0
Cc01_g14320 Coffea canephora HOM05D003726 ORTHO05D003520 1.9e-45 187.6 457 37.6
Dinv28651 Davidia involucrata HOM05D003726 ORTHO05D003520 3.7e-41 173.3 431 36.0
QL01p038574 Quercus lobata HOM05D003726 ORTHO05D003520 2.0e-39 167.5 440 35.7
Potri.009G046900 Populus trichocarpa HOM05D003726 ORTHO05D003520 2.2e-38 164.1 444 35.8
Sabra09G0034300 Salix brachista HOM05D003726 ORTHO05D003520 4.6e-36 156.4 446 36.1
CSS0031801 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.0e-35 155.2 422 33.2
Actinidia23884 Actinidia chinensis HOM05D003726 ORTHO05D003520 6.7e-35 152.5 425 35.5
Thecc.09G299900 Theobroma cacao HOM05D003726 ORTHO05D003520 4.3e-34 149.8 434 34.6
CiPaw.13G076400 Carya illinoinensis HOM05D003726 ORTHO05D003520 5.7e-34 149.4 441 35.4
Hma1.2p1_0962F.1_g241820 Hydrangea macrophylla HOM05D003726 ORTHO05D003520 2.2e-33 147.5 405 33.3
Gorai.009G091100 Gossypium raimondii HOM05D003726 ORTHO05D003520 4.8e-33 146.4 438 35.2
Cfa011708 Carpinus fangiana HOM05D003726 ORTHO05D003520 6.3e-33 146.0 411 32.1
Gohir.A05G087800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 6.3e-33 146.0 440 35.2
Gohir.D05G088900 Gossypium hirsutum HOM05D003726 ORTHO05D003520 6.3e-33 146.0 436 34.9
CSS0008670 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 3.1e-32 143.7 428 32.2
DCAR_005887 Daucus carota HOM05D003726 ORTHO05D003520 2.6e-31 140.6 412 32.3
CiPaw.14G058500 Carya illinoinensis HOM05D003726 ORTHO05D003520 5.9e-31 139.4 424 33.5
Cpa.g.sc112.4 Carica papaya HOM05D003726 ORTHO05D003520 2.9e-30 137.1 448 30.8
Haze_24339 Corylus avellana HOM05D003726 ORTHO05D003520 5.0e-30 136.3 437 33.6
COL.COLO4_19173 Corchorus olitorius HOM05D003726 ORTHO05D003520 6.5e-30 136.0 411 33.6
Duzib168G1865 Durio zibethinus HOM05D003726 ORTHO05D003520 1.9e-29 134.4 446 32.7
Actinidia34457 Actinidia chinensis HOM05D003726 ORTHO05D003520 4.2e-29 133.3 432 35.4
Manes.02G118700 Manihot esculenta HOM05D003726 ORTHO05D003520 3.0e-27 127.1 446 32.1
EL10Ac7g16184 Beta vulgaris HOM05D003726 ORTHO05D003520 1.1e-26 125.2 419 33.9
Aqoxy4G02538 Aquilegia oxysepala HOM05D003726 ORTHO05D003520 7.4e-26 122.5 418 31.1
Dinv03102 Davidia involucrata HOM05D003726 ORTHO05D003520 9.7e-26 122.1 319 35.1
CANSAT54G2733 Cannabis sativa HOM05D003726 ORTHO05D003520 1.1e-24 118.6 415 29.2
TWI31G1278 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 1.1e-24 118.6 419 32.2
Lalb_Chr18g0050991 Lupinus albus HOM05D003726 ORTHO05D003520 1.4e-24 118.2 441 29.5
Duzib170G0773 Durio zibethinus HOM05D003726 ORTHO05D003520 1.8e-24 117.9 390 35.6
Nn2g13146 Nelumbo nucifera HOM05D003726 ORTHO05D003520 1.8e-24 117.9 449 32.3
TAR623G0590 Trochodendron aralioides HOM05D003726 ORTHO05D003520 6.9e-24 115.9 411 30.7
Phvul.008G260800 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 1.2e-23 115.2 433 32.3
MSTRG.12680 Avicennia marina HOM05D003726 ORTHO05D003520 4.5e-23 113.2 407 32.7
Lalb_Chr04g0252221 Lupinus albus HOM05D003726 ORTHO05D003520 5.9e-23 112.8 433 31.6
Nn2g10861 Nelumbo nucifera HOM05D003726 ORTHO05D003520 5.9e-23 112.8 437 30.2
TAR369G0146 Trochodendron aralioides HOM05D003726 ORTHO05D003520 1.0e-22 112.1 428 29.2
Glyma.14G194200 Glycine max HOM05D003726 ORTHO05D003520 5.0e-22 109.8 446 29.8
