Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 8.4e-171 603.6 305 100.0
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.8e-160 569.3 305 95.1
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 9.1e-133 477.2 287 85.7
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 6.5e-131 471.1 314 80.6
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.0e-128 463.8 312 79.8
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 2.4e-125 452.6 301 79.7
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 3.0e-120 435.6 310 78.1
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 8.6e-107 391.0 299 68.9
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 4.3e-106 388.7 299 68.6
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 6.2e-105 384.8 299 67.9
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 3.7e-102 375.6 318 66.0
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 3.0e-99 365.9 220 79.5
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 3.0e-99 365.9 220 79.5
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 3.0e-99 365.9 252 73.4
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 2.5e-98 362.8 268 70.1
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 2.5e-98 362.8 248 73.4
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 1.2e-97 360.5 281 67.3
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 1.6e-97 360.1 292 64.7
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 2.1e-97 359.8 258 71.3
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 2.0e-95 353.2 269 68.8
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 2.6e-95 352.8 267 67.4
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 7.5e-95 351.3 230 76.5
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 1.9e-93 346.7 232 75.4
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 5.4e-93 345.1 288 64.2
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 9.2e-93 344.4 223 75.3
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 1.6e-92 343.6 261 69.7
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 3.0e-91 339.3 284 64.4
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 5.1e-91 338.6 252 68.3
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 5.1e-91 338.6 256 64.5
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 8.6e-91 337.8 269 67.3
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 1.1e-90 337.4 264 65.2
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 1.1e-90 337.4 213 75.6
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 4.3e-90 335.5 277 66.1
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 4.3e-90 335.5 274 65.0
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 5.6e-90 335.1 275 63.3
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 5.6e-90 335.1 258 68.2
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 7.3e-90 334.7 250 67.2
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 9.5e-90 334.3 277 64.3
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 9.5e-90 334.3 268 65.7
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 1.6e-89 333.6 238 68.5
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 1.6e-89 333.6 273 64.8
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 2.1e-89 333.2 243 68.7
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 2.8e-89 332.8 255 65.9
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 2.8e-89 332.8 254 68.1
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 3.6e-89 332.4 250 66.8
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 8.1e-89 331.3 283 64.0
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 8.1e-89 331.3 232 72.8
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 2.3e-88 329.7 272 65.8
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 3.1e-88 329.3 279 64.2
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 3.1e-88 329.3 260 65.8
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 6.8e-88 328.2 270 63.0
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 2.0e-87 326.6 241 68.9
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 3.4e-87 325.9 214 74.3
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 3.4e-87 325.9 286 61.5
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 5.8e-87 325.1 256 66.4
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 5.8e-87 325.1 234 71.4
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 5.8e-87 325.1 280 63.6
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 7.6e-87 324.7 259 66.4
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 9.9e-87 324.3 280 62.5
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 1.3e-86 323.9 271 63.5
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 1.7e-86 323.6 278 62.6
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 2.2e-86 323.2 271 63.1
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 2.2e-86 323.2 270 64.1
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 2.2e-86 323.2 234 70.9
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 2.2e-86 323.2 234 70.9
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 2.2e-86 323.2 228 68.4
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 2.2e-86 323.2 277 63.2
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 2.9e-86 322.8 258 65.1
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 3.8e-86 322.4 236 68.6
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 4.9e-86 322.0 268 63.8
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 8.4e-86 321.2 277 62.5
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 1.1e-85 320.9 216 72.2
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 2.4e-85 319.7 220 70.5
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 3.2e-85 319.3 235 69.8
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 4.1e-85 318.9 278 61.5
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 4.1e-85 318.9 265 64.5
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 5.4e-85 318.5 223 68.6
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 7.1e-85 318.2 261 64.0
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 9.2e-85 317.8 259 64.1
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 1.2e-84 317.4 215 73.5
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 3.5e-84 315.8 229 69.4
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 3.5e-84 315.8 218 72.9
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 6.0e-84 315.1 256 65.6
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 6.0e-84 315.1 256 65.6