TPR.G15189 Trifolium pratense HOM05D003726 ORTHO05D003520 5.0e-22 109.8 433 29.8
CsaV3_1G036240 Cucumis sativus L. HOM05D003726 ORTHO05D003520 2.5e-21 107.5 441 30.6
MELO3C020542.2 Cucumis melo HOM05D003726 ORTHO05D003520 5.5e-21 106.3 440 30.2
MD11G1072700 Malus domestica HOM05D003726 ORTHO05D003520 1.2e-20 105.1 401 31.4
Eucgr.B02248 Eucalyptus grandis HOM05D003726 ORTHO05D003520 1.6e-20 104.8 401 30.4
Rhsim01G0236900 Rhododendron simsii HOM05D003726 ORTHO05D003520 1.6e-20 104.8 421 31.1
Lj1P136T16 Lonicera japonica HOM05D003726 ORTHO05D003520 2.1e-20 104.4 321 34.3
AUR62020147 Chenopodium quinoa HOM05D003726 ORTHO05D003520 3.6e-20 103.6 390 30.5
Sed0010018 Sechium edule HOM05D003726 ORTHO05D003520 4.7e-20 103.2 206 39.8
ClCG03G000690 Citrullus lanatus HOM05D003726 ORTHO05D003520 6.1e-20 102.8 451 30.6
Ca_14944_v3 Cicer arietinum L. HOM05D003726 ORTHO05D003520 7.9e-20 102.4 385 29.4
Ah.08g221410 Amaranthus hybridus HOM05D003726 ORTHO05D003520 1.8e-19 101.3 389 29.3
Rhsim13G0068300 Rhododendron simsii HOM05D003726 ORTHO05D003520 1.8e-19 101.3 404 28.5
VMungo0647G1535 Vigna mungo HOM05D003726 ORTHO05D003520 3.0e-19 100.5 425 30.6
arahy.Tifrunner.gnm1.ann1.IE2B4C Arachis hypogaea HOM05D003726 ORTHO05D003520 5.1e-19 99.8 446 31.6
Sed0002259 Sechium edule HOM05D003726 ORTHO05D003520 6.7e-19 99.4 200 39.0
arahy.Tifrunner.gnm1.ann1.P4YYRQ Arachis hypogaea HOM05D003726 ORTHO05D003520 2.0e-18 97.8 432 30.8
Glyma.02G227100 Glycine max HOM05D003726 ORTHO05D003520 3.3e-18 97.1 423 29.3
THA.LOC104810708 Tarenaya hassleriana HOM05D003726 ORTHO05D003520 5.7e-18 96.3 245 37.1
Lsat_1_v5_gn_8_70880 Lactuca sativa HOM05D003726 ORTHO05D003520 9.7e-18 95.5 395 29.1
RcHm_v2.0_Chr5g0069911 Rosa chinensis HOM05D003726 ORTHO05D003520 9.7e-18 95.5 207 42.5
MD03G1068300 Malus domestica HOM05D003726 ORTHO05D003520 1.7e-17 94.7 415 28.4
LjContig00155g0026227 Lotus japonicus HOM05D003726 ORTHO05D003520 2.2e-17 94.4 436 31.4
Medtr3g464300 Medicago truncatula HOM05D003726 ORTHO05D003520 2.8e-17 94.0 419 27.7
Prupe.6G056200 Prunus persica HOM05D003726 ORTHO05D003520 3.7e-17 93.6 213 40.8
ClCG10G022200 Citrullus lanatus HOM05D003726 ORTHO05D003520 4.8e-17 93.2 334 29.9
GSVIVG01011170001 Vitis vinifera HOM05D003726 ORTHO05D003520 4.8e-17 93.2 280 35.4
SalBow2G1798 Salvia bowleyana HOM05D003726 ORTHO05D003520 1.8e-16 91.3 392 28.8
Cpa.g.sc11.124 Carica papaya HOM05D003726 ORTHO05D003520 7.0e-16 89.4 423 29.3
AL8G34900 Arabidopsis lyrata HOM05D011448 ORTHO05D003520 9.1e-16 89.0 406 29.8
FAN16G2238 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.2e-15 88.6 403 32.0
CSS0035019 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 2.0e-15 87.8 410 26.1
Lj6g0007419 Lotus japonicus HOM05D003726 ORTHO05D003520 4.5e-15 86.7 413 29.3
CARHR272490 Cardamine hirsuta HOM05D011448 ORTHO05D003520 5.9e-15 86.3 406 30.3
AUR62001632 Chenopodium quinoa HOM05D003726 ORTHO05D003520 5.9e-15 86.3 176 39.8
Actinidia05361 Actinidia chinensis HOM05D003726 ORTHO05D003520 7.7e-15 85.9 470 27.0
Oeu005176.1 Olea europaea HOM05D003726 ORTHO05D003520 1.3e-14 85.1 406 28.3
FAN25G1890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.2e-14 84.3 444 32.0
FvH4_3g38760 Fragaria vesca HOM05D003726 ORTHO05D003520 2.9e-14 84.0 158 43.7
MBI03_g31834_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 2.9e-14 84.0 448 27.2
Potri.016G117400 Populus trichocarpa HOM05D003726 ORTHO05D003520 2.9e-14 84.0 446 25.3
TWI74G0063 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 2.9e-14 84.0 271 30.3
CSS0024143 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 3.8e-14 83.6 141 41.8
PGR102G0699 Punica granatum HOM05D003726 ORTHO05D003520 3.8e-14 83.6 412 28.2
CsaV3_3G033690 Cucumis sativus L. HOM05D003726 ORTHO05D003520 5.0e-14 83.2 340 30.0
A10p15630 Brassica napus HOM05D011448 ORTHO05D003520 6.5e-14 82.8 399 29.6
BraA10t43670Z Brassica rapa HOM05D011448 ORTHO05D003520 6.5e-14 82.8 396 29.3
FAN21G3554 Fragaria x ananassa HOM05D003726 ORTHO05D003520 8.5e-14 82.4 444 30.6
Manes.09G107700 Manihot esculenta HOM05D003726 ORTHO05D003520 8.5e-14 82.4 425 28.7
BcaC04g19824 Brassica carinata HOM05D011448 ORTHO05D003520 1.1e-13 82.0 404 29.2
BolC9t57921H Brassica oleracea HOM05D011448 ORTHO05D003520 1.1e-13 82.0 404 29.2
FAN11G0812 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.5e-13 81.6 158 43.0
PSO339G6116 Papaver somniferum HOM05D003726 ORTHO05D003520 1.5e-13 81.6 393 26.0
Haze_21015 Corylus avellana HOM05D003726 ORTHO05D003520 1.9e-13 81.3 388 27.8
Thhalv10015324m.g Eutrema salsugineum HOM05D011448 ORTHO05D003520 1.9e-13 81.3 407 29.7
MBI03_g32367_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 1.9e-13 81.3 440 27.0
Hund20990 Selenicereus undatus HOM05D003726 ORTHO05D003520 4.2e-13 80.1 306 31.4
Dinv14505 Davidia involucrata HOM05D003726 ORTHO05D003520 1.6e-12 78.2 396 28.5
Atru.chr3.4198 Acer truncatum HOM05D003726 ORTHO05D003520 3.6e-12 77.0 138 40.6
Ciclev10011806m.g Citrus clementina HOM05D003726 ORTHO05D003520 3.6e-12 77.0 428 27.1
Psat5g158000 Pisum sativum HOM05D003726 ORTHO05D003520 3.6e-12 77.0 421 26.8
MELO3C009159.2 Cucumis melo HOM05D003726 ORTHO05D003520 4.7e-12 76.6 344 30.2
Thecc.05G014300 Theobroma cacao HOM05D003726 ORTHO05D003520 4.7e-12 76.6 406 26.4
QL07p035285 Quercus lobata HOM05D003726 ORTHO05D003520 6.1e-12 76.3 426 25.8
Duzib128G0808 Durio zibethinus HOM05D003726 ORTHO05D003520 8.0e-12 75.9 395 26.8
MD04G1154900 Malus domestica HOM05D003726 ORTHO05D003520 1.0e-11 75.5 423 26.5
Solyc09g005570.3 Solanum lycopersicum HOM05D003726 ORTHO05D003520 1.0e-11 75.5 176 35.2
Sopen09g001480 Solanum pennellii HOM05D003726 ORTHO05D003520 1.0e-11 75.5 176 35.2
Glyma.18G202500 Glycine max HOM05D003726 ORTHO05D003520 1.4e-11 75.1 411 27.7
MD12G1168500 Malus domestica HOM05D003726 ORTHO05D003520 1.8e-11 74.7 429 25.2
Cfa017195 Carpinus fangiana HOM05D003726 ORTHO05D003520 3.0e-11 73.9 388 26.8
AT5G58630 Arabidopsis thaliana HOM05D011448 ORTHO05D003520 4.0e-11 73.6 394 26.9
Glyma.11G174300 Glycine max HOM05D003726 ORTHO05D003520 4.0e-11 73.6 462 29.7
PGSC0003DMG400030244 Solanum tuberosum HOM05D003726 ORTHO05D003520 5.2e-11 73.2 181 32.6
Glyma.07G151200 Glycine max HOM05D003726 ORTHO05D003520 6.7e-11 72.8 412 27.2
C09p50710 Brassica napus HOM05D011448 ORTHO05D003520 8.8e-11 72.4 395 29.4
Glyma.18G062100 Glycine max HOM05D003726 ORTHO05D003520 2.0e-10 71.2 450 28.2