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 6.0e-84 315.1 256 65.6
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 7.8e-84 314.7 259 63.7
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 7.8e-84 314.7 259 63.7
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 7.8e-84 314.7 273 59.7
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 1.0e-83 314.3 264 62.9
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 1.7e-83 313.5 258 65.5
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 1.7e-83 313.5 258 65.5
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 3.0e-83 312.8 272 61.0
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 3.9e-83 312.4 220 70.5
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 3.9e-83 312.4 259 63.3
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 6.6e-83 311.6 258 64.7
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 8.6e-83 311.2 260 63.1
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 1.1e-82 310.8 266 59.8
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 1.1e-82 310.8 236 67.4
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 1.5e-82 310.5 258 62.0
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 3.3e-82 309.3 270 60.7
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 9.6e-82 307.8 212 73.1
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 1.6e-81 307.0 271 60.9
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 2.1e-81 306.6 269 62.1
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 3.6e-81 305.8 268 62.3
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 3.6e-81 305.8 229 69.4
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 6.2e-81 305.1 214 72.0
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 6.2e-81 305.1 230 66.1
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 8.1e-81 304.7 269 61.7
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 1.4e-80 303.9 187 80.2
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 5.2e-80 302.0 271 60.1
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 1.5e-79 300.4 262 60.7
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 2.0e-79 300.1 228 64.9
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 2.6e-79 299.7 269 59.5
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 1.9e-77 293.5 271 55.4
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 3.2e-77 292.7 267 57.7
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 3.2e-77 292.7 266 58.3
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 5.4e-77 292.0 246 62.6
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 1.6e-76 290.4 246 62.2
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 1.6e-76 290.4 246 62.2
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 6.0e-76 288.5 246 61.8
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 6.0e-76 288.5 207 69.1
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 2.3e-75 286.6 277 58.8
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 5.1e-75 285.4 253 61.3
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 1.1e-74 284.3 246 61.4
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 1.1e-74 284.3 246 61.4
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.1e-74 284.3 260 58.5
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 2.5e-74 283.1 260 58.5
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 3.3e-74 282.7 259 59.1
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 7.3e-74 281.6 278 57.6
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 2.1e-73 280.0 205 70.2
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 6.2e-73 278.5 222 60.8
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 6.2e-73 278.5 178 76.4
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 1.4e-72 277.3 257 58.4
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 5.8e-71 271.9 184 73.9
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 9.9e-71 271.2 222 59.9
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 9.9e-71 271.2 222 59.9
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 1.3e-70 270.8 217 60.4
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 2.2e-70 270.0 222 59.5
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 2.2e-70 270.0 222 59.5
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 2.2e-70 270.0 222 59.5
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 2.9e-70 269.6 219 60.3
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 1.1e-66 257.7 243 59.7
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 1.9e-66 256.9 308 49.7
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 1.6e-65 253.8 203 63.1
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 1.1e-58 231.1 257 52.1
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 9.0e-56 221.5 298 46.6
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 1.3e-54 217.6 276 49.3
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 1.7e-54 217.2 197 55.3
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 6.5e-54 215.3 144 75.0
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 1.9e-53 213.8 238 50.4
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 1.9e-53 213.8 144 74.3
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 2.1e-52 210.3 133 75.9
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 2.0e-47 193.7 226 46.5
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 3.8e-46 189.5 283 40.3
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 4.6e-44 182.6 183 55.7
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 8.2e-41 171.8 202 53.0
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 1.4e-35 154.5 160 43.1
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 3.0e-35 153.3 112 72.3
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.0e-27 128.3 79 78.5
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 7.5e-18 95.5 108 48.1
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 8.2e-17 92.0 73 64.4
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 4.1e-16 89.7 65 64.6
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 2.2e-14 84.0 89 47.2
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 3.0e-11 73.6 71 49.3
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 2.7e-07 60.5 76 48.7
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 5.9e-07 59.3 34 76.5
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 8.6e-06 55.5 44 61.4


User provided reference genes

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