Oeu054393.1 Olea europaea HOM05D003726 ORTHO05D003520 2.6e-10 70.9 395 25.1
Duzib093G1061 Durio zibethinus HOM05D003726 ORTHO05D003520 4.4e-10 70.1 411 25.8
Phvul.010G076500 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 4.4e-10 70.1 204 35.3
Lalb_Chr07g0193641 Lupinus albus HOM05D003726 ORTHO05D003520 5.7e-10 69.7 398 28.9
VMungo0331G0804 Vigna mungo HOM05D003726 ORTHO05D003520 5.7e-10 69.7 177 36.2
Nitab4.5_0002020g0040 Nicotiana tabacum HOM05D003726 ORTHO05D003520 7.5e-10 69.3 406 25.1
DCAR_024016 Daucus carota HOM05D003726 ORTHO05D003520 9.7e-10 68.9 387 25.6
Peaxi162Scf00170g00213 Petunia axillaris HOM05D003726 ORTHO05D003520 1.3e-09 68.6 194 32.0
Sabra16G0113500 Salix brachista HOM05D003726 ORTHO05D003520 1.3e-09 68.6 435 26.0
SGA_v2.0_scaffold110G31210 Striga asiatica HOM05D003726 ORTHO05D003520 2.2e-09 67.8 393 26.7
COL.COLO4_14518 Corchorus olitorius HOM05D003726 ORTHO05D003520 2.8e-09 67.4 275 30.9
Nitab4.5_0000261g0020 Nicotiana tabacum HOM05D003726 ORTHO05D003520 2.8e-09 67.4 309 27.5
Migut.L02021 Erythranthe guttata HOM05D003726 ORTHO05D003520 3.7e-09 67.0 412 28.4
Prupe.6G278700 Prunus persica HOM05D003726 ORTHO05D003520 4.8e-09 66.6 436 25.7
Peaxi162Scf79720g00003 Petunia axillaris HOM05D003726 ORTHO05D003520 8.2e-09 65.9 193 31.1
TWI53G1918 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 8.2e-09 65.9 402 24.9
Atru.chr8.2256 Acer truncatum HOM05D003726 ORTHO05D003520 1.8e-08 64.7 395 26.1
FvH4_6g11320 Fragaria vesca HOM05D003726 ORTHO05D003520 1.8e-08 64.7 137 36.5
FAN14G4204 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.8e-08 64.7 137 36.5
SalBow4G2563 Salvia bowleyana HOM05D003726 ORTHO05D003520 1.8e-08 64.7 160 36.9
CiPaw.09G210300 Carya illinoinensis HOM05D003726 ORTHO05D003520 7.0e-08 62.8 407 24.8
FAN09G2526 Fragaria x ananassa HOM05D003726 ORTHO05D003520 7.0e-08 62.8 174 33.9
RcHm_v2.0_Chr3g0462881 Rosa chinensis HOM05D003726 ORTHO05D003520 7.0e-08 62.8 161 34.8
MSTRG.26816 Avicennia marina HOM05D003726 ORTHO05D003520 1.2e-07 62.0 184 31.5
FAN02G2870 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.2e-07 62.0 166 33.7
FAN14G0787 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.0e-07 61.2 166 33.7
PSO384G5133 Papaver somniferum HOM05D003726 ORTHO05D003520 2.0e-07 61.2 334 25.7
Medtr4g015650 Medicago truncatula HOM05D003726 ORTHO05D003520 4.5e-07 60.1 201 29.4
EL10Ac5g12551 Beta vulgaris HOM05D029928 ORTHO05D003520 5.9e-07 59.7 421 24.5
Glyma.03G056800 Glycine max HOM05D003726 ORTHO05D003520 5.9e-07 59.7 208 32.7
CDE08G1412 Ceratophyllum demersum HOM05D044379 ORTHO05D003520 2.2e-06 57.8 421 25.4
Eucgr.A00522 Eucalyptus grandis HOM05D003726 ORTHO05D003520 2.9e-06 57.4 154 36.4
TPR.G13333 Trifolium pratense HOM05D003726 ORTHO05D003520 2.9e-06 57.4 174 32.8
HPP92_013884 Vanilla planifolia HOM05D003726 ORTHO05D003520 2.9e-06 57.4 385 23.4
Gorai.006G183100 Gossypium raimondii HOM05D003726 ORTHO05D003520 5.0e-06 56.6 379 25.1
Sp6g20330 Schrenkiella parvula HOM05D011448 ORTHO05D003520 5.0e-06 56.6 395 26.6
TPR.G34575 Trifolium pratense HOM05D003726 ORTHO05D003520 5.0e-06 56.6 193 33.2


User provided reference genes

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